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Querying and computing with BioCyc databases.
- Published in:
- Bioinformatics, 2005, v. 21, n. 16, p. 3454, doi. 10.1093/bioinformatics/bti546
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- Article
Deciphering the complex leaf transcriptome of the allotetraploid species Nicotiana tabacum: a phylogenomic perspective.
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- BMC Genomics, 2012, v. 13, n. 1, p. 1, doi. 10.1186/1471-2164-13-406
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- Article
The 'PUCE CAFE' Project: the First 15K Coffee Microarray, a New Tool for Discovering Candidate Genes correlated to Agronomic and Quality Traits.
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- BMC Genomics, 2011, v. 12, n. 1, p. 1, doi. 10.1186/1471-2164-12-5
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- Article
High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening.
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- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-017-02782-9
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- Article
Genome sequence for the blue‐flowered Andean shrub Iochroma cyaneum reveals extensive discordance across the berry clade of Solanaceae.
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- Plant Genome, 2022, v. 15, n. 3, p. 1, doi. 10.1002/tpg2.20223
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- Article
The 'Tommy Atkins' mango genome reveals candidate genes for fruit quality.
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- BMC Plant Biology, 2021, v. 21, n. 1, p. 1, doi. 10.1186/s12870-021-02858-1
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- Article
TobEA: an atlas of tobacco gene expression fromseed to senescence.
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- BMC Genomics, 2010, v. 11, p. 142, doi. 10.1186/1471-2164-11-142
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- Article
solGS: a web-based tool for genomic selection.
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- BMC Bioinformatics, 2014, v. 15, n. 1, p. 407, doi. 10.1186/s12859-014-0398-7
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- Article
solQTL: a tool for QTL analysis, visualization and linking to genomes at SGN database.
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- BMC Bioinformatics, 2010, v. 11, p. 525, doi. 10.1186/1471-2105-11-525
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- Publication type:
- Article
Spatio-temporal modeling of high-throughput multispectral aerial images improves agronomic trait genomic prediction in hybrid maize.
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- Genetics, 2024, v. 227, n. 1, p. 1, doi. 10.1093/genetics/iyae037
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- Article
Large‐scale genome‐wide association study, using historical data, identifies conserved genetic architecture of cyanogenic glucoside content in cassava (Manihot esculenta Crantz) root.
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- Plant Journal, 2021, v. 105, n. 3, p. 754, doi. 10.1111/tpj.15071
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- Article
Metabolic profiles of six African cultivars of cassava (Manihot esculenta Crantz) highlight bottlenecks of root yield.
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- Plant Journal, 2020, v. 102, n. 6, p. 1202, doi. 10.1111/tpj.14693
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- Article
PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens.
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- Plant Journal, 2020, v. 102, n. 1, p. 165, doi. 10.1111/tpj.14607
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- Publication type:
- Article
De Novo Genome Sequence Assembly of Dwarf Coconut (Cocos nucifera L. 'Catigan Green Dwarf') Provides Insights into Genomic Variation Between Coconut Types and Related Palm Species.
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- G3: Genes | Genomes | Genetics, 2019, v. 9, n. 8, p. 2377, doi. 10.1534/g3.119.400215
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- Article
SolCyc: a database hub at the Sol Genomics Network (SGN) for the manual curation of metabolic networks in Solanum and Nicotiana specific databases.
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- Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay035
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- Article
From manual curation to visualization of gene families and networks across Solanaceae plant species.
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- Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat028
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- Publication type:
- Article
The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data.
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- Database: The Journal of Biological Databases & Curation, 2011, v. 2011, p. N.PAG, doi. 10.1093/database/bar051
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- Publication type:
- Article
Genetic structure of the four wild tomato species in the Solanum peruvianum s.l. species complex.
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- Genome, 2014, v. 57, n. 3, p. 169, doi. 10.1139/gen-2014-0003
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- Article
Correction to: Current status and impending progress for cassava structural genomics.
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- 2022
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- Correction Notice
Current status and impending progress for cassava structural genomics.
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- Plant Molecular Biology, 2022, v. 109, n. 3, p. 177, doi. 10.1007/s11103-020-01104-w
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- Article
Comprehensive repeatome annotation reveals strong potential impact of repetitive elements on tomato ripening.
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- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2980-z
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- Publication type:
- Article
Association analysis for disease resistance to Fusarium oxysporum in cape gooseberry (Physalis peruviana L).
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- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2568-7
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- Publication type:
- Article
Differential regulation of caffeine metabolism in Coffea arabica (Arabica) and Coffea canephora (Robusta).
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- Planta: An International Journal of Plant Biology, 2015, v. 241, n. 1, p. 179, doi. 10.1007/s00425-014-2170-7
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- Article
Metabolic networks of the Nicotiana genus in the spotlight: content, progress and outlook.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa136
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- Article
Molecular insight into cotton leaf curl geminivirus disease resistance in cultivated cotton (Gossypium hirsutum).
