Works by Muddiman, David

Results: 140

Analytical strategies for the global quantification of intact proteins.

Published in:

Amino Acids, 2012, v. 43, n. 3, p. 1109, doi. 10.1007/s00726-012-1285-z

By:

Collier, Timothy;
Muddiman, David

Publication type:

Article

Phosphorylation-dependent proteome of Marcks in ependyma during aging and behavioral homeostasis in the mouse forebrain.

Published in:

GeroScience, 2022, v. 44, n. 4, p. 2077, doi. 10.1007/s11357-022-00517-3

By:

Muthusamy, Nagendran;
Williams, Taufika I.;
O'Toole, Ryan;
Brudvig, Jon J.;
Adler, Kenneth B.;
Weimer, Jill M.;
Muddiman, David C.;
Ghashghaei, H. Troy

Publication type:

Article

Topographic imaging with automatic z-axis correction of Brassica oleracea var. viridis leaves by IR-MALDESI mass spectrometry imaging.

Published in:

Analytical & Bioanalytical Chemistry, 2025, v. 417, n. 11, p. 2321, doi. 10.1007/s00216-025-05820-4

By:

Mills, Quinn;
Ashbacher, Sarah M.;
Sohn, Alexandria L.;
Muddiman, David C.

Publication type:

Article

Three-dimensional mass spectrometry imaging (3D MSI): incorporating top-hat IR-MALDESI and automatic z-axis correction: Three-dimensional mass spectrometry imaging (3D MSI): incorporating top-hat IR-MALDESI and automatic z-axis correction: A. L. Sohn et al

Published in:

Analytical & Bioanalytical Chemistry, 2025, v. 417, n. 8, p. 1649, doi. 10.1007/s00216-025-05755-w

By:

Sohn, Alexandria L.;
Witherspoon, John G.;
Smart, Robert C.;
Muddiman, David C.

Publication type:

Article

Quantitative sampling by IR-MALDESI is not susceptible to tissue heterogeneity in a multi-organ model: Quantitative sampling by IR-MALDESI is not susceptible to tissue heterogeneity in a multi-organ model: Joignant et al.

Published in:

Analytical & Bioanalytical Chemistry, 2025, v. 417, n. 1, p. 83, doi. 10.1007/s00216-024-05653-7

By:

Joignant, Alena N.;
Hector, Emily C.;
Barnes, Morgan M.;
Kullman, Seth W.;
Muddiman, David C.

Publication type:

Article

Rigorous scientific inquiry guided by creativity, curiosity and support: One of the last Renaissance scientists of our time.

Published in:

Analytical & Bioanalytical Chemistry, 2024, v. 416, n. 22, p. 4819, doi. 10.1007/s00216-024-05417-3

By:

Muddiman, David C.;
Hittle, Lucinda R.

Publication type:

Article

Optimizing neurotransmitter pathway detection by IR-MALDESI-MSI in mouse brain.

Published in:

Analytical & Bioanalytical Chemistry, 2024, v. 416, n. 18, p. 4207, doi. 10.1007/s00216-024-05354-1

By:

Wang, Mary F.;
Ouyang, Yunxin;
Segura, Tatiana;
Muddiman, David C.

Publication type:

Article

Comparative analysis of sucrose-embedding for whole-body zebrafish MSI by IR-MALDESI.

Published in:

Analytical & Bioanalytical Chemistry, 2023, v. 415, n. 26, p. 6389, doi. 10.1007/s00216-023-04914-1

By:

Wang, Mary F.;
Ritter, Morgan M.;
Kullman, Seth W.;
Muddiman, David C.

Publication type:

Article

Development of an object-based image analysis tool for mass spectrometry imaging ion classification.

Published in:

Analytical & Bioanalytical Chemistry, 2023, v. 415, n. 19, p. 4725, doi. 10.1007/s00216-023-04764-x

By:

Eisenberg, Seth M.;
Knizner, Kevan T.;
Muddiman, David C.

Publication type:

Article

Understanding the electrospray ionization response factors of per- and poly-fluoroalkyl substances (PFAS).

Published in:

Analytical & Bioanalytical Chemistry, 2022, v. 414, n. 3, p. 1227, doi. 10.1007/s00216-021-03545-8

By:

Enders, Jeffrey R.;
O'Neill, Grace M.;
Whitten, Jerry L.;
Muddiman, David C.

