Works by Moss, Walter N.

Results: 33

Isoenergetic penta- and hexanucleotide microarray probing and chemical mapping provide a secondary structure model for an RNA element orchestrating R2 retrotransposon protein function.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 6, p. 1770, doi. 10.1093/nar/gkm1085

By:

Kierzek, Elzbieta;
Kierzek, Ryszard;
Moss, Walter N.;
Christensen, Shawn M.;
Eickbush, Thomas H.;
Turner, Douglas H.

Publication type:

Article

Analysis of a structured intronic region of the LMP2 pre-mRNA from EBV reveals associations with human regulatory proteins and nuclear actin.

Published in:

BMC Research Notes, 2019, v. 12, n. 1, p. N.PAG, doi. 10.1186/s13104-019-4070-1

By:

Kumarasinghe, Nuwanthika;
Moss, Walter N.

Publication type:

Article

Identification of MYC intron 2 regions that modulate expression.

Published in:

PLoS ONE, 2024, v. 19, n. 1, p. 1, doi. 10.1371/journal.pone.0296889

By:

Tompkins, Van S.;
Xue, Zheng;
Peterson, Jake M.;
Rouse, Warren B.;
O'Leary, Collin A.;
Moss, Walter N.

Publication type:

Article

Intronic RNA secondary structural information captured for the human MYC pre-mRNA.

Published in:

NAR Genomics & Bioinformatics, 2024, v. 6, n. 4, p. 1, doi. 10.1093/nargab/lqae143

By:

Eich, Taylor O;
O'Leary, Collin A;
Moss, Walter N

Publication type:

Article

Thermodynamic and structural characterization of an EBV infected B-cell lymphoma transcriptome.

Published in:

NAR Genomics & Bioinformatics, 2022, v. 4, n. 4, p. 1, doi. 10.1093/nargab/lqac082

By:

O'Leary, Collin A;
Van Tompkins, S;
Rouse, Warren B;
Nam, Gijong;
Moss, Walter N

Publication type:

Article

Prediction and analysis of functional RNA structures within the integrative genomics viewer.

Published in:

NAR Genomics & Bioinformatics, 2022, v. 4, n. 1, p. 1, doi. 10.1093/nargab/lqab127

By:

Rouse, Warren B;
Andrews, Ryan J;
Booher, Nicholas J;
Wang, Jibo;
Woodman, Michael E;
Dow, Ernst R;
Jessop, Theodore C;
Moss, Walter N

Publication type:

Article

Genome-wide analyses of Epstein-Barr virus reveal conserved RNA structures and a novel stable intronic sequence RNA.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-543

By:

Moss, Walter N.;
Steitz, Joan A.

Publication type:

Article

Self-Folding of Naked Segment 8 Genomic RNA of Influenza A Virus.

Published in:

PLoS ONE, 2016, v. 11, n. 2, p. 1, doi. 10.1371/journal.pone.0148281

By:

Lenartowicz, Elzbieta;
Kesy, Julita;
Ruszkowska, Agnieszka;
Soszynska-Jozwiak, Marta;
Michalak, Paula;
Moss, Walter N.;
Turner, Douglas H.;
Kierzek, Ryszard;
Kierzek, Elzbieta

Publication type:

Article

The RNA encoding the microtubule-associated protein tau has extensive structure that affects its biology.

Published in:

PLoS ONE, 2019, v. 14, n. 7, p. 1, doi. 10.1371/journal.pone.0219210

By:

Chen, Jonathan L.;
Moss, Walter N.;
Spencer, Adam;
Zhang, Peiyuan;
Childs-Disney, Jessica L.;
Disney, Matthew D.

Publication type:

Article

RNA structural analysis of the MYC mRNA reveals conserved motifs that affect gene expression.

Published in:

PLoS ONE, 2019, v. 14, n. 6, p. 1, doi. 10.1371/journal.pone.0213758

By:

O’Leary, Collin A.;
Andrews, Ryan J.;
Tompkins, Van S.;
Chen, Jonathan L.;
Childs-Disney, Jessica L.;
Disney, Matthew D.;
Moss, Walter N.

Publication type:

Article

The Epstein Barr virus circRNAome.

