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Predicting liver regeneration following major resection.
Published in:
Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-16968-9
By:
- Dehlke, Karolin;
- Krause, Linda;
- Tyufekchieva, Silvana;
- Murtha-Lemekhova, Anastasia;
- Mayer, Philipp;
- Vlasov, Artyom;
- Klingmüller, Ursula;
- Mueller, Nikola S.;
- Hoffmann, Katrin
Publication type:
Article
MicroRNA-Target Network Inference and Local Network Enrichment Analysis Identify Two microRNA Clusters with Distinct Functions in Head and Neck Squamous Cell Carcinoma.
Published in:
International Journal of Molecular Sciences, 2015, v. 16, n. 12, p. 30204, doi. 10.3390/ijms161226230
By:
- Sass, Steffen;
- Pitea, Adriana;
- Unger, Kristian;
- Hess, Julia;
- Mueller, Nikola S.;
- Theis, Fabian J.
Publication type:
Article
Interrogation of MS/MS search data with an pI Filter algorithm to increase protein identification success.
Published in:
Electrophoresis, 2007, v. 28, n. 12, p. 1867, doi. 10.1002/elps.200700022
By:
- Uwaje, Nkemdilim C.;
- Mueller, Nikola S.;
- Maccarrone, Giuseppina;
- Turck, Christoph W.
Publication type:
Article
A computational map of the human-SARS-CoV-2 protein–RNA interactome predicted at single-nucleotide resolution.
Published in:
NAR Genomics & Bioinformatics, 2023, v. 5, n. 1, p. 1, doi. 10.1093/nargab/lqad010
By:
- Horlacher, Marc;
- Oleshko, Svitlana;
- Hu, Yue;
- Ghanbari, Mahsa;
- Cantini, Giulia;
- Schinke, Patrick;
- Vergara, Ernesto Elorduy;
- Bittner, Florian;
- Mueller, Nikola S;
- Ohler, Uwe;
- Moyon, Lambert;
- Marsico, Annalisa
Publication type:
Article
A modular framework for gene set analysis integrating multilevel omics data.
Published in:
Nucleic Acids Research, 2013, v. 41, n. 21, p. 9622, doi. 10.1093/nar/gkt752
By:
- Sass, Steffen;
- Buettner, Florian;
- Mueller, Nikola S.;
- Theis, Fabian J.
Publication type:
Article
A novel molecular disease classifier for psoriasis and eczema.
Published in:
Experimental Dermatology, 2016, v. 25, n. 10, p. 767, doi. 10.1111/exd.13077
By:
- Garzorz‐Stark, Natalie;
- Krause, Linda;
- Lauffer, Felix;
- Atenhan, Anne;
- Thomas, Jenny;
- Stark, Sebastian P.;
- Franz, Regina;
- Weidinger, Stephan;
- Balato, Anna;
- Mueller, Nikola S.;
- Theis, Fabian J.;
- Ring, Johannes;
- Schmidt‐Weber, Carsten B.;
- Biedermann, Tilo;
- Eyerich, Stefanie;
- Eyerich, Kilian
Publication type:
Article
Integrative Analysis of MicroRNA and mRNA Data Reveals an Orchestrated Function of MicroRNAs in Skeletal Myocyte Differentiation in Response to TNF-α or IGF1.
Published in:
PLoS ONE, 2015, v. 10, n. 8, p. 1, doi. 10.1371/journal.pone.0135284
By:
- Meyer, Swanhild U.;
- Sass, Steffen;
- Mueller, Nikola S.;
- Krebs, Stefan;
- Bauersachs, Stefan;
- Kaiser, Sebastian;
- Blum, Helmut;
- Thirion, Christian;
- Krause, Sabine;
- Theis, Fabian J.;
- Pfaffl, Michael W.
Publication type:
Article
Single-cell RNA-seq denoising using a deep count autoencoder.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-018-07931-2
By:
- Eraslan, Gökcen;
- Simon, Lukas M.;
- Mircea, Maria;
- Mueller, Nikola S.;
- Theis, Fabian J.
Publication type:
Article
Patchwork organization of the yeast plasma membrane into numerous coexisting domains.
Published in:
Nature Cell Biology, 2012, v. 14, n. 8, p. 890, doi. 10.1038/ncb2552
By:
- Spira, Felix;
- Mueller, Nikola S.;
- Beck, Gisela;
- von Olshausen, Philipp;
- Beig, Joachim;
- Wedlich-Söldner, Roland
Publication type:
Article
Patchwork organization of the yeast plasma membrane into numerous coexisting domains.
Published in:
Nature Cell Biology, 2012, v. 14, n. 6, p. 640, doi. 10.1038/ncb2487
By:
- Spira, Felix;
- Mueller, Nikola S.;
- Beck, Gisela;
- von Olshausen, Philipp;
- Beig, Joachim;
- Wedlich-Söldner, Roland
Publication type:
Article
Copy number aberrations from Affymetrix SNP 6.0 genotyping data—how accurate are commonly used prediction approaches?
Published in:
Briefings in Bioinformatics, 2020, v. 21, n. 1, p. 272, doi. 10.1093/bib/bby096
By:
- Pitea, Adriana;
- Kondofersky, Ivan;
- Sass, Steffen;
- Theis, Fabian J;
- Mueller, Nikola S;
- Unger, Kristian
Publication type:
Article
Exome sequencing of osteosarcoma reveals mutation signatures reminiscent of BRCA deficiency.
