Works by Mikami, Bunzo

Results: 56

Engineered membrane superchannel improves bioremediation potential of dioxin-degrading bacteria.

Published in:

Nature Biotechnology, 2006, v. 24, n. 2, p. 188, doi. 10.1038/nbt1181

By:

Aso, Yuji;
Miyamoto, Yukiko;
Harada, Karen Mine;
Momma, Keiko;
Kawai, Shigeyuki;
Hashimoto, Wataru;
Mikami, Bunzo;
Murata, Kousaku

Publication type:

Article

A three-component monooxygenase from Rhodococcus wratislaviensis may expand industrial applications of bacterial enzymes.

Published in:

Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-020-01555-3

By:

Hibi, Makoto;
Fukuda, Dai;
Kenchu, Chihiro;
Nojiri, Masutoshi;
Hara, Ryotaro;
Takeuchi, Michiki;
Aburaya, Shunsuke;
Aoki, Wataru;
Mizutani, Kimihiko;
Yasohara, Yoshihiko;
Ueda, Mitsuyoshi;
Mikami, Bunzo;
Takahashi, Satomi;
Ogawa, Jun

Publication type:

Article

Relationship between the induced‐fit loop and the activity of Klebsiella pneumoniae pullulanase.

Published in:

Acta Crystallographica: Section D, Structural Biology, 2019, v. 75, n. 9, p. 792, doi. 10.1107/S2059798319010660

By:

Saka, Naoki;
Malle, Dominggus;
Iwamoto, Hiroyuki;
Takahashi, Nobuyuki;
Mizutani, Kimihiko;
Mikami, Bunzo

Publication type:

Article

High‐resolution crystal structures of the glycoside hydrolase family 45 endoglucanase EG27II from the snail Ampullaria crossean.

Published in:

Acta Crystallographica: Section D, Structural Biology, 2019, v. 75, n. 4, p. 426, doi. 10.1107/S2059798319003000

By:

Nomura, Taisuke;
Iwase, Hisamu;
Saka, Naoki;
Takahashi, Nobuyuki;
Mikami, Bunzo;
Mizutani, Kimihiko

Publication type:

Article

Elucidation of the mechanism of interaction between Klebsiella pneumoniae pullulanase and cyclodextrin.

Published in:

Acta Crystallographica: Section D, Structural Biology, 2018, v. 74, n. 11, p. 1115, doi. 10.1107/S2059798318014523

By:

Saka, Naoki;
Iwamoto, Hiroyuki;
Malle, Dominggus;
Takahashi, Nobuyuki;
Mizutani, Kimihiko;
Mikami, Bunzo

Publication type:

Article

Streptococcal phosphotransferase system imports unsaturated hyaluronan disaccharide derived from host extracellular matrices.

Published in:

PLoS ONE, 2019, v. 14, n. 11, p. 1, doi. 10.1371/journal.pone.0224753

By:

Oiki, Sayoko;
Nakamichi, Yusuke;
Maruyama, Yukie;
Mikami, Bunzo;
Murata, Kousaku;
Hashimoto, Wataru

Publication type:

Article

Crystal Structure of Cold-Active Protein-Tyrosine Phosphatase from a Psychrophile, Shewanella sp.

Published in:

Journal of Biochemistry, 2005, v. 137, n. 1, p. 69, doi. 10.1093/jb/mvi010

By:

Tsuruta, Hiroki;
Mikami, Bunzo;
Aizono, Yasuo

Publication type:

Article

Tyrosine 265 of Alanine Racemase Serves as a Base Abstracting α-Hydrogen from L-Alanine: The Counterpart Residue to Lysine 39 Specific to D-Alanine.

Published in:

Journal of Biochemistry, 1999, v. 126, n. 4, p. 781, doi. 10.1093/oxfordjournals.jbchem.a022517

By:

Watanabe, Akira;
Yoshimura, Tohru;
Mikami, Bunzo;
Esaki, Nobuyoshi

Publication type:

Article

The Crystal Structure of Lipase II from Rhizopus niveus at 2.2 Å Resolution.

