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PEACOCK: a machine learning approach to assess the validity of cell type-specific enhancer-gene regulatory relationships.
- Published in:
- NPJ Systems Biology & Applications, 2023, v. 9, n. 1, p. 1, doi. 10.1038/s41540-023-00270-z
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- Article
InterPro in 2022.
- Published in:
- Nucleic Acids Research, 2023, v. 51, n. D1, p. D418, doi. 10.1093/nar/gkac993
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- Article
Annotation Query (AnnoQ): an integrated and interactive platform for large-scale genetic variant annotation.
- Published in:
- Nucleic Acids Research, 2022, v. 50, n. W1, p. W57, doi. 10.1093/nar/gkac418
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- Article
PANTHER: Making genome‐scale phylogenetics accessible to all.
- Published in:
- Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 8, doi. 10.1002/pro.4218
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- Article
Reactome and the Gene Ontology: digital convergence of data resources.
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- Bioinformatics, 2021, v. 37, n. 19, p. 3343, doi. 10.1093/bioinformatics/btab325
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- Article
Bayesian parameter estimation for automatic annotation of gene functions using observational data and phylogenetic trees.
- Published in:
- PLoS Computational Biology, 2021, v. 17, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007948
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- Article
The InterPro protein families and domains database: 20 years on.
- Published in:
- Nucleic Acids Research, 2021, v. 49, n. D1, p. D344, doi. 10.1093/nar/gkaa977
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- Article
PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API.
- Published in:
- Nucleic Acids Research, 2021, v. 49, n. D1, p. D394, doi. 10.1093/nar/gkaa1106
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- Article
PEREGRINE: A genome-wide prediction of enhancer to gene relationships supported by experimental evidence.
- Published in:
- PLoS ONE, 2020, v. 15, n. 12, p. 1, doi. 10.1371/journal.pone.0243791
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- Article
PhyloGenes: An online phylogenetics and functional genomics resource for plant gene function inference.
- Published in:
- Plant Direct, 2020, v. 4, n. 12, p. 1, doi. 10.1002/pld3.293
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- Article
Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0.
- Published in:
- Journal of Integrative Bioinformatics, 2019, v. 16, n. 2, p. 1, doi. 10.1515/jib-2019-0022
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- Publication type:
- Article
Protocol Update for large-scale genome and gene function analysis with the PANTHER classification system (v.14.0).
- Published in:
- Nature Protocols, 2019, v. 14, n. 3, p. 703, doi. 10.1038/s41596-019-0128-8
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- Publication type:
- Article
InterPro in 2019: improving coverage, classification and access to protein sequence annotations.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. D1, p. D351, doi. 10.1093/nar/gky1100
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- Publication type:
- Article
PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. D1, p. D419, doi. 10.1093/nar/gky1038
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- Article
Correction to: Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE).
- Published in:
- 2018
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- Correction Notice
PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. D1, p. D183, doi. 10.1093/nar/gkw1138
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- Publication type:
- Article
InterPro in 2017--beyond protein family and domain annotations.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. D1, p. D190, doi. 10.1093/nar/gkw1107
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- Publication type:
- Article
PANTHER version 10: expanded protein families and functions, and analysis tools.
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- Nucleic Acids Research, 2016, v. 44, n. 1, p. D336, doi. 10.1093/nar/gkv1194
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- Publication type:
- Article
Large-scale inference of gene function through phylogenetic annotation of Gene Ontology terms: case study of the apoptosis and autophagy cellular processes.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw155
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- Publication type:
- Article
Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE).
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- Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1285, doi. 10.4056/sigs.5279417
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- Publication type:
- Article
PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. D1, p. D677, doi. 10.1093/nar/gkt1203
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- Publication type:
- Article
PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees.
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- Nucleic Acids Research, 2013, v. 41, p. D377, doi. 10.1093/nar/gks1118
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- Article
Software support for SBGN maps: SBGN-ML and LibSBGN.
- Published in:
- Bioinformatics, 2012, v. 28, n. 15, p. 2016, doi. 10.1093/bioinformatics/bts270
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- Publication type:
- Article
Corrigendum: The BioPAX community standard for pathway data sharing.
- Published in:
- 2012
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- Erratum
BioPAX support in CellDesigner.
- Published in:
- Bioinformatics, 2011, v. 27, n. 24, p. 3437, doi. 10.1093/bioinformatics/btr586
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- Article
The BioPAX community standard for pathway data sharing.
- Published in:
- 2010
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- Publication type:
- Correction notice
The BioPAX community standard for pathway data sharing.
- Published in:
- Nature Biotechnology, 2010, v. 28, n. 9, p. 935, doi. 10.1038/nbt.1666
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- Publication type:
- Article
PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium.
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- Nucleic Acids Research, 2010, v. 38, p. D204, doi. 10.1093/nar/gkp1019
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- Publication type:
- Article
Erratum: The Systems Biology Graphical Notation.
- Published in:
- 2009
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- Publication type:
- Correction notice
Dopamine Genes and Nicotine Dependence in Treatment-Seeking and Community Smokers.
- Published in:
- Neuropsychopharmacology, 2009, v. 34, n. 10, p. 2252, doi. 10.1038/npp.2009.52
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- Publication type:
- Article
The Systems Biology Graphical Notation.
- Published in:
- Nature Biotechnology, 2009, v. 27, n. 8, p. 735, doi. 10.1038/nbt.1558
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- Article
PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways.
- Published in:
- Nucleic Acids Research, 2007, v. 35, p. d247
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- Article
The PANTHER database of protein families, subfamilies, functions and pathways.
- Published in:
- Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d284
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- Article
PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification.
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- Nucleic Acids Research, 2003, v. 31, n. 1, p. 334, doi. 10.1093/nar/gkg115
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- Publication type:
- Article
Identification and localization of Ca<sup>2+</sup>-activated K<sup>+</sup> channels in rat sciatic nerve.
- Published in:
- Glia, 1999, v. 26, n. 2, p. 166, doi. 10.1002/(SICI)1098-1136(199904)26:2<166::AID-GLIA7>3.0.CO;2-Q
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- Publication type:
- Article