Published in:
Nature Communications, 2015, v. 6, n. 12, p. 8940, doi. 10.1038/ncomms9940
By:
- Kovac, Michal;
- Blattmann, Claudia;
- Ribi, Sebastian;
- Smida, Jan;
- Mueller, Nikola S.;
- Engert, Florian;
- Castro-Giner, Francesc;
- Weischenfeldt, Joachim;
- Kovacova, Monika;
- Krieg, Andreas;
- Andreou, Dimosthenis;
- Tunn, Per-Ulf;
- Dürr, Hans Roland;
- Rechl, Hans;
- Schaser, Klaus-Dieter;
- Melcher, Ingo;
- Burdach, Stefan;
- Kulozik, Andreas;
- Specht, Katja;
- Heinimann, Karl
Publication type:
Article
AURKA, DLGAP5, TPX2, KIF11 and CKAP5: Five specific mitosis-associated genes correlate with poor prognosis for non-small cell lung cancer patients.
Published in:
International Journal of Oncology, 2017, v. 50, n. 2, p. 365, doi. 10.3892/ijo.2017.3834
By:
- SCHNEIDER, MARC A.;
- CHRISTOPOULOS, PETROS;
- MULEY, THOMAS;
- WARTH, ARNE;
- KLINGMUELLER, URSULA;
- THOMAS, MICHAEL;
- HERTH, FELIX J. F.;
- DIENEMANN, HENDRIK;
- MUELLER, NIKOLA S.;
- THEIS, FABIAN;
- MEISTER, MICHAEL
Publication type:
Article
miTALOS v2: Analyzing Tissue Specific microRNA Function.
Published in:
PLoS ONE, 2016, v. 11, n. 3, p. 1, doi. 10.1371/journal.pone.0151771
By:
- Preusse, Martin;
- Theis, Fabian J.;
- Mueller, Nikola S.
Publication type:
Article
Network Embedding Across Multiple Tissues and Data Modalities Elucidates the Context of Host Factors Important for COVID-19 Infection.
Published in:
Frontiers in Genetics, 2022, v. 13, p. 1, doi. 10.3389/fgene.2022.909714
By:
- Yue Hu;
- Rehawi, Ghalia;
- Moyon, Lambert;
- Gerstner, Nathalie;
- Ogris, Christoph;
- Knauer-Arloth, Janine;
- Bittner, Florian;
- Marsico, Annalisa;
- Mueller, Nikola S.
Publication type:
Article
Network Embedding Across Multiple Tissues and Data Modalities Elucidates the Context of Host Factors Important for COVID-19 Infection.
Published in:
Frontiers in Genetics, 2022, v. 13, p. 1, doi. 10.3389/fgene.2022.909714
By:
- Yue Hu;
- Rehawi, Ghalia;
- Moyon, Lambert;
- Gerstner, Nathalie;
- Ogris, Christoph;
- Knauer-Arloth, Janine;
- Bittner, Florian;
- Marsico, Annalisa;
- Mueller, Nikola S.
Publication type:
Article
Predicting gene expression in massively parallel reporter assays: A comparative study.
Published in:
Human Mutation, 2017, v. 38, n. 9, p. 1240, doi. 10.1002/humu.23197
By:
- Kreimer, Anat;
- Zeng, Haoyang;
- Edwards, Matthew D.;
- Guo, Yuchun;
- Tian, Kevin;
- Shin, Sunyoung;
- Welch, Rene;
- Wainberg, Michael;
- Mohan, Rahul;
- Sinnott‐Armstrong, Nicholas A.;
- Li, Yue;
- Eraslan, Gökcen;
- AMIN, Talal Bin;
- Tewhey, Ryan;
- Sabeti, Pardis C.;
- Goke, Jonathan;
- Mueller, Nikola S.;
- Kellis, Manolis;
- Kundaje, Anshul;
- Beer, Michael A
Publication type:
Article
BART-Seq: cost-effective massively parallelized targeted sequencing for genomics, transcriptomics, and single-cell analysis.
Published in:
Genome Biology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13059-019-1748-6
By:
- Uzbas, Fatma;
- Opperer, Florian;
- Sönmezer, Can;
- Shaposhnikov, Dmitry;
- Sass, Steffen;
- Krendl, Christian;
- Angerer, Philipp;
- Theis, Fabian J.;
- Mueller, Nikola S.;
- Drukker, Micha
Publication type:
Article
netReg: network-regularized linear models for biological association studies.
Published in:
Bioinformatics, 2018, v. 34, n. 5, p. 896, doi. 10.1093/bioinformatics/btx677
By:
- Dirmeier, Simon;
- Fuchs, Christiane;
- Mueller, Nikola S;
- Theis, Fabian J
Publication type:
Article
RAMONA: a Web application for gene set analysis on multilevel omics data.
Published in:
Bioinformatics, 2015, v. 31, n. 1, p. 128, doi. 10.1093/bioinformatics/btu610
By:
- Sass, Steffen;
- Buettner, Florian;
- Mueller, Nikola S.;
- Theis, Fabian J.
Publication type:
Article
Model Based Targeting of IL-6-Induced Inflammatory Responses in Cultured Primary Hepatocytes to Improve Application of the JAK Inhibitor Ruxolitinib.
Published in:
Frontiers in Physiology, 2017, p. 1, doi. 10.3389/fphys.2017.00775
By:
- Sobotta, Svantje;
- Raue, Andreas;
- Xiaoyun Huang;
- Vanlier, Joep;
- Jünger, Anja;
- Bohl, Sebastian;
- Albrecht, Ute;
- Hahnel, Maximilian J.;
- Wolf, Stephanie;
- Mueller, Nikola S.;
- D'alessandro, Lorenza A.;
- Mueller-Bohl, Stephanie;
- Boehm, Martin E.;
- Lucarelli, Philippe;
- Bonefas, Sandra;
- Damm, Georg;
- Seehofer, Daniel;
- Lehmann, Wolf D.;
- Rose-John, Stefan;
- Van Der Hoeven, Frank
Publication type:
Article

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