Published in:

Journal of Biochemistry, 1996, v. 120, n. 3, p. 505, doi. 10.1093/oxfordjournals.jbchem.a021442

By:

Kohno, Mitsutaka;
Funatsu, Jiro;
Mikami, Bunzo;
Kugimiya, Wataru;
Matsuo, Takaharu;
Marita, Yuhei

Publication type:

Article

Crystallization and Preliminary X-Ray Diffraction Studies of N-Acyl-D-glucosamine 2-Epimerase from Porcine Kidney.

Published in:

Journal of Biochemistry, 1996, v. 120, n. 3, p. 481, doi. 10.1093/oxfordjournals.jbchem.a021437

By:

Maru, Isafumi;
Ohnish, Jun;
Ohta, Yasuhiro;
Hashimoto, Wataru;
Tsukada, Yoji;
Kousaku, Murata;
Mikami, Bunzo

Publication type:

Article

Insights into the catalytic mechanism of Grimontia hollisae collagenase through structural and mutational analyses.

Published in:

FEBS Letters, 2023, v. 597, n. 19, p. 2473, doi. 10.1002/1873-3468.14732

By:

Ueshima, Saori;
Yasumoto, Mizuki;
Kitagawa, Yuto;
Akazawa, Kaho;
Takita, Teisuke;
Tanaka, Keisuke;
Hattori, Shunji;
Mizutani, Kimihiko;
Mikami, Bunzo;
Yasukawa, Kiyoshi

Publication type:

Article

Crystal structure of peptide deformylase from Staphylococcus aureus in complex with actinonin, a naturally occurring antibacterial agent.

Published in:

Proteins, 2004, v. 57, n. 3, p. 639, doi. 10.1002/prot.20231

By:

Yoon, Hye-Jin;
Kim, Hye Lee;
Lee, Soo-Kyoung;
Kim, Hyun-Woo;
Kim, Hyung-Wook;
Lee, Jae Young;
Mikami, Bunzo;
Suh, Se Won

Publication type:

Article

Conformational Change in the Active Site of Streptococcal Unsaturated Glucuronyl Hydrolase Through Site-Directed Mutagenesis at Asp-115.

Published in:

Protein Journal, 2016, v. 35, n. 4, p. 300, doi. 10.1007/s10930-016-9673-y

By:

Nakamichi, Yusuke;
Oiki, Sayoko;
Mikami, Bunzo;
Murata, Kousaku;
Hashimoto, Wataru

Publication type:

Article

The role of group bulkiness in the catalytic activity of psychrophile cold-active protein tyrosine phosphatase.

Published in:

FEBS Journal, 2008, v. 275, n. 17, p. 4317, doi. 10.1111/j.1742-4658.2008.06575.x

By:

Tsuruta, Hiroki;
Mikami, Bunzo;
Yamamoto, Chiaki;
Yamagata, Hiroshi

Publication type:

Article

Purification and Some Properties of Pheophorbidase in Chenopodium album.

Published in:

Plant & Cell Physiology, 1999, v. 40, n. 1, p. 104, doi. 10.1093/oxfordjournals.pcp.a029466

By:

Watanabe, Kenji;
Ohta, Hiroyuki;
Tsuchiya, Tohru;
Mikami, Bunzo;
Masuda, Tatsuru;
Shioi, Yuzo;
Takamiya, Ken-ichiro

Publication type:

Article

Purification and Characterization of Two Isozymes of Chlorophyllase from Mature Leaves of Chenopodium album.

Published in:

Plant & Cell Physiology, 1997, v. 38, n. 9, p. 1026, doi. 10.1093/oxfordjournals.pcp.a029267

By:

Tsuchiya, Tohru;
Ohta, Hiroyuki;
Masuda, Tatsuru;
Mikami, Bunzo;
Kita, Noriaki;
Shioi, Yuzo;
Takamiya, Ken-ichiro

Publication type:

Article

Structure of Spo0M, a sporulation-control protein from Bacillus subtilis.

