Works by Morota, Gota

Results: 80

Quantifying genomic connectedness and prediction accuracy from additive and non-additive gene actions.

Published in:

Genetics Selection Evolution, 2018, v. 50, n. 1, p. N.PAG, doi. 10.1186/s12711-018-0415-9

By:

Momen, Mehdi;
Morota, Gota

Publication type:

Article

ShinyGPAS: interactive genomic prediction accuracy simulator based on deterministic formulas.

Published in:

Genetics Selection Evolution, 2017, v. 49, p. 1, doi. 10.1186/s12711-017-0368-4

By:

Morota, Gota

Publication type:

Article

Differential contribution of genomic regions to marked genetic variation and prediction of quantitative traits in broiler chickens.

Published in:

Genetics Selection Evolution, 2016, v. 48, p. 1, doi. 10.1186/s12711-016-0187-z

By:

Abdollahi-Arpanahi, Rostam;
Morota, Gota;
Valente, Bruno D.;
Kranis, Andreas;
Rosa, Guilherme J. M.;
Gianola, Daniel

Publication type:

Article

Predicting complex traits using a diffusion kernel on genetic markers with an application to dairy cattle and wheat data.

Published in:

Genetics Selection Evolution, 2013, v. 45, n. 6, p. 1, doi. 10.1186/1297-9686-45-17

By:

Morota, Gota;
Koyama, Masanori;
Rosa, Guilherme J. M.;
Weigel, Kent A.;
Gianola, Daniel

Publication type:

Article

Comparative analysis of semantic segmentation and deep regression models with supervised pretraining for accurate prediction of pig body weight from video data: Insights from industry-scale datasets.

Published in:

Journal of Animal Science, 2024, v. 102, p. 414, doi. 10.1093/jas/skae234.472

By:

Ye Bi;
Jianhua Xuan;
Yijian Huang;
Gota Morota

Publication type:

Article

The impact of trait measurement error on quantitative genetic analysis.

Published in:

Journal of Animal Science, 2024, v. 102, p. 25, doi. 10.1093/jas/skae234.028

By:

Ye Bi;
Yijian Huang;
Morota, Gota

Publication type:

Article

Technical note: ShinyAnimalCV: open-source cloud-based web application for object detection, segmentation, and three-dimensional visualization of animals using computer vision.

Published in:

Journal of Animal Science, 2024, v. 102, p. 1, doi. 10.1093/jas/skad416

By:

Wang, Jin;
Hu, Yu;
Xiang, Lirong;
Morota, Gota;
Brooks, Samantha A;
Wickens, Carissa L;
Miller-Cushon, Emily K;
Yu, Haipeng

Publication type:

Article

Shinyanimalcv: Interactive Web Application for Object Detection and Three-Dimensional Visualization of Animals Using Computer Vision.

Published in:

Journal of Animal Science, 2023, v. 101, p. 244, doi. 10.1093/jas/skad281.294

By:

Jin Wang;
Lirong Xiang;
Morota, Gota;
Wickens, Carissa;
Cushon, Emily;
Brooks, Samantha;
Haipeng Yu

Publication type:

Article

Depth Video Data-Enabled Predictions of Longitudinal Dairy Cow Body Weight Using Thresholding and Mask R-Cnn Algorithms.

Published in:

Journal of Animal Science, 2023, v. 101, p. 44, doi. 10.1093/jas/skad281.054

By:

Ye Bi;
Campos, Leticia;
Jin Wang;
Haipeng Yu;
Hanigan, Mark;
Gota Morota

Publication type:

Article

Improved pig behavior analysis by optimizing window sizes for individual behaviors on acceleration and angular velocity data.

Published in:

Journal of Animal Science, 2022, v. 100, n. 11, p. 1, doi. 10.1093/jas/skac293

By:

Alghamdi, Saleh;
Zhuqing Zhao;
Ha, Dong S.;
Morota, Gota;
Ha, Sook S.

Publication type:

Article

Development of Automated Computer Vision Systems for Evaluating Dairy cow Body Weight and Body Condition Scores.

