Works by Moradigaravand, Danesh

Results: 14

Unveiling the dynamics of antimicrobial utilization and resistance in a large hospital network over five years: Insights from health record data analysis.

Published in:

PLoS Digital Health, 2023, v. 2, n. 12, p. 1, doi. 10.1371/journal.pdig.0000424

By:

Moradigaravand, Danesh;
Senok, Abiola;
Al-Dabal, Laila;
Khansaheb, Hamda Hassan;
Habous, Maya;
Alsuwaidi, Hanan;
Alsheikh-Ali, Alawi

Publication type:

Article

Plasmid permissiveness of wastewater microbiomes can be predicted from 16S rRNA sequences by machine learning.

Published in:

Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad400

By:

Moradigaravand, Danesh;
Li, Liguan;
Dechesne, Arnaud;
Nesme, Joseph;
de la Cruz, Roberto;
Ahmad, Huda;
Banzhaf, Manuel;
Sørensen, Søren J;
Smets, Barth F;
Kreft, Jan-Ulrich

Publication type:

Article

ChemGAPP: a tool for chemical genomics analysis and phenotypic profiling.

Published in:

Bioinformatics, 2023, v. 39, n. 4, p. 1, doi. 10.1093/bioinformatics/btad171

By:

Doherty, Hannah M;
Kritikos, George;
Galardini, Marco;
Banzhaf, Manuel;
Moradigaravand, Danesh

Publication type:

Article

A One Health Study of the Genetic Relatedness of Klebsiella pneumoniae and Their Mobile Elements in the East of England.

Published in:

Clinical Infectious Diseases, 2020, v. 70, n. 2, p. 219, doi. 10.1093/cid/ciz174

By:

Ludden, Catherine;
Moradigaravand, Danesh;
Jamrozy, Dorota;
Gouliouris, Theodore;
Blane, Beth;
Naydenova, Plamena;
Hernandez-Garcia, Juan;
Wood, Paul;
Hadjirin, Nazreen;
Radakovic, Milorad;
Crawley, Charles;
Brown, Nicholas M;
Holmes, Mark;
Parkhill, Julian;
Peacock, Sharon J

Publication type:

Article

Recombination Accelerates Adaptation on a Large-Scale Empirical Fitness Landscape in HIV-1.

Published in:

PLoS Genetics, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pgen.1004439

By:

Moradigaravand, Danesh;
Kouyos, Roger;
Hinkley, Trevor;
Haddad, Mojgan;
Petropoulos, Christos J.;
Engelstädter, Jan;
Bonhoeffer, Sebastian

Publication type:

Article

Methicillin-Resistant Staphylococcus aureus : The Shifting Landscape in the United Arab Emirates.

Published in:

Antibiotics (2079-6382), 2025, v. 14, n. 1, p. 24, doi. 10.3390/antibiotics14010024

By:

Boucherabine, Syrine;
Nassar, Rania;
Mohamed, Lobna;
Habous, Maya;
Nabi, Anju;
Husain, Riyaz Amirali;
Alfaresi, Mubarak;
Oommen, Seema;
Khansaheb, Hamda Hassan;
Al Sharhan, Mouza;
Celiloglu, Handan;
Raja, Mubarak Hussain;
Abdelkarim, Eman;
Ali, Nishi;
Tausif, Salman;
Olowoyeye, Victory;
Soares, Nelson Cruz;
Hachim, Mahmood;
Moradigaravand, Danesh;
Everett, Dean

Publication type:

Article

Population Structure of Multidrug-Resistant Klebsiella oxytoca within Hospitals across the United Kingdom and Ireland Identifies Sharing of Virulence and Resistance Genes with K. pneumoniae.

Published in:

Genome Biology & Evolution, 2017, v. 9, n. 3, p. 574, doi. 10.1093/gbe/evx019

By:

Moradigaravand, Danesh;
Martin, Veronique;
Peacock, Sharon J.;
Parkhill, Julian

Publication type:

Article

The impact of natural transformation on adaptation in spatially structured bacterial populations.

Published in:

BMC Evolutionary Biology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/1471-2148-14-141

By:

Moradigaravand, Danesh;
Engelstädter, Jan

Publication type:

Article

In-silico identification of deleterious non-synonymous SNPs of TBX1 gene: Functional and structural impact towards 22q11.2DS.

Published in:

PLoS ONE, 2024, v. 19, n. 6, p. 1, doi. 10.1371/journal.pone.0298092

By:

Almakhari, Maitha;
Chen, Yan;
Kong, Amanda Shen-Yee;
Moradigaravand, Danesh;
Lai, Kok-Song;
Lim, Swee-Hua Erin;
Loh, Jiun-Yan;
Maran, Sathiya

Publication type:

Article

Phylogenetically informative mutations in genes implicated in antibiotic resistance in Mycobacterium tuberculosis complex.

Published in:

Genome Medicine, 2020, v. 12, n. 1, p. 1, doi. 10.1186/s13073-020-00726-5

By:

Merker, Matthias;
Kohl, Thomas A.;
Barilar, Ivan;
Andres, Sönke;
Fowler, Philip W.;
Chryssanthou, Erja;
Ängeby, Kristian;
Jureen, Pontus;
Moradigaravand, Danesh;
Parkhill, Julian;
Peacock, Sharon J.;
Schön, Thomas;
Maurer, Florian P.;
Walker, Timothy;
Köser, Claudio;
Niemann, Stefan

Publication type:

Article

The Effect of Bacterial Recombination on Adaptation on Fitness Landscapes with Limited Peak Accessibility.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 10, p. 1, doi. 10.1371/journal.pcbi.1002735

By:

Moradigaravand, Danesh;
Engelstädter, Jan

Publication type:

Article

Within-host evolution of Enterococcus faecium during longitudinal carriage and transition to bloodstream infection in immunocompromised patients.

Published in:

Genome Medicine, 2017, v. 9, p. 1, doi. 10.1186/s13073-017-0507-0

By:

Moradigaravand, Danesh;
Gouliouris, Theodore;
Blane, Beth;
Naydenova, Plamena;
Ludden, Catherine;
Crawley, Charles;
Brown, Nicholas M.;
Török, M. Estée;
Parkhill, Julian;
Peacock, Sharon J.

Publication type:

Article

Whole genome sequencing reveals high-resolution epidemiological links between clinical and environmental Klebsiella pneumoniae.

Published in:

Genome Medicine, 2017, v. 9, p. 1, doi. 10.1186/s13073-017-0397-1

By:

Runcharoen, Chakkaphan;
Moradigaravand, Danesh;
Blane, Beth;
Paksanont, Suporn;
Thammachote, Jeeranan;
Anun, Suthatip;
Parkhill, Julian;
Chantratita, Narisara;
Peacock, Sharon J.

Publication type:

Article

Prediction of antibiotic resistance in Escherichia coli from large-scale pan-genome data.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pcbi.1006258

By:

Moradigaravand, Danesh;
Parts, Leopold;
Palm, Martin;
Farewell, Anne;
Warringer, Jonas;
Mustonen, Ville

Publication type:

Article