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Genome-resolved metaproteomic characterization of preterm infant gut microbiota development reveals speciesspecific metabolic shifts and variabilities during early life.
- Published in:
- Microbiome, 2017, v. 5, p. 1, doi. 10.1186/s40168-017-0290-6
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- Article
Disruption of the microbiota across multiple body sites in critically ill children.
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- Microbiome, 2016, v. 4, p. 1, doi. 10.1186/s40168-016-0211-0
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- Article
Experimental validation that human microbiome phages use alternative genetic coding.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-32979-6
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- Article
Gut bacteria are rarely shared by co-hospitalized premature infants, regardless of necrotizing enterocolitis development.
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- eLife, 2015, p. 1, doi. 10.7554/eLife.05477
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- Article
The salivary microbiota of patients with acute lower respiratory tract infection–A multicenter cohort study.
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- PLoS ONE, 2024, v. 19, n. 1, p. 1, doi. 10.1371/journal.pone.0290062
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- Article
Contamination source modeling with SCRuB improves cancer phenotype prediction from microbiome data.
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- Nature Biotechnology, 2023, v. 41, n. 12, p. 1820, doi. 10.1038/s41587-023-01696-w
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- Article
inStrain profiles population microdiversity from metagenomic data and sensitively detects shared microbial strains.
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- Nature Biotechnology, 2021, v. 39, n. 6, p. 727, doi. 10.1038/s41587-020-00797-0
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- Article
Pinhole imaging of 131I-metaiodobenzylguanidine (131I-MIBG) in an animal model of neuroblastoma.
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- 2003
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- journal article
Mucosa-Associated Bacterial Diversity in Necrotizing Enterocolitis.
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- PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0105046
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- Article
Gut Microbial Gene Expression in Mother-Fed and Formula-Fed Piglets.
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- PLoS ONE, 2010, v. 5, n. 8, p. 1, doi. 10.1371/journal.pone.0012459
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- Article
Metaproteomics reveals functional shifts in microbial and human proteins during a preterm infant gut colonization case.
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- Proteomics, 2015, v. 15, n. 20, p. 3463, doi. 10.1002/pmic.201400563
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- Article
Genetic association and differential expression of PITX2 with acute appendicitis.
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- Human Genetics, 2019, v. 138, n. 1, p. 37, doi. 10.1007/s00439-018-1956-2
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- Article
Antibiotic resistance and host immune system-induced metal bactericidal control are key factors for microbial persistence in the developing human preterm infant gut microbiome.
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- Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.958638
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- Article
Pilot Study of the Effect of Plant-Based Enteral Nutrition on the Gut Microbiota in Chronically Ill Tube-Fed Children.
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- 2019
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- Publication type:
- journal article
Epithelial NAD<sup>+</sup> depletion drives mitochondrial dysfunction and contributes to intestinal inflammation.
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- Frontiers in Immunology, 2023, p. 01, doi. 10.3389/fimmu.2023.1231700
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- Article
Combined analysis of microbial metagenomic and metatranscriptomic sequencing data to assess in situ physiological conditions in the premature infant gut.
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- PLoS ONE, 2020, v. 15, n. 3, p. 1, doi. 10.1371/journal.pone.0229537
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- Article
Effect of dietary cellulose supplementation on gut barrier function and apoptosis in a murine model of endotoxemia.
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- PLoS ONE, 2019, v. 14, n. 12, p. 1, doi. 10.1371/journal.pone.0224838
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- Article
The Role of Human Milk in Decreasing Necrotizing Enterocolitis Through Modulation of the Infant Gut Microbiome: A Scoping Review.
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- Journal of Human Lactation, 2020, v. 36, n. 4, p. 647, doi. 10.1177/0890334420950260
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- Article
The NICU Antibiotics and Outcomes (NANO) trial: a randomized multicenter clinical trial assessing empiric antibiotics and clinical outcomes in newborn preterm infants.
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- 2022
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- Publication type:
- journal article
Cyclic GMP-AMP synthase contributes to epithelial homeostasis in intestinal inflammation via Beclin-1-mediated autophagy.
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- FASEB Journal, 2022, v. 36, n. 5, p. 1, doi. 10.1096/fj.202200138R
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- Article
Using strain-resolved analysis to identify contamination in metagenomics data.
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- Microbiome, 2023, v. 11, n. 1, p. 1, doi. 10.1186/s40168-023-01477-2
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- Publication type:
- Article
Time-Dependent Displacement of Commensal Skin Microbes by Pathogens at the Site of Colorectal Surgery.
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- Clinical Infectious Diseases, 2021, v. 73, n. 9, p. e2754, doi. 10.1093/cid/ciaa1615
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- Article
Acute Appendicitis in Children Is Associated With a Local Expansion of Fusobacteria.
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- Clinical Infectious Diseases, 2016, v. 63, n. 1, p. 71, doi. 10.1093/cid/ciw208
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- Article
Concentrations and Sources of Airborne Particles in a Neonatal Intensive Care Unit.
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- PLoS ONE, 2016, v. 11, n. 5, p. 1, doi. 10.1371/journal.pone.0154991
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- Article
From tofu to T-bones: how vegan and ketogenic diets shape our immune defenses.
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- 2024
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- Abstract
Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms.
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- Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0638-1
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- Publication type:
- Article
The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms.
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- Microbiome, 2018, v. 6, n. 1, p. N.PAG, doi. 10.1186/s40168-018-0493-5
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- Publication type:
- Article
Crosstalk between DNA Damage Repair and Metabolic Regulation in Hematopoietic Stem Cells.
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- Cells (2073-4409), 2024, v. 13, n. 9, p. 733, doi. 10.3390/cells13090733
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- Article
Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome.
- Published in:
- Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-02018-w
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- Publication type:
- Article
Strain-resolved microbial community proteomics reveals simultaneous aerobic and anaerobic function during gastrointestinal tract colonization of a preterm infant.
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- Frontiers in Microbiology, 2015, p. 1, doi. 10.3389/fmicb.2015.00654
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- Article
Proceedings of the 2013 A.S.P.E.N. Research workshop: the interface between nutrition and the gut microbiome: implications and applications for human health [corrected].
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- 2014
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- Publication type:
- journal article
Proceedings of the 2014 A.S.P.E.N. Research Workshop: The Interface Between Nutrition and the Gut Microbiome: Implications and Applications for Human Health.
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- JPEN Journal of Parenteral & Enteral Nutrition, 2014, v. 38, n. 2, p. 167, doi. 10.1177/0148607113517904
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- Article
Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitalized infants revealed by in situ genomics, transcriptomics, and proteomics.
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- Microbiome, 2021, v. 9, n. 1, p. 1, doi. 10.1186/s40168-021-01085-y
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- Publication type:
- Article