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- Plant Biotechnology Journal, 2020, v. 18, n. 3, p. 691, doi. 10.1111/pbi.13236
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- Article
Structure and Distribution of Centromeric Retrotransposons at Diploid and Allotetraploid Coffea Centromeric and Pericentromeric Regions.
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- Frontiers in Plant Science, 2018, p. 1, doi. 10.3389/fpls.2018.00175
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- Publication type:
- Article
Dissecting Tissue-Specific Transcriptomic Responses from Leaf and Roots under Salt Stress in Petunia hybrida Mitchell.
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- Genes, 2017, v. 8, n. 8, p. 195, doi. 10.3390/genes8080195
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- Article
An integrated mass spectrometric and computational framework for the analysis of protein interaction networks.
- Published in:
- Nature Biotechnology, 2007, v. 25, n. 3, p. 345, doi. 10.1038/nbt1289
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- Article
Analysis of a marine phototrophic biofilm by confocal laser scanning microscopy using the new image quantification software PHLIP.
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- BMC Ecology, 2006, v. 6, p. 1, doi. 10.1186/1472-6785-6-1
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- Publication type:
- Article
MangoBase: A Genomics Portal and Gene Expression Atlas for Mangifera indica.
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- Plants (2223-7747), 2023, v. 12, n. 6, p. 1273, doi. 10.3390/plants12061273
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- Publication type:
- Article
Capsidiol-related genes are highly expressed in response to Colletotrichum scovillei during Capsicum annuum fruit development stages.
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- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-68949-5
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- Article
Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding.
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- Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-19682-0
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- Article
Analysis of Ultra Low Genome Conservation in Clostridium difficile.
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- PLoS ONE, 2010, v. 5, n. 12, p. 1, doi. 10.1371/journal.pone.0015147
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- Article
Enabling proteomic studies with RNA-Seq: The proteome of tomato pollen as a test case.
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- Proteomics, 2012, v. 12, n. 6, p. 761, doi. 10.1002/pmic.201100164
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- Article
SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling.
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- Proteomics, 2007, v. 7, n. 19, p. 3470, doi. 10.1002/pmic.200700057
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- Article
Proteome Analysis of Legionella Vacuoles Purified by Magnetic Immunoseparation Reveals Secretory and Endosomal GTPases.
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- Traffic, 2009, v. 10, n. 1, p. 76, doi. 10.1111/j.1600-0854.2008.00851.x
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- Article
The oncological results of laparoscopic nephroureterectomy for upper urinary tract transitional cell cancer are equal to those of open nephroureterectomy.
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- BJU International, 2009, v. 103, n. 1, p. 66, doi. 10.1111/j.1464-410X.2008.07950.x
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- Publication type:
- Article
Can Cross-Country Genomic Predictions Be a Reasonable Strategy to Support Germplasm Exchange? – A Case Study With Hydrogen Cyanide in Cassava.
- Published in:
- Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.742638
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- Article
Chromosome length genome assembly of the redbanded stink bug, Piezodorus guildinii (Westwood).
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- BMC Research Notes, 2022, v. 15, n. 1, p. 1, doi. 10.1186/s13104-022-05924-5
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- Article
High density genotype storage for plant breeding in the Chado schema of Breedbase.
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- PLoS ONE, 2020, v. 15, n. 11, p. 1, doi. 10.1371/journal.pone.0240059
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- Publication type:
- Article
Development on Citrus medica infected with 'Candidatus Liberibacter asiaticus' has sex-specific and -nonspecific impacts on adult Diaphorina citri and its endosymbionts.
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- PLoS ONE, 2020, v. 15, n. 10, p. 1, doi. 10.1371/journal.pone.0239771
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- Article
Natural variation in stress response gene activity in the allopolyploid Arabidopsis suecica.
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- BMC Genomics, 2017, v. 18, n. 1, p. 1, doi. 10.1186/s12864-017-4067-x
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- Publication type:
- Article
The absence of the caffeine synthase gene is involved in the naturally decaffeinated status of Coffea humblotiana, a wild species from Comoro archipelago.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-87419-0
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- Publication type:
- Article
Lessons learned about the biology and genomics of Diaphorina citri infection with "Candidatus Liberibacter asiaticus" by integrating new and archived organ-specific transcriptome data.
- Published in:
- GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac035
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- Article
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. 1, p. D471, doi. 10.1093/nar/gkv1164
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- Article
The Sol Genomics Network (SGN)—from genotype to phenotype to breeding.
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- Nucleic Acids Research, 2015, v. 43, n. D1, p. D1036, doi. 10.1093/nar/gku1195
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- Publication type:
- Article
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. D1, p. D459, doi. 10.1093/nar/gkt1103
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- Publication type:
- Article
The Genome Database for Rosaceae (GDR): year 10 update.
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- Nucleic Acids Research, 2014, v. 42, n. D1, p. D1237, doi. 10.1093/nar/gkt1012
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- Publication type:
- Article
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.
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- Nucleic Acids Research, 2012, p. D742, doi. 10.1093/nar/gkr1014
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- Publication type:
- Article
The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D1149, doi. 10.1093/nar/gkq866
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- Publication type:
- Article