Published in:

Acta Crystallographica: Section F, Structural Biology Communications, 2015, v. 71, n. 12, p. 1488, doi. 10.1107/S2053230X15020919

By:

Sonoda, Yo;
Mizutani, Kimihiko;
Mikami, Bunzo

Publication type:

Article

Substrate size-dependent conformational changes of bacterial pectin-binding protein crucial for chemotaxis and assimilation.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-16540-5

By:

Anamizu, Kotaro;
Takase, Ryuichi;
Hio, Mamoru;
Watanabe, Daisuke;
Mikami, Bunzo;
Hashimoto, Wataru

Publication type:

Article

Crystal structure of the ternary complex of TCR, MHC class I and lipopeptides.

Published in:

International Immunology, 2020, v. 32, n. 12, p. 805, doi. 10.1093/intimm/dxaa050

By:

Morita, Daisuke;
Iwashita, Chieri;
Mizutani, Tatsuaki;
Mori, Naoki;
Mikami, Bunzo;
Sugita, Masahiko

Publication type:

Article

Multifunctional 5-hydroxyconiferaldehyde O-methyltransferases (CAldOMTs) in plant metabolism.

Published in:

Journal of Experimental Botany, 2024, v. 75, n. 6, p. 1671, doi. 10.1093/jxb/erae011

By:

Lam, Lydia Pui Ying;
Lui, Andy C W;
Bartley, Laura E;
Mikami, Bunzo;
Umezawa, Toshiaki;
Lo, Clive

Publication type:

Article

Mutational studies of the peptidoglycan hydrolase FIgJ of Sphingomonas sp. strain A1.

Published in:

Journal of Basic Microbiology, 2010, v. 50, n. 4, p. 311, doi. 10.1002/jobm.200900249

By:

Maruyama, Yukie;
Ochiai, Akihito;
Itoh, Takatumi;
Mikàmi, Bunzo;
Hashimoto, Wataru;
Murata, Kousaku

Publication type:

Article

Evolutionary alterations in gene expression and enzymatic activities of gibberellin 3-oxidase 1 in Oryza.

Published in:

Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03008-5

By:

Kawai, Kyosuke;
Takehara, Sayaka;
Kashio, Toru;
Morii, Minami;
Sugihara, Akihiko;
Yoshimura, Hisako;
Ito, Aya;
Hattori, Masako;
Toda, Yosuke;
Kojima, Mikiko;
Takebayashi, Yumiko;
Furuumi, Hiroyasu;
Nonomura, Ken-ichi;
Mikami, Bunzo;
Akagi, Takashi;
Sakakibara, Hitoshi;
Kitano, Hidemi;
Matsuoka, Makoto;
Ueguchi-Tanaka, Miyako

Publication type:

Article

Change in the crystal packing of soybean β-amylase mutants substituted at a few surface amino acid residues.

Published in:

Protein Engineering, 2003, v. 16, n. 11, p. 809, doi. 10.1093/protein/gzg109

By:

You-Na Kang;
Motoyasu Adachi;
Bunzo Mikami;
Shigeru Utsumi

Publication type:

Article

The first crystal structure of crustacean ferritin that is a hybrid type of H and L ferritin.

Published in:

Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 11, p. 1955, doi. 10.1002/pro.3495

By:

Masuda, Taro;
Zang, Jiachen;
Zhao, Guanghua;
Mikami, Bunzo

Publication type:

Article

The extension peptide of plant ferritin from sea lettuce contributes to shell stability and surface hydrophobicity.

Published in:

Protein Science: A Publication of the Protein Society, 2012, v. 21, n. 6, p. 786, doi. 10.1002/pro.2061

By:

Masuda, Taro;
Morimoto, Shin-Ichiro;
Mikami, Bunzo;
Toyohara, Haruhiko

Publication type:

Article

Structural differences between the closely related RNA helicases, UAP56 and URH49, fashion distinct functional apo-complexes.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-023-44217-8

By:

Fujita, Ken-ichi;
Ito, Misa;
Irie, Midori;
Harada, Kotaro;
Fujiwara, Naoko;
Ikeda, Yuya;
Yoshioka, Hanae;
Yamazaki, Tomohiro;
Kojima, Masaki;
Mikami, Bunzo;
Mayeda, Akila;
Masuda, Seiji

Publication type:

Article

microenvironment surrounding FAD mediates its conversion to 8-formyl-FAD in Aspergillus oryzae RIB40 formate oxidase.

