Works by Mills, Ryan E.

Results: 25

Expanding the Definition of the Classical Bipartite Nuclear Localization Signal.

Published in:

Traffic, 2010, v. 11, n. 3, p. 311, doi. 10.1111/j.1600-0854.2009.01028.x

By:

Lange, Allison;
McLane, Laura M.;
Mills, Ryan E.;
Devine, Scott E.;
Corbett, Anita H.

Publication type:

Article

Refinement of primate copy number variation hotspots identifies candidate genomic regions evolving under positive selection.

Published in:

Genome Biology, 2011, v. 12, n. 5, p. 1, doi. 10.1186/gb-2011-12-5-r52

By:

Gokcumen, Omer;
Babb, Paul L.;
Iskow, Rebecca C.;
Qihui Zhu;
Xinghua Shi;
Mills, Ryan E.;
Ionita-Laza, Iuliana;
Vallender, Eric J.;
Clark, Andrew G.;
Johnson, Welkin E.;
Lee, Charles

Publication type:

Article

Mapping copy number variation by population-scale genome sequencing.

Published in:

Nature, 2011, v. 470, n. 7332, p. 59, doi. 10.1038/nature09708

By:

Mills, Ryan E.;
Walter, Klaudia;
Stewart, Chip;
Handsaker, Robert E.;
Chen, Ken;
Alkan, Can;
Abyzov, Alexej;
Yoon, Seungtai Chris;
Kai Ye;
Cheetham, R. Keira;
Chinwalla, Asif;
Conrad, Donald F.;
Yutao Fu;
Grubert, Fabian;
Hajirasouliha, Iman;
Hormozdiari, Fereydoun;
Iakoucheva, Lilia M.;
Iqbal, Zamin;
Shuli Kang;
Kidd, Jeffrey M.

Publication type:

Article

Resolving complex structural genomic rearrangements using a randomized approach.

Published in:

Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-0993-1

By:

Xuefang Zhao;
Emery, Sarah B.;
Myers, Bridget;
Kidd, Jeffrey M.;
Mills, Ryan E.

Publication type:

Article

Somatic nuclear mitochondrial DNA insertions are prevalent in the human brain and accumulate over time in fibroblasts.

Published in:

PLoS Biology, 2024, v. 22, n. 8, p. 1, doi. 10.1371/journal.pbio.3002723

By:

Zhou, Weichen;
Karan, Kalpita R.;
Gu, Wenjin;
Klein, Hans-Ulrich;
Sturm, Gabriel;
De Jager, Philip L.;
Bennett, David A.;
Hirano, Michio;
Picard, Martin;
Mills, Ryan E.

Publication type:

Article

Candida albicans selection for human commensalism results in substantial within-host diversity without decreasing fitness for invasive disease.

Published in:

PLoS Biology, 2023, v. 21, n. 5, p. 1, doi. 10.1371/journal.pbio.3001822

By:

Anderson, Faith M.;
Visser, Noelle D.;
Amses, Kevin R.;
Hodgins-Davis, Andrea;
Weber, Alexandra M.;
Metzner, Katura M.;
McFadden, Michael J.;
Mills, Ryan E.;
O'Meara, Matthew J.;
James, Timothy Y.;
O'Meara, Teresa R.

Publication type:

Article

SearcHPV: A novel approach to identify and assemble human papillomavirus–host genomic integration events in cancer.

Published in:

Cancer (0008543X), 2021, v. 127, n. 19, p. 3531, doi. 10.1002/cncr.33691

By:

Pinatti, Lisa M.;
Gu, Wenjin;
Wang, Yifan;
Elhossiny, Ahmed;
Bhangale, Apurva D.;
Brummel, Collin V.;
Carey, Thomas E.;
Mills, Ryan E.;
Brenner, J. Chad

Publication type:

Article

SquiggleNet: real-time, direct classification of nanopore signals.

Published in:

Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02511-y

By:

Bao, Yuwei;
Wadden, Jack;
Erb-Downward, John R.;
Ranjan, Piyush;
Zhou, Weichen;
McDonald, Torrin L.;
Mills, Ryan E.;
Boyle, Alan P.;
Dickson, Robert P.;
Blaauw, David;
Welch, Joshua D.