Published in:

Journal of Animal Science, 2022, v. 100, p. 249, doi. 10.1093/jas/skac247.451

By:

Ye Bi;
Kadlec, Robert;
Castro, Kayla;
Indest, Sam;
Amorim, Sabrina;
Morota, Gota

Publication type:

Article

How can Artificial Intelligence Accelerate Phenotyping Efforts in Animal Breeding?

Published in:

Journal of Animal Science, 2022, v. 100, p. 11, doi. 10.1093/jas/skac247.020

By:

Morota, Gota;
Dong Ha;
Chen, James

Publication type:

Article

VTag: a semi-supervised pipeline for tracking pig activity with a single top-view camera.

Published in:

Journal of Animal Science, 2022, v. 100, n. 6, p. 1, doi. 10.1093/jas/skac147

By:

Chen, Chun-Peng J;
Morota, Gota;
Lee, Kiho;
Zhang, Zhiwu;
Cheng, Hao

Publication type:

Article

Statistical Graphics and Interactive Visualization in Animal Science.

Published in:

Journal of Animal Science, 2021, v. 99, p. 45, doi. 10.1093/jas/skab235.079

By:

Morota, Gota

Publication type:

Article

An assessment of genomic connectedness measures in Nellore cattle.

Published in:

Journal of Animal Science, 2020, v. 98, n. 11, p. 1, doi. 10.1093/jas/skaa289

By:

Amorim, Sabrina T.;
Haipeng Yu;
Momen, Mehdi;
Galvão de Albuquerque, Lúcia;
Cravo Pereira, Angélica S.;
Baldi, Fernando;
Morota, Gota

Publication type:

Article

30 Mutli-omic data integration in quantitative genetics.

Published in:

Journal of Animal Science, 2019, v. 97, p. 15, doi. 10.1093/jas/skz122.027

By:

Morota, Gota

Publication type:

Article

Do stronger measures of genomic connectedness enhance prediction accuracies across management units?

Published in:

Journal of Animal Science, 2018, v. 96, n. 11, p. 4490, doi. 10.1093/jas/sky316

By:

Yu, Haipeng;
Spangler, Matthew L;
Lewis, Ronald M;
Morota, Gota

Publication type:

Article

BIG DATA ANALYTICS AND PRECISION ANIMAL AGRICULTURE SYMPOSIUM: Machine learning and data mining advance predictive big data analysis in precision animal agriculture.

Published in:

Journal of Animal Science, 2018, v. 96, n. 4, p. 1540, doi. 10.1093/jas/sky014

By:

Morota, Gota;
Ventura, Ricardo V;
Silva, Fabyano F;
Koyama, Masanori;
Fernando, Samodha C

Publication type:

Article

Improved MeSH analysis software tools for farm animals.

Published in:

Animal Genetics, 2022, v. 53, n. 1, p. 171, doi. 10.1111/age.13159

By:

Amorim, Sabrina T.;
Tsuyuzaki, Koki;
Nikaido, Itoshi;
Morota, Gota

Publication type:

Article

Deciphering Cattle Temperament Measures Derived From a Four-Platform Standing Scale Using Genetic Factor Analytic Modeling.

Published in:

Frontiers in Genetics, 2020, v. 11, p. 1, doi. 10.3389/fgene.2020.00599

By:

Yu, Haipeng;
Morota, Gota;
Celestino, Elfren F.;
Dahlen, Carl R.;
Wagner, Sarah A.;
Riley, David G.;
Hulsman Hanna, Lauren L.

Publication type:

Article

Allelic variation in rice Fertilization Independent Endosperm 1 contributes to grain width under high night temperature stress.

Published in:

New Phytologist, 2021, v. 229, n. 1, p. 335, doi. 10.1111/nph.16897

By:

Dhatt, Balpreet K.;
Paul, Puneet;
Sandhu, Jaspreet;
Hussain, Waseem;
Irvin, Larissa;
Zhu, Feiyu;
Adviento‐Borbe, Maria Arlene;
Lorence, Argelia;
Staswick, Paul;
Yu, Hongfeng;
Morota, Gota;
Walia, Harkamal

Publication type:

Article

SeedExtractor : An Open-Source GUI for Seed Image Analysis.