Published in:

Journal of Biochemistry, 2019, v. 166, n. 1, p. 67, doi. 10.1093/jb/mvz009

By:

Doubayashi, Daiju;
Oki, Masaya;
Mikami, Bunzo;
Uchida, Hiroyuki

Publication type:

Article

Two Crystal Structures of Lysyl-tRNA Synthetase from Bacillus stearothermophilus in Complex with Lysyladenylate-Like Compounds: Insights into the Irreversible Formation of the Enzyme-Bound Adenylate of l-Lysine Hydroxamate.

Published in:

Journal of Biochemistry, 2009, v. 145, n. 5, p. 555, doi. 10.1093/jb/mvp014

By:

Sakurama, Haruko;
Takita, Teisuke;
Mikami, Bunzo;
Itoh, Takafumi;
Yasukawa, Kiyoshi;
Inouye, Kuniyo

Publication type:

Article

Structural determinants in bacterial 2-keto-3-deoxy-D-gluconate dehydrogenase KduD for dual-coenzyme specificity.

Published in:

Proteins, 2016, v. 84, n. 7, p. 934, doi. 10.1002/prot.25042

By:

Takase, Ryuichi;
Maruyama, Yukie;
Oiki, Sayoko;
Mikami, Bunzo;
Murata, Kousaku;
Hashimoto, Wataru

Publication type:

Article

Crystal structure of UDP- N-acetylglucosamine enolpyruvyl transferase from Haemophilus influenzae in complex with UDP- N-acetylglucosamine and fosfomycin.

Published in:

Proteins, 2008, v. 71, n. 2, p. 1032, doi. 10.1002/prot.21959

By:

Yoon, Hye-Jin;
Lee, Sang Jae;
Mikami, Bunzo;
Park, Hyun-Ju;
Yoo, Jakyung;
Suh, Se Won

Publication type:

Article

The role of calcium binding to the EF-hand-like motif in bacterial solute-binding protein for alginate import.

Published in:

Bioscience, Biotechnology & Biochemistry, 2021, v. 85, n. 12, p. 2410, doi. 10.1093/bbb/zbab170

By:

Kenji Okumura;
Yukie Maruyama;
Ryuichi Takase;
Bunzo Mikami;
Kousaku Murata;
Wataru Hashimoto

Publication type:

Article

Insight into the mechanism of thermostabilization of GH10 xylanase from Bacillus sp. strain TAR-1 by the mutation of S92 to E.

Published in:

Bioscience, Biotechnology & Biochemistry, 2021, v. 85, n. 2, p. 386, doi. 10.1093/bbb/zbaa003

By:

Suzuki, Manami;
Takita, Teisuke;
Kuwata, Kohei;
Nakatani, Kota;
Li, Tongyang;
Katano, Yuta;
Kojima, Kenji;
Mizutani, Kimihiko;
Mikami, Bunzo;
Yatsunami, Rie;
Nakamura, Satoshi;
Yasukawa, Kiyoshi

Publication type:

Article

Substrate recognition by bacterial solute-binding protein is responsible for import of extracellular hyaluronan and chondroitin sulfate from the animal host.

Published in:

Bioscience, Biotechnology & Biochemistry, 2019, v. 83, n. 10, p. 1946, doi. 10.1080/09168451.2019.1630250

By:

Oiki, Sayoko;
Sato, Masahiro;
Mikami, Bunzo;
Murata, Kousaku;
Hashimoto, Wataru

Publication type:

Article

Crystal structure of class III chitinase from pomegranate provides the insight into its metal storage capacity.