Publication type:

Article

Translation of upstream open reading frames in a model of neuronal differentiation.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-5775-1

By:

Rodriguez, Caitlin M.;
Chun, Sang Y.;
Mills, Ryan E.;
Todd, Peter K.

Publication type:

Article

Copy number variation genotyping using family information.

Published in:

BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-157

By:

Chu, Jen-hwa;
Rogers, Angela;
Ionita-Laza, Iuliana;
Darvishi, Katayoon;
Mills, Ryan E.;
Lee, Charles;
Raby, Benjamin A.

Publication type:

Article

Identification and characterization of occult human-specific LINE-1 insertions using long-read sequencing technology.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 3, p. 1146, doi. 10.1093/nar/gkz1173

By:

Zhou, Weichen;
Emery, Sarah B;
Flasch, Diane A;
Wang, Yifan;
Kwan, Kenneth Y;
Kidd, Jeffrey M;
Moran, John V;
Mills, Ryan E

Publication type:

Article

The genomic landscape of polymorphic human nuclear mitochondrial insertions.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 20, p. 12640, doi. 10.1093/nar/gku1038

By:

Dayama, Gargi;
Emery, Sarah B.;
Kidd, Jeffrey M.;
Mills, Ryan E.

Publication type:

Article

Does germ-line deletion of the PIP gene constitute a widespread risk for cancer?

Published in:

European Journal of Human Genetics, 2014, v. 22, n. 3, p. 307, doi. 10.1038/ejhg.2013.134

By:

Silva, Amanda G;
Krepischi, Ana CV;
Torrezan, Giovana T;
Capelli, Leonardo P;
Carraro, Dirce M;
D'Angelo, Carla S;
Koiffmann, Celia P;
Zatz, Mayana;
Naslavsky, Michel S;
Masotti, Cibele;
Otto, Paulo A;
Achatz, Maria IW;
Mills, Ryan E;
Lee, Charles;
Pearson, Peter L;
Rosenberg, Carla

Publication type:

Article

Prognostic model for multiple myeloma progression integrating gene expression and clinical features.

Published in:

GigaScience, 2019, v. 8, n. 12, p. N.PAG, doi. 10.1093/gigascience/giz153

By:

Sun, Chen;
Li, Hongyang;
Mills, Ryan E;
Guan, Yuanfang

Publication type:

Article

A recurrence-based approach for validating structural variation using long-read sequencing technology.

Published in:

GigaScience, 2017, v. 6, n. 8, p. 1, doi. 10.1093/gigascience/gix061

By:

Xuefang Zhao;
Weber, Alexandra M.;
Mills, Ryan E.

Publication type:

Article

Small insertions and deletions (INDELs) in human genomes.

Published in:

Human Molecular Genetics, 2010, v. 19, n. R2, p. R131, doi. 10.1093/hmg/ddq400

By:

Mullaney, Julienne M.;
Mills, Ryan E.;
Pittard, W. Stephen;
Devine, Scott E.

Publication type:

Article

Analysis of Human Papilloma Virus Content and Integration in Mucoepidermoid Carcinoma.

Published in:

Viruses (1999-4915), 2022, v. 14, n. 11, p. 2353, doi. 10.3390/v14112353

By:

Gu, Wenjin;
Bhangale, Apurva;
Heft Neal, Molly E.;
Smith, Josh D.;
Brummel, Collin;
McHugh, Jonathan B.;
Spector, Matthew E.;
Mills, Ryan E.;
Brenner, J. Chad

Publication type:

Article

Nuclear mitochondrial DNA insertions are prevalent in the human brain and accumulate over time in fibroblasts.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2024, v. 20, p. 1, doi. 10.1002/alz.085457

By:

Zhou, Weichen;
Karan, Kalpita R;
Gu, Wenjin;
Klein, Hans‐Ulrich;
Sturm, Gabriel;
De Jager, Philip L.;
Bennett, David A.;
Hirano, Michio;
Picard, Martin;
Mills, Ryan E

Publication type:

Article

SPECtre: a spectral coherence-based classifier of actively translated transcripts from ribosome profiling sequence data.

Published in:

BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-1355-4

By:

Chun, Sang Y.;
Rodriguez, Caitlin M.;
Todd, Peter K.;
Mills, Ryan E.