Publication type:

Article

Utilizing liquid chromatography, ion mobility spectrometry, and mass spectrometry to assess INLIGHT™ derivatized N-linked glycans in biological samples.

Published in:

Analytical & Bioanalytical Chemistry, 2022, v. 414, n. 1, p. 623, doi. 10.1007/s00216-021-03570-7

By:

Butler, Karen E.;
Kalmar, Jaclyn Gowen;
Muddiman, David C.;
Baker, Erin S.

Publication type:

Article

Three-dimensional (3D) imaging of lipids in skin tissues with infrared matrix-assisted laser desorption electrospray ionization (MALDESI) mass spectrometry.

Published in:

Analytical & Bioanalytical Chemistry, 2021, v. 413, n. 10, p. 2793, doi. 10.1007/s00216-020-03105-6

By:

Bai, Hongxia;
Linder, Keith E.;
Muddiman, David C.

Publication type:

Article

Enzyme Complexes of Ptr4CL and PtrHCT Modulate Co-enzyme A Ligation of Hydroxycinnamic Acids for Monolignol Biosynthesis in Populus trichocarpa.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.727932

By:

Lin, Chien-Yuan;
Sun, Yi;
Song, Jina;
Chen, Hsi-Chuan;
Shi, Rui;
Yang, Chenmin;
Liu, Jie;
Tunlaya-Anukit, Sermsawat;
Liu, Baoguang;
Loziuk, Philip L.;
Williams, Cranos M.;
Muddiman, David C.;
Lin, Ying-Chung Jimmy;
Sederoff, Ronald R.;
Wang, Jack P.;
Chiang, Vincent L.

Publication type:

Article

Capitalizing on the hydrophobic bias of electrospray ionization through chemical modification in mass spectrometry-based prote.

Published in:

Expert Review of Proteomics, 2011, v. 8, n. 3, p. 317, doi. 10.1586/EPR.11.24

By:

Shuford, Christopher M.;
Muddiman, David C.

Publication type:

Article

Label‐Free Quantitative Proteomics of Enriched Nuclei from Sugarcane (Saccharum ssp) Stems in Response to Drought Stress.

Published in:

Proteomics, 2019, v. 19, n. 14, p. N.PAG, doi. 10.1002/pmic.201900004

By:

Salvato, Fernanda;
Loziuk, Philip;
Kiyota, Eduardo;
Daneluzzi, Gabriel Silva;
Araújo, Pedro;
Muddiman, David C.;
Mazzafera, Paulo

Publication type:

Article

Regulation of phenylalanine ammonia-lyase (PAL) gene family in wood forming tissue of Populus trichocarpa.

Published in:

Planta: An International Journal of Plant Biology, 2013, v. 238, n. 3, p. 487, doi. 10.1007/s00425-013-1905-1

By:

Shi, Rui;
Shuford, Christopher;
Wang, Jack;
Sun, Ying-Hsuan;
Yang, Zhichang;
Chen, Hsi-Chuan;
Tunlaya-Anukit, Sermsawat;
Li, Quanzi;
Liu, Jie;
Muddiman, David;
Sederoff, Ronald;
Chiang, Vincent

Publication type:

Article

Functional redundancy of the two 5-hydroxylases in monolignol biosynthesis of Populus trichocarpa: LC-MS/MS based protein quantification and metabolic flux analysis.

Published in:

Planta: An International Journal of Plant Biology, 2012, v. 236, n. 3, p. 795, doi. 10.1007/s00425-012-1663-5

By:

Wang, Jack;
Shuford, Christopher;
Li, Quanzi;
Song, Jina;
Lin, Ying-Chung;
Sun, Ying-Hsuan;
Chen, Hsi-Chuan;
Williams, Cranos;
Muddiman, David;
Sederoff, Ronald;
Chiang, Vincent

Publication type:

Article

Turning the Tide Toward Equity: Gender Disparities in Scientific Publishing in Biomedical Mass Spectrometry.