Published in:

Bioscience, Biotechnology & Biochemistry, 2015, v. 79, n. 1, p. 45, doi. 10.1080/09168451.2014.962475

By:

Taro Masuda;
Guanghua Zhao;
Bunzo Mikami

Publication type:

Article

Formate Oxidase, an Enzyme of the Glucose-Methanol-Choline Oxidoreductase Family, Has a His-Arg Pair and 8-Formyl-FAD at the Catalytic Site.

Published in:

Bioscience, Biotechnology & Biochemistry, 2011, v. 75, n. 9, p. 1662, doi. 10.1271/bbb.110153

By:

Doubayashi, Daiju;
Ootake, Takumi;
Maeda, Yosifumi;
Oki, Masaya;
Tokunaga, Yuji;
Sakurai, Akihiko;
Nagaosa, Yukio;
Mikami, Bunzo;
Uchida, Hiroyuki

Publication type:

Article

The Development of Transgenic Crops to Improve Human Health by Advanced Utilization of Seed Storage Proteins.

Published in:

Bioscience, Biotechnology & Biochemistry, 2011, v. 75, n. 5, p. 823, doi. 10.1271/bbb.100924

By:

Maruyama, Nobuyuki;
Mikami, Bunzo;
Utsumi, Shigeru

Publication type:

Article

The Crystal Structure of SDR-Type Pyridoxal 4-Dehydrogenase of Mesorhizobium loti.

Published in:

Bioscience, Biotechnology & Biochemistry, 2011, v. 75, n. 2, p. 388, doi. 10.1271/bbb.100748

By:

Huy Nhat Chu;
Kobayashi, Jun;
Mikami, Bunzo;
Yagi, Toshiharu

Publication type:

Article

Soybean Basic 7S Globulin: Subunit Heterogeneity and Molecular Evolution.

Published in:

Bioscience, Biotechnology & Biochemistry, 2010, v. 74, n. 8, p. 1631, doi. 10.1271/bbb.100234

By:

Shutov, Andrei D.;
Prak, Krisna;
Fukuda, Takako;
Rudakov, Sergei V.;
Rudakova, Angela S.;
Tandang-Silvas, Mary Rose;
Fujiwara, Keigo;
Mikami, Bunzo;
Utsumi, Shigeru;
Maruyama, Nobuyuki

Publication type:

Article

Structural and Functional Characterization of Recombinant Human Serum Transferrin Secreted from Pichia pastoris.

Published in:

Bioscience, Biotechnology & Biochemistry, 2010, v. 74, n. 2, p. 309, doi. 10.1271/bbb.90635

By:

Mizutani, Kimihiko;
Hashimoto, Kazuhiko;
Takahashi, Nobuyuki;
Hirose, Masaaki;
Aibara, Shigeo;
Mikami, Bunzo

Publication type:

Article

Crystal Structure of Cold-Active Alkaline Phosphatase from the Psychrophile Shewanella sp.

Published in:

Bioscience, Biotechnology & Biochemistry, 2010, v. 74, n. 1, p. 69, doi. 10.1271/bbb.90563

By:

Tsuruta, Hiroki;
Mikami, Bunzo;
Higashi, Tetsuo;
Aizono, Yasuo

Publication type:

Article

Preliminary X-ray analysis of the binding domain of the soybean vacuolar sorting receptor complexed with a sorting determinant of a seed storage protein.

Published in:

Acta Crystallographica: Section F, Structural Biology Communications, 2015, v. 71, n. 2, p. 132, doi. 10.1107/S2053230X14027484

By:

Maruyama, Nobuyuki;
Goshi, Tomohiro;
Sugiyama, Shigeru;
Niiyama, Mayumi;
Adachi, Hiroaki;
Takano, Kazufumi;
Murakami, Satoshi;
Inoue, Tsuyoshi;
Mori, Yusuke;
Matsumura, Hiroyoshi;
Mikami, Bunzo

Publication type:

Article

Structure of 4-pyridoxolactonase from Mesorhizobium loti.

