Works matching AU Muddiman, David

Results: 141

Unraveling the molecular dynamics of wound healing: integrating spatially resolved lipidomics and temporally resolved proteomics.

Published in:

Analytical & Bioanalytical Chemistry, 2025, v. 417, n. 15, p. 3299, doi. 10.1007/s00216-025-05865-5

By:

Bai, Hongxia;
Arnedo, Alejandra Suarez;
Liu, Yining;
Segura, Tatiana;
Muddiman, David

Publication type:

Article

Analytical strategies for the global quantification of intact proteins.

Published in:

Amino Acids, 2012, v. 43, n. 3, p. 1109, doi. 10.1007/s00726-012-1285-z

By:

Collier, Timothy;
Muddiman, David

Publication type:

Article

Complete Proteomic-Based Enzyme Reaction and Inhibition Kinetics Reveal How Monolignol Biosynthetic Enzyme Families Affect Metabolic Flux and Lignin in Populus trichocarpa.

Published in:

Plant Cell, 2014, v. 26, n. 3, p. 894, doi. 10.1105/tpc.113.120881

By:

Wang, Jack P.;
Naik, Punith P.;
Chen, Hsi-Chuan;
Shi, Rui;
Lin, Chien-Yuan;
Liu, Jie;
Shuford, Christopher M.;
Li, Quanzi;
Sun, Ying-Hsuan;
Tunlaya-Anukit, Sermsawat;
Williams, Cranos M.;
Muddiman, David C.;
Ducoste, Joel J.;
Sederoff, Ronald R.;
Chiang, Vincent L.

Publication type:

Article

Systems Biology of Lignin Biosynthesis in Populus trichocarpa: Heteromeric 4-Coumaric Acid:Coenzyme A Ligase Protein Complex Formation, Regulation, and Numerical Modeling.

Published in:

Plant Cell, 2014, v. 26, n. 3, p. 876, doi. 10.1105/tpc.113.119685

By:

Chen, Hsi-Chuan;
Song, Jina;
Wang, Jack P.;
Lin, Ying-Chung;
Ducoste, Joel;
Shuford, Christopher M.;
Liu, Jie;
Li, Quanzi;
Shi, Rui;
Nepomuceno, Angelito;
Isik, Fikret;
Muddiman, David C.;
Williams, Cranos;
Sederoff, Ronald R.;
Chiang, Vincent L.

Publication type:

Article

Interrogating the Metabolomic Profile of Amyotrophic Lateral Sclerosis in the Post-Mortem Human Brain by Infrared Matrix-Assisted Laser Desorption Electrospray Ionization (IR-MALDESI) Mass Spectrometry Imaging (MSI).

Published in:

Metabolites (2218-1989), 2022, v. 12, n. 11, p. 1096, doi. 10.3390/metabo12111096

By:

Sohn, Alexandria L.;
Ping, Lingyan;
Glass, Jonathan D.;
Seyfried, Nicholas T.;
Hector, Emily C.;
Muddiman, David C.

Publication type:

Article

Enhancing Metabolomic Coverage in Positive Ionization Mode Using Dicationic Reagents by Infrared Matrix-Assisted Laser Desorption Electrospray Ionization.

Published in:

Metabolites (2218-1989), 2021, v. 11, n. 12, p. 810, doi. 10.3390/metabo11120810

By:

Xi, Ying;
Muddiman, David C.

Publication type:

Article

Enzyme Complexes of Ptr4CL and PtrHCT Modulate Co-enzyme A Ligation of Hydroxycinnamic Acids for Monolignol Biosynthesis in Populus trichocarpa.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.727932

By:

Lin, Chien-Yuan;
Sun, Yi;
Song, Jina;
Chen, Hsi-Chuan;
Shi, Rui;
Yang, Chenmin;
Liu, Jie;
Tunlaya-Anukit, Sermsawat;
Liu, Baoguang;
Loziuk, Philip L.;
Williams, Cranos M.;
Muddiman, David C.;
Lin, Ying-Chung Jimmy;
Sederoff, Ronald R.;
Wang, Jack P.;
Chiang, Vincent L.

Publication type:

Article

Sequencing and Characterization of Larger Oligonucleotides by Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry.