Published in:

PLoS Pathogens, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.ppat.1007206

By:

Ungerleider, Nathan;
Concha, Monica;
Lin, Zhen;
Roberts, Claire;
Wang, Xia;
Cao, Subing;
Baddoo, Melody;
Moss, Walter N.;
Yu, Yi;
Seddon, Michael;
Lehman, Terri;
Tibbetts, Scott;
Renne, Rolf;
Dong, Yan;
Flemington, Erik K.

Publication type:

Article

Secondary structure model of the naked segment 7 influenza A virus genomic RNA.

Published in:

Biochemical Journal, 2016, v. 473, n. 23, p. 4327, doi. 10.1042/BCJ20160651

By:

Ruszkowska, Agnieszka;
Lenartowicz, Elzbieta;
Moss, Walter N.;
Kierzek, Ryszard;
Kierzek, Elzbieta

Publication type:

Article

In silico analysis of local RNA secondary structure in influenza virus A, B and C finds evidence of widespread ordered stability but little evidence of significant covariation.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-021-03767-x

By:

Peterson, Jake M.;
O'Leary, Collin A.;
Moss, Walter N.

Publication type:

Article

Analyses of human cancer driver genes uncovers evolutionarily conserved RNA structural elements involved in posttranscriptional control.

Published in:

PLoS ONE, 2022, v. 18, n. 2, p. 1, doi. 10.1371/journal.pone.0264025

By:

Tompkins, Van S.;
Rouse, Warren B.;
O'Leary, Collin A.;
Andrews, Ryan J.;
Moss, Walter N.

Publication type:

Article

RNA families in Epstein-Barr virus.

Published in:

RNA Biology, 2014, v. 11, n. 1, p. 1, doi. 10.4161/rna.27488

By:

Moss, Walter N.;
Lee, Nara;
Pimienta, Genaro;
Steitz, Joan A.

Publication type:

Article

The influenza A segment 7 mRNA 3' splice site pseudoknot/hairpin family.

Published in:

RNA Biology, 2012, v. 9, n. 11, p. 1, doi. 10.4161/rna.22343

By:

Moss, Walter N.;
Dela-Moss, Lumbini I.;
Priore, Salvatore F.;
Turner, Douglas H.

Publication type:

Article

Secondary Structure of Influenza A Virus Genomic Segment 8 RNA Folded in a Cellular Environment.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 5, p. 2452, doi. 10.3390/ijms23052452

By:

Szutkowska, Barbara;
Wieczorek, Klaudia;
Kierzek, Ryszard;
Zmora, Pawel;
Peterson, Jake M.;
Moss, Walter N.;
Mathews, David H.;
Kierzek, Elzbieta

Publication type:

Article

Identification of conserved RNA secondary structures at influenza B and C splice sites reveals similarities and differences between influenza A, B, and C.

Published in:

BMC Research Notes, 2014, v. 7, n. 1, p. 1, doi. 10.1186/1756-0500-7-22

By:

Dela-Moss, Lumbini I.;
Moss, Walter N.;
Turner, Douglas H.

Publication type:

Article

Influenza B virus has global ordered RNA structure in (+) and (-) strands but relatively less stable predicted RNA folding free energy than allowed by the encoded protein sequence.

Published in:

BMC Research Notes, 2013, v. 6, n. 1, p. 1, doi. 10.1186/1756-0500-6-330

By:

Priore, Salvatore F.;
Moss, Walter N.;
Turner, Douglas H.

Publication type:

Article

Secondary Structure of Subgenomic RNA M of SARS-CoV-2.

Published in:

Viruses (1999-4915), 2022, v. 14, n. 2, p. 322, doi. 10.3390/v14020322

By:

Soszynska-Jozwiak, Marta;
Ruszkowska, Agnieszka;
Kierzek, Ryszard;
O'Leary, Collin A.;
Moss, Walter N.;
Kierzek, Elzbieta

Publication type:

Article

Conserved Structural Motifs of Two Distant IAV Subtypes in Genomic Segment 5 RNA.

Published in:

Viruses (1999-4915), 2021, v. 13, n. 3, p. 525, doi. 10.3390/v13030525

By:

Michalak, Paula;
Piasecka, Julita;
Szutkowska, Barbara;
Kierzek, Ryszard;
Biala, Ewa;
Moss, Walter N.;
Kierzek, Elzbieta;
Perez, Daniel R

Publication type:

Article

A Conserved Secondary Structural Element in the Coding Region of the Influenza A Virus Nucleoprotein (NP) mRNA Is Important for the Regulation of Viral Proliferation.