Published in:

Acta Crystallographica: Section F, Structural Biology Communications, 2014, v. 70, n. 4, p. 424, doi. 10.1107/S2053230X14003926

By:

Kobayashi, Jun;
Yoshikane, Yu;
Yagi, Toshiharu;
Baba, Seiki;
Mizutani, Kimihiko;
Takahashi, Nobuyuki;
Mikami, Bunzo

Publication type:

Article

Recognition mechanism of non-peptide antigens by human γδ T cells.

Published in:

International Immunology, 2003, v. 15, n. 11, p. 1301, doi. 10.1093/intimm/dxg129

By:

Seiji Yamashita;
Yoshimasa Tanaka;
Masashi Harazaki;
Bunzo Mikami;
Nagahiro Minato

Publication type:

Article

Crystal structure of the N-myristoylated lipopeptide-bound MHC class I complex.

Published in:

Nature Communications, 2016, v. 7, n. 1, p. 10356, doi. 10.1038/ncomms10356

By:

Morita, Daisuke;
Yamamoto, Yukie;
Mizutani, Tatsuaki;
Ishikawa, Takeshi;
Suzuki, Juri;
Igarashi, Tatsuhiko;
Mori, Naoki;
Shiina, Takashi;
Inoko, Hidetoshi;
Fujita, Hiroaki;
Iwai, Kazuhiro;
Tanaka, Yoshimasa;
Mikami, Bunzo;
Sugita, Masahiko

Publication type:

Article

Crystal structure of a putative oligopeptide-binding periplasmic protein from a hyperthermophile.

Published in:

Extremophiles, 2016, v. 20, n. 5, p. 723, doi. 10.1007/s00792-016-0861-7

By:

Yoon, Hye-Jin;
Kim, Hee;
Mikami, Bunzo;
Yu, Yeon;
Lee, Hyung

Publication type:

Article

X-ray crystal structure analysis of magnetically oriented microcrystals of lysozyme at 1.8 Å resolution.

Published in:

Journal of Applied Crystallography, 2016, v. 49, n. 2, p. 457, doi. 10.1107/S1600576716001357

By:

Tsukui, Shu;
Kimura, Fumiko;
Garman, Elspeth F.;
Baba, Seiki;
Mizuno, Nobuhiro;
Mikami, Bunzo;
Kimura, Tsunehisa

Publication type:

Article

Superchannel of Bacteria: Biological Significance and New Horizons.

Published in:

Bioscience, Biotechnology & Biochemistry, 2008, v. 72, n. 2, p. 265, doi. 10.1271/bbb.70635

By:

Murata, Kousaku;
Kawai, Shigeyuki;
Mikami, Bunzo;
Hashimoto, Wataru

Publication type:

Article

Structure and Function of Bacterial Super-Biosystem Responsible for Import and Depolymerization of Macromolecules.

Published in:

Bioscience, Biotechnology & Biochemistry, 2005, v. 69, n. 4, p. 673, doi. 10.1271/bbb.69.673

By:

Hashimoto, Wataru;
Momma, Keiko;
Maruyama, Yukie;
Yamasaki, Masayuki;
Mikami, Bunzo;
Murata, Kousaku

Publication type:

Article

Anthriscus sylvestris Deoxypodophyllotoxin Synthase Involved in the Podophyllotoxin Biosynthesis.

Published in:

Plant & Cell Physiology, 2023, v. 64, n. 12, p. 1436, doi. 10.1093/pcp/pcad103

By:

Kobayashi, Keisuke;
Yamamura, Masaomi;
Mikami, Bunzo;
Shiraishi, Akira;
Kumatani, Masato;
Satake, Honoo;
Ono, Eiichiro;
Umezawa, Toshiaki

Publication type:

Article

Bacterial inducible expression of plant cell wall-binding protein YesO through conflict between Glycine max and saprophytic Bacillus subtilis.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-75359-0

By:

Sugiura, Haruka;
Nagase, Ayumi;
Oiki, Sayoko;
Mikami, Bunzo;
Watanabe, Daisuke;
Hashimoto, Wataru

Publication type:

Article