Published in:

Reviews in Analytical Chemistry, 1998, v. 17, n. 1, p. 1

By:

Muddiman, David C.;
Smith, Richard D.

Publication type:

Article

Atmospheric pressure infrared (10.6 µm) laser desorption electrospray ionization (IR-LDESI) coupled to a LTQ Fourier transform ion cyclotron resonance mass spectrometer.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2009, v. 23, n. 13, p. 1989, doi. 10.1002/rcm.4113

By:

Sampson, Jason S.;
Muddiman, David C.

Publication type:

Article

Mass measurement accuracy comparisons between a double-focusing magnetic sector and a time-of-flight mass analyzer.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2008, v. 22, n. 10, p. 1563, doi. 10.1002/rcm.3544

By:

Bereman, Michael S.;
Lyndon, Matthew M.;
Dixon, R. Brent;
Muddiman, David C.

Publication type:

Article

Quantitative comparison of a flared and a standard heated metal capillary inlet with a voltage-assisted air amplifier on an electrospray ionization linear ion trap mass spectrometer.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2007, v. 21, n. 19, p. 3207, doi. 10.1002/rcm.3206

By:

Dixon, R. Brent;
Muddiman, David C.

Publication type:

Article

Direct characterization of intact polypeptides by matrix-assisted laser desorption electrospray ionization quadrupole Fourier transform ion cyclotron resonance mass spectrometry.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2007, v. 21, n. 7, p. 1150, doi. 10.1002/rcm.2947

By:

Sampson, Jason S.;
Hawkridge, Adam M.;
Muddiman, David C.

Publication type:

Article

Understanding the influence of post-excite radius and axial confinement on quantitative proteomic measurements using Fourier transform ion cyclotron resonance mass spectrometry.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2007, v. 21, n. 7, p. 1196, doi. 10.1002/rcm.2957

By:

Frahm, Jennifer L.;
Velez, Coral M. Capo;
Muddiman, David C.

Publication type:

Article

Effect of matrix crystal structure on ion abundance of carbohydrates by matrix-assisted laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometry.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2007, v. 21, n. 5, p. 807, doi. 10.1002/rcm.2904

By:

Williams, Taufika Islam;
Saggese, Diana A.;
Wilcox, Robert J.;
Martin, James D.;
Muddiman, David C.

Publication type:

Article

Direct high-resolution peptide and protein analysis by desorption electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2006, v. 20, n. 22, p. 3409, doi. 10.1002/rcm.2759

By:

Bereman, Michael S.;
Nyadong, Leonard;
Fernandez, Facundo M.;
Muddiman, David C.

Publication type:

Article

Normalization of relative peptide ratios derived from in-gel digests: applications to protein variant analysis at the peptide level.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2005, v. 19, n. 19, p. 2871, doi. 10.1002/rcm.2134

By:

Bergen, H. Robert;
Muddiman, David C.;
O'Brien, John F.;
Hoyer, James D.

Publication type:

Article

Effect of post-excitation radius on ion abundance, mass measurement accuracy, and isotopic distributions in Fourier transform ion cyclotron resonance mass spectrometry.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2005, v. 19, n. 7, p. 915, doi. 10.1002/rcm.1871

By:

Hawkridge, Adam M.;
Nepomuceno, Angelito I.;
Lovik, Stephanie L.;
Mason, Christopher J.;
Muddiman, David C.

Publication type:

Article

Informed use of proteolytic inhibitors in biomarker discovery.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2004, v. 18, n. 9, p. 1001, doi. 10.1002/rcm.1439

By:

Bergen, H. Robert;
Klug, Michael G.;
Bolander, Mark E.;
Muddiman, David C.

Publication type:

Article

Enzymatic strategies for the characterization of nucleic acids by electrospray ionization mass spectrometry (These researchers contributed equally to this work.).

