Works matching AU Moss, Walter N.
Results: 33
ScanFold 2.0: a rapid approach for identifying potential structured RNA targets in genomes and transcriptomes.
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- PeerJ, 2022, p. 1, doi. 10.7717/peerj.14361
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A survey of RNA secondary structural propensity encoded within human herpesvirus genomes: global comparisons and local motifs.
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- PeerJ, 2020, p. 1, doi. 10.7717/peerj.9882
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- Article
ScanFold: an approach for genome-wide discovery of local RNA structural elements—applications to Zika virus and HIV.
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- PeerJ, 2018, p. 1, doi. 10.7717/peerj.6136
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Identification of conserved RNA secondary structures at influenza B and C splice sites reveals similarities and differences between influenza A, B, and C.
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- BMC Research Notes, 2014, v. 7, n. 1, p. 1, doi. 10.1186/1756-0500-7-22
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- Article
Influenza B virus has global ordered RNA structure in (+) and (-) strands but relatively less stable predicted RNA folding free energy than allowed by the encoded protein sequence.
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- BMC Research Notes, 2013, v. 6, n. 1, p. 1, doi. 10.1186/1756-0500-6-330
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The RNA encoding the microtubule-associated protein tau has extensive structure that affects its biology.
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- PLoS ONE, 2019, v. 14, n. 7, p. 1, doi. 10.1371/journal.pone.0219210
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RNA structural analysis of the MYC mRNA reveals conserved motifs that affect gene expression.
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- PLoS ONE, 2019, v. 14, n. 6, p. 1, doi. 10.1371/journal.pone.0213758
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Secondary Structure of Subgenomic RNA M of SARS-CoV-2.
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- Viruses (1999-4915), 2022, v. 14, n. 2, p. 322, doi. 10.3390/v14020322
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Identification of MYC intron 2 regions that modulate expression.
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- PLoS ONE, 2024, v. 19, n. 1, p. 1, doi. 10.1371/journal.pone.0296889
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The influenza A segment 7 mRNA 3' splice site pseudoknot/hairpin family.
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- RNA Biology, 2012, v. 9, n. 11, p. 1, doi. 10.4161/rna.22343
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Genome-wide analyses of Epstein-Barr virus reveal conserved RNA structures and a novel stable intronic sequence RNA.
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- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-543
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Secondary structure model of the naked segment 7 influenza A virus genomic RNA.
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- Biochemical Journal, 2016, v. 473, n. 23, p. 4327, doi. 10.1042/BCJ20160651
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Self-Folding of Naked Segment 8 Genomic RNA of Influenza A Virus.
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- PLoS ONE, 2016, v. 11, n. 2, p. 1, doi. 10.1371/journal.pone.0148281
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A Conserved Secondary Structural Element in the Coding Region of the Influenza A Virus Nucleoprotein (NP) mRNA Is Important for the Regulation of Viral Proliferation.
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- PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0141132
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In silico analysis of local RNA secondary structure in influenza virus A, B and C finds evidence of widespread ordered stability but little evidence of significant covariation.
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- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-021-03767-x
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Conserved Structural Motifs of Two Distant IAV Subtypes in Genomic Segment 5 RNA.
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- Viruses (1999-4915), 2021, v. 13, n. 3, p. 525, doi. 10.3390/v13030525
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EST analysis in Ginkgo biloba: an assessment of conserved developmental regulators and gymnosperm specific genes.
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- BMC Genomics, 2005, v. 6, p. 1, doi. 10.1186/1471-2164-6-143
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RNA families in Epstein-Barr virus.
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- RNA Biology, 2014, v. 11, n. 1, p. 1, doi. 10.4161/rna.27488
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Secondary Structure of Influenza A Virus Genomic Segment 8 RNA Folded in a Cellular Environment.
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- International Journal of Molecular Sciences, 2022, v. 23, n. 5, p. 2452, doi. 10.3390/ijms23052452
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Intronic RNA secondary structural information captured for the human MYC pre-mRNA.
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- NAR Genomics & Bioinformatics, 2024, v. 6, n. 4, p. 1, doi. 10.1093/nargab/lqae143
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Thermodynamic and structural characterization of an EBV infected B-cell lymphoma transcriptome.
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- NAR Genomics & Bioinformatics, 2022, v. 4, n. 4, p. 1, doi. 10.1093/nargab/lqac082
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Prediction and analysis of functional RNA structures within the integrative genomics viewer.
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- NAR Genomics & Bioinformatics, 2022, v. 4, n. 1, p. 1, doi. 10.1093/nargab/lqab127
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Isoenergetic penta- and hexanucleotide microarray probing and chemical mapping provide a secondary structure model for an RNA element orchestrating R2 retrotransposon protein function.
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- Nucleic Acids Research, 2008, v. 36, n. 6, p. 1770, doi. 10.1093/nar/gkm1085
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In vivo secondary structural analysis of Influenza A virus genomic RNA.
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- Cellular & Molecular Life Sciences, 2023, v. 80, n. 5, p. 1, doi. 10.1007/s00018-023-04764-1
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The RNA secondary structure of androgen receptor-FL and V7 transcripts reveals novel regulatory regions.
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- Nucleic Acids Research, 2024, v. 52, n. 11, p. 6596, doi. 10.1093/nar/gkae220
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Analyses of human cancer driver genes uncovers evolutionarily conserved RNA structural elements involved in posttranscriptional control.
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- PLoS ONE, 2022, v. 18, n. 2, p. 1, doi. 10.1371/journal.pone.0264025
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Analysis of a structured intronic region of the LMP2 pre-mRNA from EBV reveals associations with human regulatory proteins and nuclear actin.
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- BMC Research Notes, 2019, v. 12, n. 1, p. N.PAG, doi. 10.1186/s13104-019-4070-1
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Probing Xist RNA Structure in Cells Using Targeted Structure-Seq.
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- PLoS Genetics, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pgen.1005668
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Expansion of the RNAStructuromeDB to include secondary structural data spanning the human protein-coding transcriptome.
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- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-18699-3
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Secondary Structure of a Conserved Domain in the Intron of Influenza A NS1 mRNA.
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- PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0070615
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The 3' Splice Site of Influenza A Segment 7 mRNA Can Exist in Two Conformations: A Pseudoknot and a Hairpin.
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- PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0038323
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Influenza A Virus Coding Regions Exhibit Host-Specific Global Ordered RNA Structure.
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- PLoS ONE, 2012, v. 7, n. 4, p. 1, doi. 10.1371/journal.pone.0035989
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The Epstein Barr virus circRNAome.
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- PLoS Pathogens, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.ppat.1007206
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- Article