Published in:

Frontiers in Plant Science, 2021, v. 11, p. N.PAG, doi. 10.3389/fpls.2020.581546

By:

Zhu, Feiyu;
Paul, Puneet;
Hussain, Waseem;
Wallman, Kyle;
Dhatt, Balpreet K.;
Sandhu, Jaspreet;
Irvin, Larissa;
Morota, Gota;
Yu, Hongfeng;
Walia, Harkamal

Publication type:

Article

Analysis of human mini-exome sequencing data from Genetic Analysis Workshop 17 using a Bayesian hierarchical mixture model.

Published in:

BMC Proceedings, 2011, v. 5, n. Suppl 9, p. 1, doi. 10.1186/1753-6561-5-S9-S93

By:

Filho, Julio S. Bueno;
Morota, Gota;
Tran, Quoc;
Maenner, Matthew J.;
Vera-Cala, Lina M.;
Engelman, Corinne D.;
Meyers, Kristin J.

Publication type:

Article

Multi-trait random regression models increase genomic prediction accuracy for a temporal physiological trait derived from high-throughput phenotyping.

Published in:

PLoS ONE, 2020, v. 15, n. 2, p. 1, doi. 10.1371/journal.pone.0228118

By:

Baba, Toshimi;
Momen, Mehdi;
Campbell, Malachy T.;
Walia, Harkamal;
Morota, Gota

Publication type:

Article

Genomic prediction of metabolic content in rice grain in response to warmer night conditions.

Published in:

Crop Science, 2025, v. 65, n. 1, p. 1, doi. 10.1002/csc2.21435

By:

Bi, Ye;
Walia, Harkamal;
Obata, Toshihiro;
Morota, Gota

Publication type:

Article

Evaluating metabolic and genomic data for predicting grain traits under high night temperature stress in rice.

Published in:

G3: Genes | Genomes | Genetics, 2023, v. 13, n. 5, p. 1, doi. 10.1093/g3journal/jkad052

By:

Ye Bi;
Yassue, Rafael Massahiro;
Paul, Puneet;
Dhatt, Balpreet Kaur;
Sandhu, Jaspreet;
Do, Phuc Thi;
Walia, Harkamal;
Obata, Toshihiro;
Morota, Gota

Publication type:

Article

A Multiple-Trait Bayesian Variable Selection Regression Method for Integrating Phenotypic Causal Networks in Genome-Wide Association Studies.

Published in:

G3: Genes | Genomes | Genetics, 2020, v. 10, n. 12, p. 4439, doi. 10.1534/g3.120.401618

By:

Zigui Wang;
Chapman, Deborah;
Morota, Gota;
Hao Cheng

Publication type:

Article

Predicting Longitudinal Traits Derived from High-Throughput Phenomics in Contrasting Environments Using Genomic Legendre Polynomials and B-Splines.

Published in:

G3: Genes | Genomes | Genetics, 2019, v. 9, n. 10, p. 3369, doi. 10.1534/g3.119.400346

By:

Momen, Mehdi;
Campbell, Malachy T.;
Walia, Harkamal;
Morota, Gota

Publication type:

Article

Genomic Bayesian Confirmatory Factor Analysis and Bayesian Network To Characterize a Wide Spectrum of Rice Phenotypes.

Published in:

G3: Genes | Genomes | Genetics, 2019, v. 9, n. 6, p. 1975, doi. 10.1534/g3.119.400154

By:

Haipeng Yu;
Campbell, Malachy T.;
Qi Zhang;
Walia, Harkamal;
Morota, Gota

Publication type:

Article

Genomic Relatedness Strengthens Genetic Connectedness Across Management Units.

Published in:

G3: Genes | Genomes | Genetics, 2017, v. 7, n. 10, p. 3543, doi. 10.1534/g3.117.300151

By:

Haipeng Yu;
Spangler, Matthew L.;
Lewis, Ronald M.;
Morota, Gota

Publication type:

Article

MeSH-Informed Enrichment Analysis and MeSH-Guided Semantic Similarity Among Functional Terms and Gene Products in Chicken.

Published in:

G3: Genes | Genomes | Genetics, 2016, v. 6, n. 8, p. 2447, doi. 10.1534/g3.116.031096

By:

Gota Morota;
Beissinger, Timothy M.;
Peñagaricano, Francisco

Publication type:

Article

Leveraging genome-enabled growth models to study shoot growth responses to water deficit in rice.