Published in:

GEN Biotechnology, 2024, v. 3, n. 5, p. 299, doi. 10.1089/genbio.2024.0024

By:

Sahoo, Amitesh;
Chie, Chiara;
Muddiman, David C.;
Samal, Juhi

Publication type:

Article

Complete Proteomic-Based Enzyme Reaction and Inhibition Kinetics Reveal How Monolignol Biosynthetic Enzyme Families Affect Metabolic Flux and Lignin in Populus trichocarpa.

Published in:

Plant Cell, 2014, v. 26, n. 3, p. 894, doi. 10.1105/tpc.113.120881

By:

Wang, Jack P.;
Naik, Punith P.;
Chen, Hsi-Chuan;
Shi, Rui;
Lin, Chien-Yuan;
Liu, Jie;
Shuford, Christopher M.;
Li, Quanzi;
Sun, Ying-Hsuan;
Tunlaya-Anukit, Sermsawat;
Williams, Cranos M.;
Muddiman, David C.;
Ducoste, Joel J.;
Sederoff, Ronald R.;
Chiang, Vincent L.

Publication type:

Article

Systems Biology of Lignin Biosynthesis in Populus trichocarpa: Heteromeric 4-Coumaric Acid:Coenzyme A Ligase Protein Complex Formation, Regulation, and Numerical Modeling.

Published in:

Plant Cell, 2014, v. 26, n. 3, p. 876, doi. 10.1105/tpc.113.119685

By:

Chen, Hsi-Chuan;
Song, Jina;
Wang, Jack P.;
Lin, Ying-Chung;
Ducoste, Joel;
Shuford, Christopher M.;
Liu, Jie;
Li, Quanzi;
Shi, Rui;
Nepomuceno, Angelito;
Isik, Fikret;
Muddiman, David C.;
Williams, Cranos;
Sederoff, Ronald R.;
Chiang, Vincent L.

Publication type:

Article

Part A: Implementing an Analyte Panel and Sampling Protocol for Quality Control in Mass Spectrometry Imaging.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2025, v. 39, n. 8, p. 1, doi. 10.1002/rcm.9993

By:

Mills, Quinn;
Kibbe, Russell R.;
Sohn, Alexandria L.;
Percy, Andrew J.;
Backiel, Krista;
Muddiman, David C.

Publication type:

Article

Part B: SLICE‐MSI—A Machine Learning Interface for System Suitability Testing of Mass Spectrometry Imaging Platforms.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2025, v. 39, n. 8, p. 1, doi. 10.1002/rcm.9990

By:

Kibbe, Russell R.;
Mills, Quinn;
Sohn, Alexandria L.;
Muddiman, David C.

Publication type:

Article

Improved detection in untargeted lipidomics through silver-doped infrared matrix-assisted laser desorption electrospray ionization.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2024, v. 38, n. 15, p. 1, doi. 10.1002/rcm.9832

By:

Eisenberg, Seth M.;
Muddiman, David C.

Publication type:

Article

A statistical approach to system suitability testing for mass spectrometry imaging.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2024, v. 38, n. 9, p. 1, doi. 10.1002/rcm.9725

By:

Sohn, Alexandria L.;
Kibbe, Russell R.;
Dioli, Olivia E.;
Hector, Emily C.;
Bai, Hongxia;
Garrard, Kenneth P.;
Muddiman, David C.

Publication type:

Article

RCM protocols: improving reproducibility in the field of mass spectrometry.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2024, v. 38, p. 1, doi. 10.1002/rcm.9677

By:

Holman, Stephen W.;
Langley, G. John;
Muddiman, David C.;
Novak‐Mitchell, Calum

Publication type:

Article

Evaluating the optimal tissue thickness for mass spectrometry imaging using infrared matrix‐assisted laser desorption electrospray ionization.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2023, v. 37, n. 22, p. 1, doi. 10.1002/rcm.9638

By:

Joignant, Alena N.;
Knizner, Kevan T.;
Xi, Ying;
Muddiman, David C.

Publication type:

Article

RCM protocols: improving reproducibility in the field of mass spectrometry.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2023, v. 38, p. 1, doi. 10.1002/rcm.9677

By:

Holman, Stephen W.;
Langley, G. John;
Muddiman, David C.;
Novak‐Mitchell, Calum

Publication type:

Article

Improved spatial resolution of infrared matrix‐assisted laser desorption electrospray ionization mass spectrometry imaging using a reflective objective.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2022, v. 36, n. 23, p. 1, doi. 10.1002/rcm.9392

By:

Joignant, Alena N.;
Bai, Hongxia;
Manni, Jeffrey G.;
Muddiman, David C.