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2003, v. 17, n. 24, p. 2699, doi. 10.1002/rcm.1255

By:

Allison P. Null;
Linda M. Benson;
David C. Muddiman

Publication type:

Article

Determination of a correction to improve mass measurement accuracy of isotopically unresolved polymerase chain reaction amplicons by electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2003, v. 17, n. 15, p. 1714, doi. 10.1002/rcm.1111

By:

Allison P. Null;
David C. Muddiman

Publication type:

Article

Mass spectral determination of skeletal/cardiac actin isoform ratios in cardiac muscle.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2003, v. 17, n. 13, p. 1467, doi. 10.1002/rcm.1075

By:

Bergen, H. Robert;
Ajtai, Katalin;
Burghardt, Thomas P.;
Nepomuceno, Angelito I.;
Muddiman, David C.

Publication type:

Article

Improved low-energy electron injection systems for high rate electron capture dissociation in Fourier transform ion cyclotron resonance mass spectrometry.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2001, v. 15, n. 19, p. 1849, doi. 10.1002/rcm.448

By:

Tsybin, Youri O.;
Håkansson, Per;
Budnik, Bogdan A.;
Haselmann, Kim F.;
Kjeldsen, Frank;
Gorshkov, Michael;
Zubarev, Roman A.;
Muddiman, David C.

Publication type:

Article

Genotyping short tandem repeats using flow injection and electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2001, v. 15, n. 5, p. 348, doi. 10.1002/rcm.234

By:

Hannis, James C.;
Muddiman, David C.

Publication type:

Article

Precise mass measurement of a double-stranded 500 base-pair (309 kDa) polymerase chain reaction product by negative ion electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 1999, v. 13, n. 12, p. 1201, doi. 10.1002/(SICI)1097-0231(19990630)13:12<1201::AID-RCM643>3.0.CO;2-X

By:

Muddiman, David C.;
Null, Allison P.;
Hannis, James C.

Publication type:

Article

Accurate characterization of the tyrosine hydroxylase forensic allele 9.3 through development of electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 1999, v. 13, n. 10, p. 954, doi. 10.1002/(SICI)1097-0231(19990530)13:10<954::AID-RCM593>3.0.CO;2-R

By:

Hannis, James C.;
Muddiman, David C.

Publication type:

Article

Characterization of a microdialysis approach to prepare polymerase chain reaction products for electrospray ionization mass spectrometry using on-line ultraviolet absorbance measurements and inductively coupled plasma-atomic emission spectroscopy.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 1999, v. 13, n. 5, p. 323, doi. 10.1002/(SICI)1097-0231(19990315)13:5<323::AID-RCM485>3.0.CO;2-B

By:

Hannis, James C.;
Muddiman, David C.;
Johnston, Murray V.

Publication type:

Article

Quantification of singly charged biomolecules by electrospray ionization fourier transform ion cyclotron resonance mass spectrometry utilizing an internal standard.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 1999, v. 13, n. 3, p. 164, doi. 10.1002/(SICI)1097-0231(19990215)13:3<164::AID-RCM474>3.0.CO;2-L

By:

Gordon, Eric F.;
Muddiman, David C.;
Hofstadler, Steven A.

Publication type:

Article

Comprehensive nomenclature for the fragment ions produced from collisional activation of peptide nucleic acids.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 1998, v. 12, n. 12, p. 759, doi. 10.1002/(SICI)1097-0231(19980630)12:12<759::AID-RCM228>3.0.CO;2-E

By:

Flora, Jason W.;
Muddiman, David C.

Publication type:

Article

Identification of alternative splice variants in Aspergillus flavus through comparison of multiple tandem MS search algorithms.

Published in:

BMC Genomics, 2011, v. 12, n. 1, p. 358, doi. 10.1186/1471-2164-12-358

By:

Kung-Yen Chang;
Muddiman, David C.

Publication type:

Article

The development and application of matrix assisted laser desorption electrospray ionization: The teenage years.

Published in:

Mass Spectrometry Reviews, 2023, v. 42, n. 1, p. 35, doi. 10.1002/mas.21696

By:

Caleb Bagley, Michael;
Garrard, Kenneth P.;
Muddiman, David C.

Publication type:

Article

Phosphorylation-dependent proteome of Marcks in ependyma during aging and behavioral homeostasis in the mouse forebrain.