Published in:

Journal of Experimental Botany, 2020, v. 71, n. 18, p. 5669, doi. 10.1093/jxb/eraa280

By:

Campbell, Malachy T;
Grondin, Alexandre;
Walia, Harkamal;
Morota, Gota

Publication type:

Article

Retrospective Single Nucleotide Polymorphism Analysis of Host Resistance and Susceptibility to Ovine Johne's Disease Using Restored FFPE DNA.

Published in:

International Journal of Molecular Sciences, 2024, v. 25, n. 14, p. 7748, doi. 10.3390/ijms25147748

By:

Kravitz, Amanda;
Liao, Mingsi;
Morota, Gota;
Tyler, Ron;
Cockrum, Rebecca;
Manohar, B. Murali;
Ronald, B. Samuel Masilamoni;
Collins, Michael T.;
Sriranganathan, Nammalwar

Publication type:

Article

Genome-wide association analysis uncovers the genetic architecture of tradeoff between flowering date and yield components in sesame.

Published in:

BMC Plant Biology, 2021, v. 21, n. 1, p. 1, doi. 10.1186/s12870-021-03328-4

By:

Sabag, Idan;
Morota, Gota;
Peleg, Zvi

Publication type:

Article

A low‐cost greenhouse‐based high‐throughput phenotyping platform for genetic studies: A case study in maize under inoculation with plant growth‐promoting bacteria.

Published in:

Plant Phenome Journal, 2022, v. 5, n. 1, p. 1, doi. 10.1002/ppj2.20043

By:

Yassue, Rafael Massahiro;
Galli, Giovanni;
Borsato, Ronaldo;
Cheng, Hao;
Morota, Gota;
Fritsche‐Neto, Roberto

Publication type:

Article

Peeling back the many layers of competitive exclusion.

Published in:

Frontiers in Microbiology, 2024, p. 01, doi. 10.3389/fmicb.2024.1342887

By:

Maurer, John J.;
Ying Cheng;
Pedroso, Adriana;
Thompson, Kasey K.;
Akter, Shamima;
Kwan, Tiffany;
Morota, Gota;
Kinstler, Sydney;
Porwollik, Steffen;
McClelland, Michael;
Escalante-Semerena, Jorge C.;
Lee, Margie D.

Publication type:

Article

Single Nucleotide Polymorphism Effects on Lamb Fecal Egg Count Estimated Breeding Values in Progeny-Tested Katahdin Sires.

Published in:

Frontiers in Genetics, 2022, v. 13, p. 1, doi. 10.3389/fgene.2022.866176

By:

Notter, David R.;
Heidaritabar, Marzieh;
Burke, Joan M.;
Shirali, Masoud;
Murdoch, Brenda M.;
Morgan, James L. M.;
Morota, Gota;
Sonstegard, Tad S.;
Becker, Gabrielle M.;
Spangler, Gordon L.;
MacNeil, Michael D.;
Miller, James E.

Publication type:

Article

Editorial: High-Throughput Phenotyping in the Genomic Improvement of Livestock.

Published in:

2021

By:

Silva, Fabyano Fonseca;
Morota, Gota;
Rosa, Guilherme Jordão de Magalhães

Publication type:

Editorial

Genome‐wide association analysis of hyperspectral reflectance data to dissect the genetic architecture of growth‐related traits in maize under plant growth‐promoting bacteria inoculation.

Published in:

Plant Direct, 2023, v. 7, n. 4, p. 1, doi. 10.1002/pld3.492

By:

Massahiro Yassue, Rafael;
Galli, Giovanni;
James Chen, Chun‐Peng;
Fritsche‐Neto, Roberto;
Morota, Gota

Publication type:

Article

Modeling multiple phenotypes in wheat using data‐driven genomic exploratory factor analysis and Bayesian network learning.

Published in:

Plant Direct, 2021, v. 5, n. 1, p. 1, doi. 10.1002/pld3.304

By:

Momen, Mehdi;
Bhatta, Madhav;
Hussain, Waseem;
Yu, Haipeng;
Morota, Gota

Publication type:

Article

Divergent phenotypic response of rice accessions to transient heat stress during early seed development.

