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Author Correction: The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data.
- Published in:
- 2022
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- Publication type:
- Correction Notice
The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29697-4
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- Publication type:
- Article
The interplay between asymmetric and symmetric DNA loop extrusion.
- Published in:
- eLife, 2021, p. 1, doi. 10.7554/eLife.63528
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- Publication type:
- Article
Molecular basis of CTCF binding polarity in genome folding.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-19283-x
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- Publication type:
- Article
Cooler: scalable storage for Hi-C data and other genomically labeled arrays.
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- Bioinformatics, 2020, v. 36, n. 1, p. 311, doi. 10.1093/bioinformatics/btz540
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- Publication type:
- Article
Highly structured homolog pairing reflects functional organization of the Drosophila genome.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12208-3
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- Publication type:
- Article
The genome-wide multi-layered architecture of chromosome pairing in early Drosophila embryos.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12211-8
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- Publication type:
- Article
HiGlass: web-based visual exploration and analysis of genome interaction maps.
- Published in:
- Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1486-1
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- Publication type:
- Article
A mechanism of cohesin-dependent loop extrusion organizes zygotic genome architecture.
- Published in:
- EMBO Journal, 2017, v. 36, n. 24, p. 3600, doi. 10.15252/embj.201798083
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- Publication type:
- Article
Host proteostasis modulates influenza evolution.
- Published in:
- eLife, 2017, p. 1, doi. 10.7554/eLife.28652
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- Publication type:
- Article
Compaction and segregation of sister chromatids via active loop extrusion.
- Published in:
- eLife, 2016, p. 1, doi. 10.7554/eLife.14864
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- Publication type:
- Article
History of chromosome rearrangements reflects the spatial organization of yeast chromosomes.
- Published in:
- Journal of Bioinformatics & Computational Biology, 2016, v. 14, n. 2, p. -1, doi. 10.1142/S021972001641002X
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- Publication type:
- Article
Modeling chromosomes: Beyond pretty pictures.
- Published in:
- FEBS Letters, 2015, v. 589, n. 20PartA, p. 3031, doi. 10.1016/j.febslet.2015.09.004
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- Publication type:
- Article
Cohesin-dependent globules and heterochromatin shape 3D genome architecture in S. pombe.
- Published in:
- Nature, 2014, v. 516, n. 7531, p. 432, doi. 10.1038/nature13833
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- Publication type:
- Article
Chromatin Loops as Allosteric Modulators of Enhancer-Promoter Interactions.
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- PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003867
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- Publication type:
- Article
Biological techniques: Chromosomes captured one by one.
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- Nature, 2013, v. 502, n. 7469, p. 45, doi. 10.1038/nature12691
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- Publication type:
- Article
Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data.
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- Nature Reviews Genetics, 2013, v. 14, n. 6, p. 390, doi. 10.1038/nrg3454
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- Publication type:
- Article
Polymer models of topological insulators.
- Published in:
- 2013
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- Publication type:
- Conference Paper
Polymer models of yeast S. cerevisiae genome organization.
- Published in:
- 2013
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- Publication type:
- Conference Paper
S cerevisiae genome as a confined equilibrium polymer brush.
- Published in:
- 2013
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- Publication type:
- Conference Paper
Chromosomal architecture changes upon cell differentiation.
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- Epigenetics & Chromatin, 2013, v. 6, n. Suppl 1, p. 1, doi. 10.1186/1756-8935-6-S1-P130
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- Publication type:
- Article
Iterative correction of Hi-C data reveals hallmarks of chromosome organization.
- Published in:
- Nature Methods, 2012, v. 9, n. 10, p. 999, doi. 10.1038/nmeth.2148
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- Publication type:
- Article
Three-Dimensional Genome Architecture Influences Partner Selection for Chromosomal Translocations in Human Disease.
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- PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0044196
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- Publication type:
- Article
High order chromatin architecture shapes the landscape of chromosomal alterations in cancer.
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- Nature Biotechnology, 2011, v. 29, n. 12, p. 1109, doi. 10.1038/nbt.2049
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- Publication type:
- Article
Bridging the Resolution Gap in Structural Modeling of 3D Genome Organization.
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- PLoS Computational Biology, 2011, v. 7, n. 7, p. 1, doi. 10.1371/journal.pcbi.1002125
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- Publication type:
- Article
Dancing on DNA: Kinetic Aspects of Search Processes on DNA.
- Published in:
- ChemPhysChem, 2011, v. 12, n. 8, p. 1481, doi. 10.1002/cphc.201100112
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- Publication type:
- Article
The fractal globule as a model of chromatin architecture in the cell.
- Published in:
- Chromosome Research, 2011, v. 19, n. 1, p. 37, doi. 10.1007/s10577-010-9177-0
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- Publication type:
- Article
A Stevedore's Protein Knot.
- Published in:
- PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000731
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- Publication type:
- Article
Using genome-wide measurements for computational prediction of SH2–peptide interactions.
- Published in:
- Nucleic Acids Research, 2009, v. 37, n. 14, p. 4629, doi. 10.1093/nar/gkp394
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- Publication type:
- Article
Biophysics: Cell commuters avoid delays.
- Published in:
- Nature Physics, 2008, v. 4, n. 2, p. 93, doi. 10.1038/nphys848
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- Publication type:
- Article
Predicting transcription factor specificity with all-atom models.
- Published in:
- Nucleic Acids Research, 2008, v. 36, n. 19, p. 6209, doi. 10.1093/nar/gkn589
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- Publication type:
- Article
Spatial effects on the speed and reliability of protein–DNA search.
- Published in:
- Nucleic Acids Research, 2008, v. 36, n. 11, p. 3570, doi. 10.1093/nar/gkn173
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- Publication type:
- Article
Operating Regimes of Signaling Cycles: Statics, Dynamics, and Noise Filtering.
- Published in:
- PLoS Computational Biology, 2007, v. 3, n. 12, p. e246, doi. 10.1371/journal.pcbi.0030246
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- Publication type:
- Article
Protein knot server: detection of knots in protein structures.
- Published in:
- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W425, doi. 10.1093/nar/gkm312
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- Publication type:
- Article
Intricate Knots in Proteins: Function and Evolution.
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- PLoS Computational Biology, 2006, v. 2, n. 9, p. e122, doi. 10.1371/journal.pcbi.0020122
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- Publication type:
- Article
CoC: a database of universally conserved residues in protein folds.
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- Bioinformatics, 2005, v. 21, n. 10, p. 2539, doi. 10.1093/bioinformatics/bti360
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- Publication type:
- Article
Fold recognition with minimal gaps.
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- Proteins, 2003, v. 51, n. 4, p. 531, doi. 10.1002/prot.10402
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- Publication type:
- Article
Comparison of two optimization methods to derive energy parameters for protein folding: Perceptron and Z score.
- Published in:
- Proteins, 2000, v. 41, n. 2, p. 192, doi. 10.1002/1097-0134(20001101)41:2<192::AID-PROT40>3.0.CO;2-3
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- Publication type:
- Article
Kinetics, thermodynamics and evolution of non-native interactions in a protein folding nucleus.
- Published in:
- Nature Structural Biology, 2000, v. 7, n. 4, p. 336
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- Publication type:
- Article
Protein fold recognition and dynamics in the space of contact maps.
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- Proteins, 1996, v. 26, n. 4, p. 391, doi. 10.1002/(SICI)1097-0134(199612)26:4<391::AID-PROT3>3.0.CO;2-F
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- Publication type:
- Article