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Biologically meaningful genome interpretation models to address data underdetermination for the leaf and seed ionome prediction in Arabidopsis thaliana.
- Published in:
- Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-63855-6
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- Publication type:
- Article
Genome interpretation in a federated learning context allows the multi-center exome-based risk prediction of Crohn's disease patients.
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- Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-46887-2
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- Publication type:
- Article
Large sample size and nonlinear sparse models outline epistatic effects in inflammatory bowel disease.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-03064-y
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- Publication type:
- Article
Nonlinear data fusion over Entity–Relation graphs for Drug–Target Interaction prediction.
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- Bioinformatics, 2023, v. 39, n. 6, p. 1, doi. 10.1093/bioinformatics/btad348
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- Publication type:
- Article
Natural Lipid Extracts as an Artificial Membrane for Drug Permeability Assay: In Vitro and In Silico Characterization.
- Published in:
- Pharmaceutics, 2023, v. 15, n. 3, p. 899, doi. 10.3390/pharmaceutics15030899
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- Publication type:
- Article
Fast and accurate inference of gene regulatory networks through robust precision matrix estimation.
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- Bioinformatics, 2022, v. 38, n. 10, p. 2802, doi. 10.1093/bioinformatics/btac178
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- Publication type:
- Article
From genotype to phenotype in Arabidopsis thaliana: in-silico genome interpretation predicts 288 phenotypes from sequencing data.
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- Nucleic Acids Research, 2022, v. 50, n. 3, p. e16, doi. 10.1093/nar/gkab1099
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- Publication type:
- Article
PyUUL provides an interface between biological structures and deep learning algorithms.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28327-3
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- Publication type:
- Article
Splitting chemical structure data sets for federated privacy-preserving machine learning.
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- Journal of Cheminformatics, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13321-021-00576-2
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- Publication type:
- Article
In silico prediction of in vitro protein liquid–liquid phase separation experiments outcomes with multi-head neural attention.
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- Bioinformatics, 2021, v. 37, n. 20, p. 3473, doi. 10.1093/bioinformatics/btab350
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- Publication type:
- Article
A novel method for data fusion over entity-relation graphs and its application to protein–protein interaction prediction.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2275, doi. 10.1093/bioinformatics/btab092
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- Publication type:
- Article
Two‐level preconditioning for Ridge Regression.
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- Numerical Linear Algebra with Applications, 2021, v. 28, n. 4, p. 1, doi. 10.1002/nla.2371
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- Publication type:
- Article
Current cancer driver variant predictors learn to recognize driver genes instead of functional variants.
- Published in:
- BMC Biology, 2021, v. 19, n. 1, p. 1, doi. 10.1186/s12915-020-00930-0
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- Publication type:
- Article
COVID-19 in people with multiple sclerosis: A global data sharing initiative.
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- Multiple Sclerosis Journal, 2020, v. 26, n. 10, p. 1157, doi. 10.1177/1352458520941485
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- Publication type:
- Article
Structure-based drug repositioning explains ibrutinib as VEGFR2 inhibitor.
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- PLoS ONE, 2020, v. 15, n. 5, p. 1, doi. 10.1371/journal.pone.0233089
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- Publication type:
- Article
Insight into the protein solubility driving forces with neural attention.
- Published in:
- PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007722
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- Publication type:
- Article
Computational identification of prion-like RNA-binding proteins that form liquid phase-separated condensates.
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- Bioinformatics, 2019, v. 35, n. 22, p. 4617, doi. 10.1093/bioinformatics/btz274
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- Publication type:
- Article
Exploring the limitations of biophysical propensity scales coupled with machine learning for protein sequence analysis.
- Published in:
- Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-53324-w
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- Publication type:
- Article
GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks.
- Published in:
- Bioinformatics, 2019, v. 35, n. 12, p. 2159, doi. 10.1093/bioinformatics/bty916
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- Publication type:
- Article
Author Correction: Linking drug target and pathway activation for effective therapy using multi-task learning.
- Published in:
- 2019
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- Publication type:
- Correction Notice
Author Correction: Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-08512-7
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- Publication type:
- Article
Towards practical privacy-preserving genome-wide association study.
- Published in:
- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2541-3
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- Publication type:
- Article
Author Correction: Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07842-2
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- Publication type:
- Article
Large-scale in-silico statistical mutagenesis analysis sheds light on the deleteriousness landscape of the human proteome.
- Published in:
- Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-34959-7
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- Publication type:
- Article
ACE-inhibition induces a cardioprotective transcriptional response in the metabolic syndrome heart.
- Published in:
- Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-34547-9
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- Publication type:
- Article
Ultra-fast global homology detection with Discrete Cosine Transform and Dynamic Time Warping.
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- Bioinformatics, 2018, v. 34, n. 18, p. 3118, doi. 10.1093/bioinformatics/bty309
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- Publication type:
- Article
ECCB 2018: The 17th European Conference on Computational Biology.