Publication type:

Article

Developing transmission mode for infrared matrix‐assisted laser desorption electrospray ionization mass spectrometry imaging.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2022, v. 36, n. 22, p. 1, doi. 10.1002/rcm.9386

By:

Joignant, Alena N.;
Bai, Hongxia;
Guymon, Jacob P.;
Garrard, Kenneth P.;
Pankow, Mark;
Muddiman, David C.

Publication type:

Article

Development and validation of a high resolving power absolute quantitative per‐ and polyfluoroalkyl substances method incorporating Skyline data processing.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2022, v. 36, n. 11, p. 1, doi. 10.1002/rcm.9295

By:

Enders, Jeffrey R.;
Weed, Rebecca A.;
Griffith, Emily H.;
Muddiman, David C.

Publication type:

Article

Investigations of β‐carotene radical cation formation in infrared matrix‐assisted laser desorption electrospray ionization (IR‐MALDESI).

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2021, v. 35, n. 16, p. 1, doi. 10.1002/rcm.9133

By:

Bagley, M. Caleb;
Muddiman, David C.

Publication type:

Article

In situ detection of fatty acid C=C positional isomers by coupling on-tissue mCPBA epoxidation with infrared matrixassisted laser desorption electrospray ionization mass spectrometry.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2021, v. 35, n. 13, p. 1, doi. 10.1002/rcm.9119

By:

Anqi Tu;
Garrard, Kenneth P.;
Said, Neveen;
Muddiman, David C.

Publication type:

Article

Development of a relative quantification method for infrared matrix‐assisted laser desorption electrospray ionization mass spectrometry imaging of Arabidopsis seedlings.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2020, v. 34, n. 6, p. N.PAG, doi. 10.1002/rcm.8616

By:

Bagley, M. Caleb;
Stepanova, Anna N.;
Ekelöf, Måns;
Alonso, Jose M.;
Muddiman, David C.

Publication type:

Article

Discriminating normal regions within cancerous hen ovarian tissue using multivariate hyperspectral image analysis.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2019, v. 33, n. 4, p. 381, doi. 10.1002/rcm.8362

By:

Akbari Lakeh, Mahsa;
Tu, Anqi;
Muddiman, David C.;
Abdollahi, Hamid

Publication type:

Article

Direct screening of enzyme activity using infrared matrixassisted laser desorption electrospray ionization.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2017, v. 31, n. 22, p. 1868, doi. 10.1002/rcm.7971

By:

Nazari, Milad;
Ekelöf, Måns;
Khodjaniyazova, Sitora;
Elsen, Nathaniel L.;
Williams, Jon D.;
Muddiman, David C.

Publication type:

Article

Lipidomic profiling of single mammalian cells by infrared matrix-assisted laser desorption electrospray ionization (IR-MALDESI).

Published in:

Analytical & Bioanalytical Chemistry, 2020, v. 412, n. 29, p. 8211, doi. 10.1007/s00216-020-02961-6

By:

Xi, Ying;
Tu, Anqi;
Muddiman, David C.

Publication type:

Article

Enhanced protocol for quantitative N-linked glycomics analysis using Individuality Normalization when Labeling with Isotopic Glycan Hydrazide Tags (INLIGHT)™.

Published in:

Analytical & Bioanalytical Chemistry, 2020, v. 412, n. 27, p. 7569, doi. 10.1007/s00216-020-02892-2

By:

Kalmar, Jaclyn Gowen;
Butler, Karen E.;
Baker, Erin S.;
Muddiman, David C.

Publication type:

Article

Analysis of neurotransmitters in rat placenta exposed to flame retardants using IR-MALDESI mass spectrometry imaging.

Published in:

Analytical & Bioanalytical Chemistry, 2020, v. 412, n. 15, p. 3745, doi. 10.1007/s00216-020-02626-4

By:

Pace, Crystal L.;
Horman, Brian;
Patisaul, Heather;
Muddiman, David C.

Publication type:

Article

Investigating host-pathogen meta-metabolic interactions of Magnaporthe oryzae infected barley using infrared matrix-assisted laser desorption electrospray ionization mass spectrometry.

