Found: 10

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  • SBML Level 3: an extensible format for the exchange and reuse of biological models.

    Published in:
    Molecular Systems Biology, 2020, v. 16, n. 8, p. 1, doi. 10.15252/msb.20199110
    By:
    • Keating, Sarah M;
    • Waltemath, Dagmar;
    • König, Matthias;
    • Zhang, Fengkai;
    • Dräger, Andreas;
    • Chaouiya, Claudine;
    • Bergmann, Frank T;
    • Finney, Andrew;
    • Gillespie, Colin S;
    • Helikar, Tomáš;
    • Hoops, Stefan;
    • Malik‐Sheriff, Rahuman S;
    • Moodie, Stuart L;
    • Moraru, Ion I;
    • Myers, Chris J;
    • Naldi, Aurélien;
    • Olivier, Brett G;
    • Sahle, Sven;
    • Schaff, James C;
    • Smith, Lucian P
    Publication type:
    Article

  • Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1.

    Published in:
    Journal of Integrative Bioinformatics, 2020, v. 17, n. 2/3, p. 1, doi. 10.1515/jib-2020-0018
    By:
    • Smith, Lucian P.;
    • Moodie, Stuart L.;
    • Bergmann, Frank T.;
    • Gillespie, Colin;
    • Keating, Sarah M.;
    • König, Matthias;
    • Myers, Chris J.;
    • Swat, Maciek J.;
    • Wilkinson, Darren J.;
    • Hucka, Michael
    Publication type:
    Article

  • Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0.

    Published in:
    Journal of Integrative Bioinformatics, 2019, v. 16, n. 2, p. 1, doi. 10.1515/jib-2019-0022
    By:
    • Rougny1, Adrien;
    • Touré, Vasundra;
    • Moodie, Stuart;
    • Balaur, Irina;
    • Czauderna, Tobias;
    • Borlinghaus, Hanna;
    • Dogrusoz, Ugur;
    • Mazein, Alexander;
    • Dräger, Andreas;
    • Blinov, Michael L.;
    • Villéger, Alice;
    • Haw, Robin;
    • Demir, Emek;
    • Huaiyu Mi;
    • Sorokin, Anatoly;
    • Schreiber, Falk;
    • Luna, Augustin
    Publication type:
    Article

  • Complex Bayesian Modeling Workflows Encoding and Execution Made Easy With a Novel WinBUGS Plugin of the Drug Disease Model Resources Interoperability Framework.

    Published in:
    CPT: Pharmacometrics & Systems Pharmacology, 2018, v. 7, n. 5, p. 298, doi. 10.1002/psp4.12285
    By:
    • Larizza, Cristiana;
    • Borella, Elisa;
    • Pasotti, Lorenzo;
    • Tartaglione, Palma;
    • Smith, Mike;
    • Moodie, Stuart;
    • Magni, Paolo
    Publication type:
    Article

  • Model Description Language (MDL): A Standard for Modeling and Simulation.

    Published in:
    CPT: Pharmacometrics & Systems Pharmacology, 2017, v. 6, n. 10, p. 647, doi. 10.1002/psp4.12222
    By:
    • Smith, Mike K.;
    • Moodie, Stuart L.;
    • Bizzotto, Roberto;
    • Blaudez, Eric;
    • Borella, Elisa;
    • Carrara, Letizia;
    • Chan, Phylinda;
    • Chenel, Marylore;
    • Comets, Emmanuelle;
    • Gieschke, Ronald;
    • Harling, Kajsa;
    • Harnisch, Lutz;
    • Hartung, Niklas;
    • Hooker, Andrew C.;
    • Karlsson, Mats O.;
    • Kaye, Richard;
    • Kloft, Charlotte;
    • Kokash, Natallia;
    • Lavielle, Marc;
    • Lestini, Giulia
    Publication type:
    Article

  • COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project.