- Published in:
- 2018
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- Publication type:
- Proceeding
From hype to reality: data science enabling personalized medicine.
- Published in:
- 2018
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- Publication type:
- journal article
pBRIT: gene prioritization by correlating functional and phenotypic annotations through integrative data fusion.
- Published in:
- Bioinformatics, 2018, v. 34, n. 13, p. 2254, doi. 10.1093/bioinformatics/bty079
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- Publication type:
- Article
Gene prioritization using Bayesian matrix factorization with genomic and phenotypic side information.
- Published in:
- Bioinformatics, 2018, v. 34, n. 13, p. i447, doi. 10.1093/bioinformatics/bty289
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- Publication type:
- Article
Linking drug target and pathway activation for effective therapy using multi-task learning.
- Published in:
- Scientific Reports, 2018, v. 8, n. 1, p. N.PAG, doi. 10.1038/s41598-018-25947-y
- By:
- Publication type:
- Article
Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors.
- Published in:
- Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-01355-0
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- Publication type:
- Article
Understanding mutational effects in digenic diseases.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. 15, p. 1, doi. 10.1093/nar/gkx557
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- Publication type:
- Article
LA PENSÉE ADMINISTRATIVE DE TOCQUEVILLE A L'ÉPREUVE DE L'ACADÉMIE DES SCIENCES MORALES ET POLITIQUES.
- Published in:
- Tocqueville Review -- La Revue Tocqueville, 2017, v. 38, n. 1, p. 135, doi. 10.3138/ttr.38.1.135
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- Publication type:
- Article
Methylome analysis for spina bifida shows SOX18 hypomethylation as a risk factor with evidence for a complex (epi)genetic interplay to affect neural tube development.
- Published in:
- Clinical Epigenetics, 2016, v. 8, p. 1, doi. 10.1186/s13148-016-0272-8
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- Publication type:
- Article
Candidate gene prioritization with Endeavour.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. W1, p. W117, doi. 10.1093/nar/gkw365
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- Publication type:
- Article
Beegle: from literature mining to disease-gene discovery.
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- Nucleic Acids Research, 2016, v. 44, n. 2, p. 1, doi. 10.1093/nar/gkv905
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- Publication type:
- Article
Galahad: a web server for drug effect analysis from gene expression.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. W1, p. W208, doi. 10.1093/nar/gkv436
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- Publication type:
- Article
Problems with the nested granularity of feature domains in bioinformatics: the eXtasy case.
- Published in:
- BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S4-S2
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- Publication type:
- Article
NGS-Logistics: Federated analysis of NGS sequence variants across multiple locations.
- Published in:
- Genome Medicine, 2014, v. 6, n. 9, p. 1, doi. 10.1186/s13073-014-0071-9
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- Publication type:
- Article
Effective diagnosis of genetic disease by computational phenotype analysis of the disease-associated genome.
- Published in:
- Science Translational Medicine, 2014, v. 6, n. 252, p. 1, doi. 10.1126/scitranslmed.3009262
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- Publication type:
- Article
ECCB 2014: The 13th European Conference on Computational Biology.
- Published in:
- 2014
- By:
- Publication type:
- Proceeding
Protein fold recognition using geometric kernel data fusion.
- Published in:
- Bioinformatics, 2014, v. 30, n. 13, p. 1850, doi. 10.1093/bioinformatics/btu118
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- Publication type:
- Article
In vitro screening of embryos by whole-genome sequencing: now, in the future or never?
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- Human Reproduction, 2014, v. 29, n. 4, p. 842, doi. 10.1093/humrep/deu005
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- Publication type:
- Article
The genetic heterogeneity and mutational burden of engineered melanomas in zebrafish models.
- Published in:
- Genome Biology, 2013, v. 14, n. 10, p. 3, doi. 10.1186/gb-2013-14-10-r113
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- Publication type:
- Article
eXtasy: variant prioritization by genomic data fusion.
- Published in:
- Nature Methods, 2013, v. 10, n. 11, p. 1083, doi. 10.1038/nmeth.2656
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- Publication type:
- Article
Concordance of gene expression in human protein complexes reveals tissue specificity and pathology.
- Published in:
- Nucleic Acids Research, 2013, v. 41, n. 18, p. e171
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- Publication type:
- Article
Unraveling genomic variation from next generation sequencing data.
- Published in:
- BioData Mining, 2013, v. 6, n. 1, p. 1, doi. 10.1186/1756-0381-6-13
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- Publication type:
- Article
Single-cell paired-end genome sequencing reveals structural variation per cell cycle.
- Published in:
- Nucleic Acids Research, 2013, v. 41, n. 12, p. 6119, doi. 10.1093/nar/gkt345
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- Publication type:
- Article
Meander: visually exploring the structural variome using space-filling curves.
- Published in:
- Nucleic Acids Research, 2013, v. 41, n. 11, p. e118, doi. 10.1093/nar/gkt254
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- Publication type:
- Article