Published in:

PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0141132

By:

Soszynska-Jozwiak, Marta;
Michalak, Paula;
Moss, Walter N.;
Kierzek, Ryszard;
Kierzek, Elzbieta

Publication type:

Article

Secondary Structure of a Conserved Domain in the Intron of Influenza A NS1 mRNA.

Published in:

PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0070615

By:

Priore, Salvatore F.;
Kierzek, Elzbieta;
Kierzek, Ryszard;
Baman, Jayson R.;
Moss, Walter N.;
Dela-Moss, Lumbini I.;
Turner, Douglas H.

Publication type:

Article

The 3' Splice Site of Influenza A Segment 7 mRNA Can Exist in Two Conformations: A Pseudoknot and a Hairpin.

Published in:

PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0038323

By:

Moss, Walter N.;
Dela-Moss, Lumbini I.;
Kierzek, Elzbieta;
Kierzek, Ryszard;
Priore, Salvatore F.;
Turner, Douglas H.

Publication type:

Article

Influenza A Virus Coding Regions Exhibit Host-Specific Global Ordered RNA Structure.

Published in:

PLoS ONE, 2012, v. 7, n. 4, p. 1, doi. 10.1371/journal.pone.0035989

By:

Priore, Salvatore F.;
Moss, Walter N.;
Turner, Douglas H.

Publication type:

Article

In vivo secondary structural analysis of Influenza A virus genomic RNA.

Published in:

Cellular & Molecular Life Sciences, 2023, v. 80, n. 5, p. 1, doi. 10.1007/s00018-023-04764-1

By:

Mirska, Barbara;
Woźniak, Tomasz;
Lorent, Dagny;
Ruszkowska, Agnieszka;
Peterson, Jake M.;
Moss, Walter N.;
Mathews, David H.;
Kierzek, Ryszard;
Kierzek, Elzbieta

Publication type:

Article

Probing Xist RNA Structure in Cells Using Targeted Structure-Seq.

Published in:

PLoS Genetics, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pgen.1005668

By:

Fang, Rui;
Moss, Walter N.;
Rutenberg-Schoenberg, Michael;
Simon, Matthew D.

Publication type:

Article

ScanFold 2.0: a rapid approach for identifying potential structured RNA targets in genomes and transcriptomes.

Published in:

PeerJ, 2022, p. 1, doi. 10.7717/peerj.14361

By:

Andrews, Ryan J.;
Rouse, Warren B.;
O'Leary, Collin A.;
Booher, Nicholas J.;
Moss, Walter N.

Publication type:

Article

A survey of RNA secondary structural propensity encoded within human herpesvirus genomes: global comparisons and local motifs.

Published in:

PeerJ, 2020, p. 1, doi. 10.7717/peerj.9882

By:

Andrews, Ryan J.;
O'Leary, Collin A.;
Moss, Walter N.

Publication type:

Article

ScanFold: an approach for genome-wide discovery of local RNA structural elements—applications to Zika virus and HIV.

Published in:

PeerJ, 2018, p. 1, doi. 10.7717/peerj.6136

By:

Andrews, Ryan J.;
Roche, Julien;
Moss, Walter N.

Publication type:

Article

Expansion of the RNAStructuromeDB to include secondary structural data spanning the human protein-coding transcriptome.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-18699-3

By:

Rouse, Warren B.;
O'Leary, Collin A.;
Booher, Nicholas J.;
Moss, Walter N.

Publication type:

Article

The RNA secondary structure of androgen receptor-FL and V7 transcripts reveals novel regulatory regions.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 11, p. 6596, doi. 10.1093/nar/gkae220

By:

Rouse, Warren B;
Tompkins, Van S;
O'Leary, Collin A;
Moss, Walter N

Publication type:

Article

EST analysis in Ginkgo biloba: an assessment of conserved developmental regulators and gymnosperm specific genes.

Published in:

BMC Genomics, 2005, v. 6, p. 1, doi. 10.1186/1471-2164-6-143

By:

Brenner, Eric D;
Katari, Manpreet S;
Stevenson, Dennis W;
Rudd, Stephen A;
Douglas, Andrew W;
Moss, Walter N;
Twigg, Richard W;
Runko, Suzan J;
Stellari, Giulia M;
McCombie, WR;
Coruzzi, Gloria M

Publication type:

Article