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Dual‐wield NTPases: A novel protein family mined from AlphaFold DB.
- Published in:
- Protein Science: A Publication of the Protein Society, 2024, v. 33, n. 4, p. 1, doi. 10.1002/pro.4934
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- Article
How AlphaFold2 Predicts Conditionally Folding Regions Annotated in an Intrinsically Disordered Protein Database, IDEAL.
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- Biology (2079-7737), 2023, v. 12, n. 2, p. 182, doi. 10.3390/biology12020182
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- Article
Prediction of chaperonin GroE substrates using small structural patterns of proteins.
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- FEBS Open Bio, 2023, v. 13, n. 4, p. 779, doi. 10.1002/2211-5463.13590
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- Article
Evaluating cepharanthine analogues as natural drugs against SARS‐CoV‐2.
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- FEBS Open Bio, 2022, v. 12, n. 1, p. 285, doi. 10.1002/2211-5463.13337
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- Article
IDEAL in 2014 illustrates interaction networks composed of intrinsically disordered proteins and their binding partners.
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- Nucleic Acids Research, 2014, v. 42, n. D1, p. D320, doi. 10.1093/nar/gkt1010
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- Article
Two Distinct Mechanisms for Actin Capping Protein Regulation--Steric and Allosteric Inhibition.
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- PLoS Biology, 2010, v. 8, n. 7, p. 1, doi. 10.1371/journal.pbio.1000416
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- Article
MICAN-SQ: a sequential protein structure alignment program that is applicable to monomers and all types of oligomers.
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- Bioinformatics, 2018, v. 34, n. 19, p. 3324, doi. 10.1093/bioinformatics/bty369
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- Article
Crystal structure of human V‐1 in the apo form.
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- Acta Crystallographica: Section F, Structural Biology Communications, 2021, v. 77, n. 1, p. 13, doi. 10.1107/S2053230X20016829
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- Article
SCPC: a method to structurally compare protein complexes.
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- Bioinformatics, 2012, v. 28, n. 3, p. 324, doi. 10.1093/bioinformatics/btr654
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- Article
P-cats: prediction of catalytic residues in proteins from their tertiary structures.
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- Bioinformatics, 2005, v. 21, n. 17, p. 3570, doi. 10.1093/bioinformatics/bti561
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- Article
Knowledge‐based structural models of SARS‐CoV‐2 proteins and their complexes with potential drugs.
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- FEBS Letters, 2020, v. 594, n. 12, p. 1960, doi. 10.1002/1873-3468.13806
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- Article
Elastic network model reveals distinct flexibilities of capping proteins bound to CARMIL and twinfilin‐tail.
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- Proteins, 2024, v. 92, n. 1, p. 37, doi. 10.1002/prot.26560
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- Article
Comprehensive analysis of motions in molecular dynamics trajectories of the actin capping protein and its inhibitor complexes.
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- Proteins, 2016, v. 84, n. 7, p. 948, doi. 10.1002/prot.25043
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- Publication type:
- Article
Hierarchical domain-motion analysis of conformational changes in sarcoplasmic reticulum Ca<sup>2+</sup>-ATPase.
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- Proteins, 2015, v. 83, n. 4, p. 746, doi. 10.1002/prot.24763
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- Article
Substrate-shielding and hydrolytic reaction in hydrolases.
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- Proteins, 2013, v. 81, n. 6, p. 926, doi. 10.1002/prot.24253
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- Article
Cover and spacer insertions: Small nonhydrophobic accessories that assist protein oligomerization.
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- Proteins, 2011, v. 79, n. 8, p. 2372, doi. 10.1002/prot.23084
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- Article
Amino acid substitutions at protein-protein interfaces that modulate the oligomeric state.
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- Proteins, 2010, v. 78, n. 6, p. 1563, doi. 10.1002/prot.22673
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- Article
An enhanced partial order curve comparison algorithm and its application to analyzing protein folding trajectories.
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- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-344
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- Article
Accidental Interaction between PDZ Domains and Diclofenac Revealed by NMR-Assisted Virtual Screening.
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- Molecules, 2013, v. 18, n. 8, p. 9567, doi. 10.3390/molecules18089567
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- Article
A novel biclustering approach with iterative optimization to analyze gene expression data.
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- Advances & Applications in Bioinformatics & Chemistry, 2012, v. 5, p. 23, doi. 10.2147/AABC.S32622
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- Article
Influence of Structural Symmetry on Protein Dynamics.
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- PLoS ONE, 2012, v. 7, n. 11, p. 1, doi. 10.1371/journal.pone.0050011
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- Article
Current status of structure-based drug repurposing against COVID-19 by targeting SARS-CoV-2 proteins.
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- Biophysics & Physicobiology, 2021, v. 18, n. 1, p. 226, doi. 10.2142/biophysico.bppb-v18.025
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- Article
All Atom Motion Tree detects side chain-related motions and their coupling with domain motion in proteins.
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- Biophysics & Physicobiology, 2019, v. 16, n. 1, p. 280, doi. 10.2142/biophysico.16.0_280
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- Article
Identification of amino acids involved in protein structural uniqueness: implication for de novo protein design.
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- Protein Engineering, 2002, v. 15, n. 7, p. 555, doi. 10.1093/protein/15.7.555
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- Article
Knowledge-based potential defined for a rotamer library to design protein sequences.