Published in:

Analytical & Bioanalytical Chemistry, 2020, v. 412, n. 1, p. 139, doi. 10.1007/s00216-019-02216-z

By:

Kalmar, Jaclyn Gowen;
Oh, Yeonyee;
Dean, Ralph A.;
Muddiman, David C.

Publication type:

Article

Systematic evaluation of repeatability of IR-MALDESI-MS and normalization strategies for correcting the analytical variation and improving image quality.

Published in:

Analytical & Bioanalytical Chemistry, 2019, v. 411, n. 22, p. 5729, doi. 10.1007/s00216-019-01953-5

By:

Tu, Anqi;
Muddiman, David C.

Publication type:

Article

IR-MALDESI mass spectrometry imaging of underivatized neurotransmitters in brain tissue of rats exposed to tetrabromobisphenol A.

Published in:

Analytical & Bioanalytical Chemistry, 2018, v. 410, n. 30, p. 7979, doi. 10.1007/s00216-018-1420-0

By:

Bagley, M. Caleb;
Ekelöf, Måns;
Rock, Kylie;
Patisaul, Heather;
Muddiman, David C.

Publication type:

Article

Jürgen H. Gross: Mass spectrometry: a textbook, 3rd ed.

Published in:

2018

By:

Muddiman, David C.

Publication type:

Book Review

Demonstration of hydrazide tagging for O-glycans and a central composite design of experiments optimization using the INLIGHT™ reagent.

Published in:

Analytical & Bioanalytical Chemistry, 2018, v. 410, n. 5, p. 1409, doi. 10.1007/s00216-017-0828-2

By:

King, Samuel R.;
Hecht, Elizabeth S.;
Muddiman, David C.

Publication type:

Article

Direct analysis of terpenes from biological buffer systems using SESI and IR-MALDESI.

Published in:

Analytical & Bioanalytical Chemistry, 2018, v. 410, n. 3, p. 953, doi. 10.1007/s00216-017-0570-9

By:

Nazari, Milad;
Malico, Alexandra A.;
Ekelöf, Måns;
Lund, Sean;
Williams, Gavin J.;
Muddiman, David C.

Publication type:

Article

IR-MALDESI method optimization based on time-resolved measurement of ion yields.

Published in:

Analytical & Bioanalytical Chemistry, 2018, v. 410, n. 3, p. 963, doi. 10.1007/s00216-017-0585-2

By:

Ekelöf, Måns;
Muddiman, David C.

Publication type:

Article

Recent advances in glycomics, glycoproteomics and allied topics.

Published in:

2017

By:

Mechref, Yehia;
Muddiman, David

Publication type:

Editorial

N-linked glycosite profiling and use of Skyline as a platform for characterization and relative quantification of glycans in differentiating xylem of Populus trichocarpa.

Published in:

Analytical & Bioanalytical Chemistry, 2017, v. 409, n. 2, p. 487, doi. 10.1007/s00216-016-9776-5

By:

Loziuk, Philip;
Hecht, Elizabeth;
Muddiman, David

Publication type:

Article

TransOmic analysis of forebrain sections in Sp2 conditional knockout embryonic mice using IR-MALDESI imaging of lipids and LC-MS/MS label-free proteomics.

Published in:

Analytical & Bioanalytical Chemistry, 2016, v. 408, n. 13, p. 3453, doi. 10.1007/s00216-016-9421-3

By:

Loziuk, Philip;
Meier, Florian;
Johnson, Caroline;
Ghashghaei, H.;
Muddiman, David

Publication type:

Article

What if you could only publish 50 papers your entire career?

Published in:

2016

By:

Muddiman, David

Publication type:

Editorial

In-depth LC-MS/MS analysis of the chicken ovarian cancer proteome reveals conserved and novel differentially regulated proteins in humans.

Published in:

Analytical & Bioanalytical Chemistry, 2015, v. 407, n. 22, p. 6851, doi. 10.1007/s00216-015-8862-4

By:

Nepomuceno, Angelito;
Shao, Huanjie;
Jing, Kai;
Ma, Yibao;
Petitte, James;
Idowu, Michael;
Muddiman, David;
Fang, Xianjun;
Hawkridge, Adam

Publication type:

Article