Published in:

GeroScience, 2022, v. 44, n. 4, p. 2077, doi. 10.1007/s11357-022-00517-3

By:

Muthusamy, Nagendran;
Williams, Taufika I.;
O'Toole, Ryan;
Brudvig, Jon J.;
Adler, Kenneth B.;
Weimer, Jill M.;
Muddiman, David C.;
Ghashghaei, H. Troy

Publication type:

Article

Polyubiquitin Is Required for Growth, Development and Pathogenicity in the Rice Blast Fungus Magnaporthe oryzae.

Published in:

PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0042868

By:

Oh, Yeonyee;
Franck, William L.;
Han, Sang-Oh;
Shows, Angela;
Gokce, Emine;
Muddiman, David C.;
Dean, Ralph A.;
Nielsen, Kirsten

Publication type:

Article

Topographic imaging with automatic z-axis correction of Brassica oleracea var. viridis leaves by IR-MALDESI mass spectrometry imaging.

Published in:

Analytical & Bioanalytical Chemistry, 2025, v. 417, n. 11, p. 2321, doi. 10.1007/s00216-025-05820-4

By:

Mills, Quinn;
Ashbacher, Sarah M.;
Sohn, Alexandria L.;
Muddiman, David C.

Publication type:

Article

Three-dimensional mass spectrometry imaging (3D MSI): incorporating top-hat IR-MALDESI and automatic z-axis correction: Three-dimensional mass spectrometry imaging (3D MSI): incorporating top-hat IR-MALDESI and automatic z-axis correction: A. L. Sohn et al

Published in:

Analytical & Bioanalytical Chemistry, 2025, v. 417, n. 8, p. 1649, doi. 10.1007/s00216-025-05755-w

By:

Sohn, Alexandria L.;
Witherspoon, John G.;
Smart, Robert C.;
Muddiman, David C.

Publication type:

Article

Quantitative sampling by IR-MALDESI is not susceptible to tissue heterogeneity in a multi-organ model: Quantitative sampling by IR-MALDESI is not susceptible to tissue heterogeneity in a multi-organ model: Joignant et al.

Published in:

Analytical & Bioanalytical Chemistry, 2025, v. 417, n. 1, p. 83, doi. 10.1007/s00216-024-05653-7

By:

Joignant, Alena N.;
Hector, Emily C.;
Barnes, Morgan M.;
Kullman, Seth W.;
Muddiman, David C.

Publication type:

Article

Rigorous scientific inquiry guided by creativity, curiosity and support: One of the last Renaissance scientists of our time.

Published in:

Analytical & Bioanalytical Chemistry, 2024, v. 416, n. 22, p. 4819, doi. 10.1007/s00216-024-05417-3

By:

Muddiman, David C.;
Hittle, Lucinda R.

Publication type:

Article

Optimizing neurotransmitter pathway detection by IR-MALDESI-MSI in mouse brain.

Published in:

Analytical & Bioanalytical Chemistry, 2024, v. 416, n. 18, p. 4207, doi. 10.1007/s00216-024-05354-1

By:

Wang, Mary F.;
Ouyang, Yunxin;
Segura, Tatiana;
Muddiman, David C.

Publication type:

Article

Comparative analysis of sucrose-embedding for whole-body zebrafish MSI by IR-MALDESI.

Published in:

Analytical & Bioanalytical Chemistry, 2023, v. 415, n. 26, p. 6389, doi. 10.1007/s00216-023-04914-1

By:

Wang, Mary F.;
Ritter, Morgan M.;
Kullman, Seth W.;
Muddiman, David C.

Publication type:

Article

Hierarchical Self-Assembly of Supramolecular Hydrophobic Metallacycles into Ordered Nanostructures.

Published in:

Chemistry - An Asian Journal, 2014, v. 9, n. 10, p. 2928, doi. 10.1002/asia.201402410

By:

Zhang, Jing;
Marega, Riccardo;
Chen, Li ‐ Jun;
Wu, Nai ‐ Wei;
Xu, Xing ‐ Dong;
Muddiman, David C.;
Bonifazi, Davide;
Yang, Hai ‐ Bo

Publication type:

Article

Heterogeneous antiretroviral drug distribution and HIV/SHIV detection in the gut of three species.