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- Protein Engineering, 2001, v. 14, n. 8, p. 557, doi. 10.1093/protein/14.8.557
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- Article
Experimental verification of the `stability profile of mutant protein' (SPMP) data using mutant human lysozymes.
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- Protein Engineering, 1999, v. 12, n. 8, p. 663, doi. 10.1093/protein/12.8.663
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- Article
Classification of proteins inducing liquid–liquid phase separation: sequential, structural and functional characterization.
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- Journal of Biochemistry, 2023, v. 17, n. 4, p. 255, doi. 10.1093/jb/mvac106
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- Article
Remarkable improvement in the heat stability of CutA1 from Escherichia coli by rational protein design.
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- Journal of Biochemistry, 2010, v. 148, n. 4, p. 449, doi. 10.1093/jb/mvq079
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- Article
Stabilization Mechanism of the Tryptophan Synthase α-Subunit from Thermus thermophilus HB8: X-Ray Crystallographic Analysis and Calorimetry.
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- Journal of Biochemistry, 2005, v. 138, n. 4, p. 343, doi. 10.1093/jb/mvi133
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- Article
Protein kinases phosphorylate long disordered regions in intrinsically disordered proteins.
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- Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 2, p. 564, doi. 10.1002/pro.3789
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- Article
Using <sup>1</sup>H<sup>N</sup> amide temperature coefficients to define intrinsically disordered regions: An alternative NMR method.
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- Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 10, p. 1821, doi. 10.1002/pro.3485
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- Article
Rules for connectivity of secondary structure elements in protein: Two-layer αβ sandwiches.
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- Protein Science: A Publication of the Protein Society, 2017, v. 26, n. 11, p. 2257, doi. 10.1002/pro.3285
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- Article
Alteration of oligomeric state and domain architecture is essential for functional transformation between transferase and hydrolase with the same scaffold.
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- Protein Science: A Publication of the Protein Society, 2009, v. 18, n. 10, p. 2060, doi. 10.1002/pro.218
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- Article
Crystal structure of the conserved protein TT1542 from Thermus thermophilus HB8.
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- Protein Science: A Publication of the Protein Society, 2003, v. 12, n. 8, p. 1621, doi. 10.1110/gad.03104003
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- Article
Feasibility in the inverse protein folding protocol.
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- Protein Science: A Publication of the Protein Society, 1999, v. 8, n. 5, p. 1001
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- Article
IDEAL: Intrinsically Disordered proteins with Extensive Annotations and Literature.
- Published in:
- Nucleic Acids Research, 2012, p. D507, doi. 10.1093/nar/gkr884
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- Article
PSCDB: a database for protein structural change upon ligand binding.
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- Nucleic Acids Research, 2012, p. D554, doi. 10.1093/nar/gkr966
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- Article
SAHG, a comprehensive database of predicted structures of all human proteins.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D487, doi. 10.1093/nar/gkq1057
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- Article
GTOP: a database of protein structures predicted from genome sequences.
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- Nucleic Acids Research, 2002, v. 30, n. 1, p. 294, doi. 10.1093/nar/30.1.294
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- Publication type:
- Article
Discovery of Cryoprotective Activity in Human Genome-Derived Intrinsically Disordered Proteins.
- Published in:
- International Journal of Molecular Sciences, 2018, v. 19, n. 2, p. 401, doi. 10.3390/ijms19020401
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- Article
A Method for Systematic Assessment of Intrinsically Disordered Protein Regions by NMR.
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- International Journal of Molecular Sciences, 2015, v. 16, n. 7, p. 15743, doi. 10.3390/ijms160715743
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- Article
Erratum: Investigation of the fatty acid transporter-encoding genes SLC27A3 and SLC27A4 in autism.
- Published in:
- Scientific Reports, 2016, p. 20268, doi. 10.1038/srep20268
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- Article
Investigation of the fatty acid transporter-encoding genes SLC27A3 and SLC27A4 in autism.
- Published in:
- Scientific Reports, 2015, p. 16239, doi. 10.1038/srep16239
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- Article
DNA Data Bank of Japan (DDBJ) in collaboration with mass sequencing teams.
- Published in:
- Nucleic Acids Research, 2000, v. 28, n. 1, p. 24, doi. 10.1093/nar/28.1.24
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- Article
The Protein Mutant Database.
- Published in:
- Nucleic Acids Research, 1999, v. 27, n. 1, p. 355, doi. 10.1093/nar/27.1.355
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- Article
Multiple-Localization and Hub Proteins.
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- PLoS ONE, 2016, v. 11, n. 6, p. 1, doi. 10.1371/journal.pone.0156455
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- Article
Genes from Nine Genomes Are Separated into Their Organisms in the Dinucleotide Composition Space.
- Published in:
- DNA Research, 1998, v. 5, n. 5, p. 251, doi. 10.1093/dnares/5.5.251
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- Article
X-Ray Crystalline Structures of Pyrrolidone Carboxyl Peptidase from a Hyperthermophile, Pyrococcus furiosus, and Its Cys-Free Mutant.
- Published in:
- Journal of Biochemistry, 2001, v. 130, n. 1, p. 107, doi. 10.1093/oxfordjournals.jbchem.a002948
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- Article
Cooperative approach for the protein fold recognition.
- Published in:
- Proteins, 1999, v. 37, n. S3, p. 126, doi. 10.1002/(SICI)1097-0134(1999)37:3+<126::AID-PROT17>3.0.CO;2-8
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- Article