    Published in:
    BMC Bioinformatics, 2014, v. 15, n. 1, p. 61, doi. 10.1186/s12859-014-0369-z
    By:
    • Bergmann, Frank T.;
    • Adams, Richard;
    • Moodie, Stuart;
    • Cooper, Jonathan;
    • Glont, Mihai;
    • Golebiewski, Martin;
    • Hucka, Michael;
    • Laibe, Camille;
    • Miller, Andrew K.;
    • Nickerson, David P.;
    • Olivier, Brett G.;
    • Rodriguez, Nicolas;
    • Sauro, Herbert M.;
    • Scharm, Martin;
    • Soiland-Reyes, Stian;
    • Waltemath, Dagmar;
    • Yvon, Florent;
    • Le Novère, Nicolas
    Publication type:
    Article

  • Software support for SBGN maps: SBGN-ML and LibSBGN.

    Published in:
    Bioinformatics, 2012, v. 28, n. 15, p. 2016, doi. 10.1093/bioinformatics/bts270
    By:
    • van Iersel, Martijn P.;
    • Villéger, Alice C.;
    • Czauderna, Tobias;
    • Boyd, Sarah E.;
    • Bergmann, Frank T.;
    • Luna, Augustin;
    • Demir, Emek;
    • Sorokin, Anatoly;
    • Dogrusoz, Ugur;
    • Matsuoka, Yukiko;
    • Funahashi, Akira;
    • Aladjem, Mirit I.;
    • Mi, Huaiyu;
    • Moodie, Stuart L.;
    • Kitano, Hiroaki;
    • Le Novère, Nicolas;
    • Schreiber, Falk
    Publication type:
    Article

  • Erratum: The Systems Biology Graphical Notation.

    Published in:
    2009
    By:
    • Le Novère, Nicolas;
    • Hucka, Michael;
    • Mi, Huaiyu;
    • Moodie, Stuart;
    • Schreiber, Falk;
    • Sorokin, Anatoly;
    • Demir, Emek;
    • Wegner, Katja;
    • Aladjem, Mirit I;
    • Wimalaratne, Sarala M;
    • Bergman, Frank T;
    • Gauges, Ralph;
    • Ghazal, Peter;
    • Kawaji, Hideya;
    • Li, Lu;
    • Matsuoka, Yukiko;
    • Villéger, Alice;
    • Boyd, Sarah E;
    • Calzone, Laurence;
    • Courtot, Melanie
    Publication type:
    Correction notice

  • The Systems Biology Graphical Notation.

    Published in:
    Nature Biotechnology, 2009, v. 27, n. 8, p. 735, doi. 10.1038/nbt.1558
    By:
    • Le Novére, Nicolas;
    • Hucka, Michael;
    • Mi, Huaiyu;
    • Moodie, Stuart;
    • Schreiber, Falk;
    • Sorokin, Anatoly;
    • Demir, Emek;
    • Wegner, Katja;
    • Aladjem, Mirit I.;
    • Wimalaratne, Sarala M.;
    • Bergman, Frank T.;
    • Gauges, Ralph;
    • Ghazal, Peter;
    • Kawaji, Hideya;
    • Li, Lu;
    • Matsuoka, Yukiko;
    • Villéger, Alice;
    • Boyd, Sarah E.;
    • Calzone, Laurence;
    • Courtot, Melanie
    Publication type:
    Article

  • GPX-Macrophage Expression Atlas: A database for expression profiles of macrophages challenged with a variety of pro-inflammatory, anti-inflammatory, benign and pathogen insults.

    Published in:
    BMC Genomics, 2005, v. 6, p. 178, doi. 10.1186/1471-2164-6-178
    By:
    • Grimes, Graeme R;
    • Moodie, Stuart;
    • Beattie, John S;
    • Craigon, Marie;
    • Dickinson, Paul;
    • Forster, Thorsten;
    • Livingston, Andrew D;
    • Mewissen, Muriel;
    • Robertson, Kevin A;
    • Ross, Alan J;
    • Sing, Garwin;
    • Ghazal, Peter
    Publication type:
    Article