Published in:

Science Translational Medicine, 2019, v. 11, n. 499, p. 1, doi. 10.1126/scitranslmed.aap8758

By:

Thompson, Corbin G.;
Rosen, Elias P.;
Prince, Heather M. A.;
White, Nicole;
Sykes, Craig;
de la Cruz, Gabriela;
Mathews, Michelle;
Deleage, Claire;
Estes, Jacob D.;
Charlins, Paige;
Mulder, Leila R.;
Kovarova, Martina;
Adamson, Lourdes;
Arora, Shifali;
Dellon, Evan S.;
Peery, Anne F.;
Shaheen, Nicholas J.;
Gay, Cynthia;
Muddiman, David C.;
Akkina, Ramesh

Publication type:

Article

Comparative proteomic analysis between nitrogen supplemented and starved conditions in Magnaporthe oryzae.

Published in:

Proteome Science, 2017, v. 15, p. 1, doi. 10.1186/s12953-017-0128-y

By:

Oh, Yeonyee;
Robertson, Suzanne L.;
Parker, Jennifer;
Muddiman, David C.;
Dean, Ralph A.

Publication type:

Article

Spatially resolved metabolomic characterization of muscle invasive bladder cancer by mass spectrometry imaging.

Published in:

Metabolomics, 2021, v. 17, n. 8, p. 1, doi. 10.1007/s11306-021-01819-x

By:

Tu, Anqi;
Said, Neveen;
Muddiman, David C.

Publication type:

Article

Part A: Implementing an Analyte Panel and Sampling Protocol for Quality Control in Mass Spectrometry Imaging.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2025, v. 39, n. 8, p. 1, doi. 10.1002/rcm.9993

By:

Mills, Quinn;
Kibbe, Russell R.;
Sohn, Alexandria L.;
Percy, Andrew J.;
Backiel, Krista;
Muddiman, David C.

Publication type:

Article

Part B: SLICE‐MSI—A Machine Learning Interface for System Suitability Testing of Mass Spectrometry Imaging Platforms.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2025, v. 39, n. 8, p. 1, doi. 10.1002/rcm.9990

By:

Kibbe, Russell R.;
Mills, Quinn;
Sohn, Alexandria L.;
Muddiman, David C.

Publication type:

Article

Improved detection in untargeted lipidomics through silver-doped infrared matrix-assisted laser desorption electrospray ionization.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2024, v. 38, n. 15, p. 1, doi. 10.1002/rcm.9832

By:

Eisenberg, Seth M.;
Muddiman, David C.

Publication type:

Article

A statistical approach to system suitability testing for mass spectrometry imaging.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2024, v. 38, n. 9, p. 1, doi. 10.1002/rcm.9725

By:

Sohn, Alexandria L.;
Kibbe, Russell R.;
Dioli, Olivia E.;
Hector, Emily C.;
Bai, Hongxia;
Garrard, Kenneth P.;
Muddiman, David C.

Publication type:

Article

RCM protocols: improving reproducibility in the field of mass spectrometry.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2024, v. 38, p. 1, doi. 10.1002/rcm.9677

By:

Holman, Stephen W.;
Langley, G. John;
Muddiman, David C.;
Novak‐Mitchell, Calum

Publication type:

Article

Evaluating the optimal tissue thickness for mass spectrometry imaging using infrared matrix‐assisted laser desorption electrospray ionization.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2023, v. 37, n. 22, p. 1, doi. 10.1002/rcm.9638

By:

Joignant, Alena N.;
Knizner, Kevan T.;
Xi, Ying;
Muddiman, David C.

Publication type:

Article

RCM protocols: improving reproducibility in the field of mass spectrometry.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2023, v. 38, p. 1, doi. 10.1002/rcm.9677

By:

Holman, Stephen W.;
Langley, G. John;
Muddiman, David C.;
Novak‐Mitchell, Calum

Publication type:

Article

Improved spatial resolution of infrared matrix‐assisted laser desorption electrospray ionization mass spectrometry imaging using a reflective objective.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2022, v. 36, n. 23, p. 1, doi. 10.1002/rcm.9392

By:

Joignant, Alena N.;
Bai, Hongxia;
Manni, Jeffrey G.;
Muddiman, David C.

Publication type:

Article