Publication type:

Article

Association of CNVs with methylation variation.

Published in:

NPJ Genomic Medicine, 2020, v. 5, n. 1, p. N.PAG, doi. 10.1038/s41525-020-00145-w

By:

Shi, Xinghua;
Radhakrishnan, Saranya;
Wen, Jia;
Chen, Jin Yun;
Chen, Junjie;
Lam, Brianna Ashlyn;
Mills, Ryan E.;
Stranger, Barbara E.;
Lee, Charles;
Setlur, Sunita R.

Publication type:

Article

Complex reorganization and predominant non-homologous repair following chromosomal breakage in karyotypically balanced germline rearrangements and transgenic integration.

Published in:

Nature Genetics, 2012, v. 44, n. 4, p. 390, doi. 10.1038/ng.2202

By:

Chiang, Colby;
Jacobsen, Jessie C;
Ernst, Carl;
Hanscom, Carrie;
Heilbut, Adrian;
Blumenthal, Ian;
Mills, Ryan E;
Kirby, Andrew;
Lindgren, Amelia M;
Rudiger, Skye R;
McLaughlan, Clive J;
Bawden, C Simon;
Reid, Suzanne J;
Faull, Richard L M;
Snell, Russell G;
Hall, Ira M;
Shen, Yiping;
Ohsumi, Toshiro K;
Borowsky, Mark L;
Daly, Mark J

Publication type:

Article

Discovery of common Asian copy number variants using integrated high-resolution array CGH and massively parallel DNA sequencing.

Published in:

Nature Genetics, 2010, v. 42, n. 5, p. 400, doi. 10.1038/ng.555

By:

Hansoo Park;
Jong-Il Kim;
Young Seok Ju;
Omer Gokcumen;
Ryan E Mills;
Sheehyun Kim;
Seungbok Lee;
Dongwhan Suh;
Dongwan Hong;
Hyunseok Peter Kang;
Yun Joo Yoo;
Jong-Yeon Shin;
Hyun-Jin Kim;
Maryam Yavartanoo;
Young Wha Chang;
Jung-Sook Ha;
Wilson Chong;
Ga-Ram Hwang;
Katayoon Darvishi;
HyeRan Kim

Publication type:

Article

Increased Genomic Integrity of an Improved Protein-Based Mouse Induced Pluripotent Stem Cell Method Compared With Current Viral-Induced Strategies.

Published in:

Stem Cells Translational Medicine, 2014, v. 3, n. 5, p. 599, doi. 10.5966/sctm.2013-0149

By:

HANSOO PARK;
DOHOON KIM;
CHUN-HYUNG KIM;
MILLS, RYAN E.;
MI-YOON CHANG;
ISKOW, REBECCA CHERYL;
SANGHYEOK KO;
JUNG-IL MOON;
HYUN WOO CHOI;
PAULO SNG MAN YOO;
JEONG TAE DO;
MIN-JOON HAN;
EUN GYO LEE;
JOON KI JUNG;
CHENGSHENG ZHANG;
LANZA, ROBERT;
KWANG-SOO KIM

Publication type:

Article

Cas9 targeted enrichment of mobile elements using nanopore sequencing.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23918-y

By:

McDonald, Torrin L.;
Zhou, Weichen;
Castro, Christopher P.;
Mumm, Camille;
Switzenberg, Jessica A.;
Mills, Ryan E.;
Boyle, Alan P.

Publication type:

Article

FusorSV: an algorithm for optimally combining data from multiple structural variation detection methods.

Published in:

Genome Biology, 2018, v. 19, p. 1, doi. 10.1186/s13059-018-1404-6

By:

Becker, Timothy;
Lee, Wan-Ping;
Leone, Joseph;
Zhu, Qihui;
Zhang, Chengsheng;
Liu, Silvia;
Sargent, Jack;
Shanker, Kritika;
Mil-homens, Adam;
Cerveira, Eliza;
Ryan, Mallory;
Cha, Jane;
Navarro, Fabio C. P.;
Galeev, Timur;
Gerstein, Mark;
Mills, Ryan E.;
Shin, Dong-Guk;
Lee, Charles;
Malhotra, Ankit

Publication type:

Article