Published in:

Plant Direct, 2020, v. 4, n. 1, p. N.PAG, doi. 10.1002/pld3.196

By:

Paul, Puneet;
Dhatt, Balpreet K.;
Sandhu, Jaspreet;
Hussain, Waseem;
Irvin, Larissa;
Morota, Gota;
Staswick, Paul;
Walia, Harkamal

Publication type:

Article

ShinyAIM: Shiny‐based application of interactive Manhattan plots for longitudinal genome‐wide association studies.

Published in:

Plant Direct, 2018, v. 2, n. 10, p. N.PAG, doi. 10.1002/pld3.91

By:

Hussain, Waseem;
Campbell, Malachy;
Walia, Harkamal;
Morota, Gota

Publication type:

Article

Utilizing random regression models for genomic prediction of a longitudinal trait derived from high‐throughput phenotyping.

Published in:

Plant Direct, 2018, v. 2, n. 9, p. 1, doi. 10.1002/pld3.80

By:

Campbell, Malachy;
Walia, Harkamal;
Morota, Gota

Publication type:

Article

Multi-environment analysis enhances genomic prediction accuracy of agronomic traits in sesame.

Published in:

Frontiers in Genetics, 2023, v. 14, p. 1, doi. 10.3389/fgene.2023.1108416

By:

Sabag, Idan;
Ye Bi;
Peleg, Zvi;
Morota, Gota

Publication type:

Article

Genes and models for estimating genetic parameters for heat tolerance in dairy cattle.

Published in:

Frontiers in Genetics, 2023, v. 14, p. 1, doi. 10.3389/fgene.2023.1127175

By:

Habimana, Vincent;
Ekine-Dzivenu, Chinyere Charlotte;
Nguluma, Athumani Shabani;
Nziku, Zabron Cuthibert;
Morota, Gota;
Chenyambuga, Sebastian Wilson;
Mrode, Raphael

Publication type:

Article

Multi-omic data integration for the study of production, carcass, and meat quality traits in Nellore cattle .

Published in:

Frontiers in Genetics, 2022, v. 13, p. 1, doi. 10.3389/fgene.2022.948240

By:

José de Novais, Francisco;
Yu Haipeng;
Mello Cesar, Aline Silva;
Momen, Mehdi;
Daiana Poleti, Mirele;
Petry, Bruna;
Barreto Mourão, Gerson;
de Almeida Regitano, Luciana Correia;
Morota, Gota;
Lehmann Coutinho, Luiz

Publication type:

Article

Leveraging genomics and temporal high‐throughput phenotyping to enhance association mapping and yield prediction in sesame.

Published in:

Plant Genome, 2024, v. 17, n. 3, p. 1, doi. 10.1002/tpg2.20481

By:

Sabag, Idan;
Bi, Ye;
Sahoo, Maitreya Mohan;
Herrmann, Ittai;
Morota, Gota;
Peleg, Zvi

Publication type:

Article

A Bayesian random regression method using mixture priors for genome‐enabled analysis of time‐series high‐throughput phenotyping data.

Published in:

Plant Genome, 2022, v. 15, n. 3, p. 1, doi. 10.1002/tpg2.20228

By:

Qu, Jiayi;
Morota, Gota;
Cheng, Hao

Publication type:

Article

Variance heterogeneity genome‐wide mapping for cadmium in bread wheat reveals novel genomic loci and epistatic interactions.

Published in:

Plant Genome, 2020, v. 13, n. 1, p. 1, doi. 10.1002/tpg2.20011

By:

Hussain, Waseem;
Campbell, Malachy T.;
Jarquin, Diego;
Walia, Harkamal;
Morota, Gota

Publication type:

Article

Effect of genomic inbreeding coefficients in productive traits in Santa Ines sheep.

Published in:

Latin American Archives of Animal Production / Archivos Latinoamericanos de Producción Animal / Arquivos Latino-Americanos de Produção Animal, 2018, v. 26, n. 5, p. 65

By:

Mamani, Gerardo Cornelio Mamani;
Folegatti Santana, Bruna;
da Conceição Abreu Silva, Bárbara;
Chicaroni Mattos, Elisângela;
Pereira Eler, Joanir;
Morota, Gota;
Ferraz, José Bento Sterman

Publication type:

Article