Found: 17
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SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools.
- Published in:
- BMC Systems Biology, 2013, v. 7, n. 1, p. 3, doi. 10.1186/1752-0509-7-135
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- Article
YEASTRACT: an upgraded database for the analysis of transcription regulatory networks in Saccharomyces cerevisiae.
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- Nucleic Acids Research, 2018, v. 46, n. D1, p. D348, doi. 10.1093/nar/gkx842
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- Article
YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae.
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- Nucleic Acids Research, 2008, v. 36, p. D132
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- Article
Not Seeing the Forest for the Trees: Size of the Minimum Spanning Trees (MSTs) Forest and Branch Significance in MST-Based Phylogenetic Analysis.
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- PLoS ONE, 2015, v. 10, n. 3, p. 1, doi. 10.1371/journal.pone.0119315
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- Article
Logical Modeling and Dynamical Analysis of Cellular Networks.
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- Frontiers in Genetics, 2016, p. 1, doi. 10.3389/fgene.2016.00094
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- Article
Repairing Boolean logical models from time-series data using Answer Set Programming.
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- Algorithms for Molecular Biology, 2019, v. 14, n. 1, p. N.PAG, doi. 10.1186/s13015-019-0145-8
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- Article
Iterative Train Scheduling under Disruption with Maximum Satisfiability.
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- Journal of Artificial Intelligence Research, 2024, v. 79, p. 1047, doi. 10.1613/jair.1.14924
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- Article
Assessing regulatory features of the current transcriptional network of Saccharomyces cerevisiae.
- Published in:
- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-74043-7
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- Article
YEASTRACT+: a portal for cross-species comparative genomics of transcription regulation in yeasts.
- Published in:
- Nucleic Acids Research, 2020, v. 48, n. D1, p. D642, doi. 10.1093/nar/gkz859
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- Article
Introducing UniCorT: an iterative university course timetabling tool with MaxSAT.
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- Journal of Scheduling, 2022, v. 25, n. 4, p. 371, doi. 10.1007/s10951-021-00695-6
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- Article
Disruptions in timetables: a case study at Universidade de Lisboa.
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- Journal of Scheduling, 2021, v. 24, n. 1, p. 35, doi. 10.1007/s10951-020-00666-3
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- Article
Cooperative development of logical modelling standards and tools with CoLoMoTo.
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- Bioinformatics, 2015, v. 31, n. 7, p. 1154, doi. 10.1093/bioinformatics/btv013
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- Article
Temporal logic patterns for querying dynamic models of cellular interaction networks.
- Published in:
- Bioinformatics, 2008, v. 24, n. 16, p. i227, doi. 10.1093/bioinformatics/btn275
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- Article
Estimating Attractor Reachability in Asynchronous Logical Models.
- Published in:
- Frontiers in Physiology, 2018, p. N.PAG, doi. 10.3389/fphys.2018.01161
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- Article
Logical Modeling and Analysis of Cellular Regulatory Networks With GINsim 3.0.
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- Frontiers in Physiology, 2018, p. N.PAG, doi. 10.3389/fphys.2018.00646
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- Article
The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks.
- Published in:
- Frontiers in Physiology, 2018, p. N.PAG, doi. 10.3389/fphys.2018.00680
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- Article
From a genome assembly to full regulatory network prediction: the case study of Rhodotorula toruloides putative Haa1-regulon.
- Published in:
- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04312-3
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- Article