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YeeD is an essential partner for YeeE-mediated thiosulfate uptake in bacteria and regulates thiosulfate ion decomposition.
- Published in:
- PLoS Biology, 2024, v. 22, n. 4, p. 1, doi. 10.1371/journal.pbio.3002601
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- Article
SPANA: Spatial decomposition analysis for cellular‐scale molecular dynamics simulations.
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- Journal of Computational Chemistry, 2024, v. 45, n. 8, p. 498, doi. 10.1002/jcc.27260
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- Article
The inherent flexibility of receptor binding domains in SARS- CoV-2 spike protein.
- Published in:
- eLife, 2022, p. 1, doi. 10.7554/eLife.75720
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- Article
Molecular mechanisms for dynamic regulation of N1 riboswitch by aminoglycosides.
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- Nucleic Acids Research, 2018, v. 46, n. 19, p. 9960, doi. 10.1093/nar/gky833
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- Article
GENESIS 1.1: A Hybrid-Parallel Molecular Dynamics Simulator with Enhanced Sampling Algorithms on Multiple Computational Platforms.
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- Journal of Computational Chemistry, 2017, v. 38, n. 25, p. 2193, doi. 10.1002/jcc.24874
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- Article
Flexible fitting to cryo-EM density map using ensemble molecular dynamics simulations.
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- Journal of Computational Chemistry, 2017, v. 38, n. 16, p. 1447, doi. 10.1002/jcc.24785
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- Article
Biomolecular interactions modulate macromolecular structure and dynamics in atomistic model of a bacterial cytoplasm.
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- eLife, 2016, p. 1, doi. 10.7554/eLife.19274
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- Article
GENESIS: a hybrid-parallel and multi-scale molecular dynamics simulator with enhanced sampling algorithms for biomolecular and cellular simulations.
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- WIREs: Computational Molecular Science, 2015, v. 5, n. 4, p. 310, doi. 10.1002/wcms.1220
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- Article
Midpoint cell method for hybrid (MPI+OpenMP) parallelization of molecular dynamics simulations.
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- Journal of Computational Chemistry, 2014, v. 35, n. 14, p. 1064, doi. 10.1002/jcc.23591
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- Article
Structural basis of Sec-independent membrane protein insertion by YidC.
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- Nature, 2014, v. 509, n. 7501, p. 516, doi. 10.1038/nature13167
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- Article
Efficient Lookup Table Using a Linear Function of Inverse Distance Squared.
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- Journal of Computational Chemistry, 2013, v. 34, n. 28, p. 2412, doi. 10.1002/jcc.23404
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- Article
Analysis of lipid surface area in protein-membrane systems combining voronoi tessellation and monte carlo integration methods.
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- Journal of Computational Chemistry, 2012, v. 33, n. 3, p. 286, doi. 10.1002/jcc.21973
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- Article
Integrated prediction of one-dimensional structural features and their relationships with conformational flexibility in helical membraneproteins.
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- BMC Bioinformatics, 2010, v. 11, p. 533, doi. 10.1186/1471-2105-11-533
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- Article
Conformational transition of Sec machinery inferred from bacterial SecYE structures.
- Published in:
- Nature, 2008, v. 455, n. 7215, p. 988, doi. 10.1038/nature07421
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- Article