Works by Meyer, Folker

Results: 52
    1

    Gut microbiota differences linked to weight gain and ART in people living with HIV are enterotype specific and minor compared to the large differences linked to sexual behavior.

    Published in:
    Frontiers in Cellular & Infection Microbiology, 2025, p. 1, doi. 10.3389/fcimb.2025.1568352
    By:
    • Kehrmann, Jan;
    • Dostmohammadi, Alireza;
    • Stumpf, Anna-Lena;
    • Best, Lara;
    • Consten, Leah;
    • Sievert, Hannah;
    • Maischack, Felix;
    • Sammet, Stefanie;
    • Albayrak-Rena, Sarah;
    • Doerr, Ann-Kathrin;
    • Bohlen, Katharina;
    • von Velsen, Otgonzul;
    • Kraiselburd, Ivana;
    • Karsten, Christina B.;
    • Farahpour, Farnoush;
    • Meyer, Folker;
    • Esser, Stefan;
    • Buer, Jan
    Publication type:
    Article
    2

    The Genomic Standards Consortium.

    Published in:
    PLoS Biology, 2011, v. 9, n. 6, p. 1, doi. 10.1371/journal.pbio.1001088
    By:
    • Field, Dawn;
    • Amaral-Zettler, Linda;
    • Cochrane, Guy;
    • Cole, James R.;
    • Dawyndt, Peter;
    • Garrity, George M.;
    • Gilbert, Jack;
    • Glöckner, Frank Oliver;
    • Hirschman, Lynette;
    • Karsch-Mizrachi, Ilene;
    • Klenk, Hans-Peter;
    • Knight, Rob;
    • Kottmann, Renzo;
    • Kyrpides, Nikos;
    • Meyer, Folker;
    • Gil, Inigo San;
    • Sansone, Susanna-Assunta;
    • Schriml, Lynn M.;
    • Sterk, Peter;
    • Tatusova, Tatiana
    Publication type:
    Article
    3

    Genomic Standards Consortium Projects.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 599, doi. 10.4056/sigs.5559680
    By:
    • Field, Dawn;
    • Sterk, Peter;
    • Kottmann, Renzo;
    • Smet, J.;
    • Amaral-Zettler, Linda;
    • Cochrane, Guy;
    • Cole, James;
    • Davies, Neil;
    • Dawyndt, Peter;
    • Garrity, George;
    • Gilbert, Jack;
    • Glöckner, Frank;
    • Hirschman, Lynette;
    • Klenk, Hans-Peter;
    • Knight, Rob;
    • Kyrpides, Nikos;
    • Meyer, Folker;
    • Karsch-Mizrachi, Ilene;
    • Morrison, Norman;
    • Robbins, Robert
    Publication type:
    Article
    4

    The 15th Genomic Standards Consortium meeting.

    Published in:
    Standards in Genomic Sciences, 2013, v. 8, n. 1, p. 124, doi. 10.4056/sigs.3457
    By:
    • Schriml, Lynn;
    • Mizrachi, Ilene;
    • Sterk, Peter;
    • Field, Dawn;
    • Hirschman, Lynette;
    • Tatusova, Tatiana;
    • Sansone, Susanna;
    • Gilbert, Jack;
    • Schindel, David;
    • Davies, Neil;
    • Meyer, Chris;
    • Meyer, Folker;
    • Garrity, George;
    • Proctor, Lita;
    • Medema, M.;
    • Lan, Yemin;
    • Klindworth, Anna;
    • Glöckner, Frank;
    • Korves, Tonia;
    • Gonzalez, Antonia
    Publication type:
    Article
    5
    6
    7

    The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation.

    Published in:
    Nucleic Acids Research, 2007, v. 35, p. d347, doi. 10.1093/nar/gkl947
    By:
    • McNeil, Leslie Klis;
    • Reich, Claudia;
    • Aziz, Ramy K.;
    • Bartels, Daniela;
    • Cohoon, Matthew;
    • Disz, Terry;
    • Edwards, Robert A.;
    • Gerdes, Svetlana;
    • Hwang, Kaitlyn;
    • Kubal, Michael;
    • Margaryan, Gohar Rem;
    • Meyer, Folker;
    • Mihalo, William;
    • Olsen, Gary J.;
    • Olson, Robert;
    • Osterman, Andrei;
    • Paarmann, Daniel;
    • Paczian, Tobias;
    • Parrello, Bruce;
    • Pusch, Gordon D.
    Publication type:
    Article
    8

    GenDB—an open source genome annotation system for prokaryote genomes.

    Published in:
    Nucleic Acids Research, 2003, v. 31, n. 8, p. 2187, doi. 10.1093/nar/gkg312
    By:
    • Meyer, Folker;
    • Goesmann, Alexander;
    • McHardy, Alice C.;
    • Bartels, Daniela;
    • Bekel, Thomas;
    • Clausen, Jörn;
    • Kalinowski, Jörn;
    • Linke, Burkhard;
    • Rupp, Oliver;
    • Giegerich, Robert;
    • Pühler, Alfred
    Publication type:
    Article
    9
    10

    Identification of herbal teas and their compounds eliciting antiviral activity against SARS-CoV-2 in vitro.

    Published in:
    BMC Biology, 2022, v. 20, n. 1, p. 1, doi. 10.1186/s12915-022-01468-z
    By:
    • Le-Trilling, Vu Thuy Khanh;
    • Mennerich, Denise;
    • Schuler, Corinna;
    • Sakson, Roman;
    • Lill, Julia K.;
    • Kasarla, Siva Swapna;
    • Kopczynski, Dominik;
    • Loroch, Stefan;
    • Flores-Martinez, Yulia;
    • Katschinski, Benjamin;
    • Wohlgemuth, Kerstin;
    • Gunzer, Matthias;
    • Meyer, Folker;
    • Phapale, Prasad;
    • Dittmer, Ulf;
    • Sickmann, Albert;
    • Trilling, Mirko
    Publication type:
    Article
    11
    12
    13
    14

    A RESTful API for Accessing Microbial Community Data for MG-RAST.

    Published in:
    PLoS Computational Biology, 2015, v. 11, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004008
    By:
    • Wilke, Andreas;
    • Bischof, Jared;
    • Harrison, Travis;
    • Brettin, Tom;
    • D'Souza, Mark;
    • Gerlach, Wolfgang;
    • Matthews, Hunter;
    • Paczian, Tobias;
    • Wilkening, Jared;
    • Glass, Elizabeth M.;
    • Desai, Narayan;
    • Meyer, Folker
    Publication type:
    Article
    15
    16

    The GAAS Metagenomic Tool and Its Estimations of Viral and Microbial Average Genome Size in Four Major Biomes.

    Published in:
    PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000593
    By:
    • Angly, Florent E.;
    • Willner, Dana;
    • Prieto-Davó, Alejandra;
    • Edwards, Robert A.;
    • Schmieder, Robert;
    • Vega-Thurber, Rebecca;
    • Antonopoulos, Dionysios A.;
    • Barott, Katie;
    • Cottrell, Matthew T.;
    • Desnues, Christelle;
    • Dinsdale, Elizabeth A.;
    • Furlan, Mike;
    • Haynes, Matthew;
    • Henn, Matthew R.;
    • Yongfei Hu;
    • Kirchman, David L.;
    • McDole, Tracey;
    • McPherson, John D.;
    • Meyer, Folker;
    • Miller, R. Michael
    Publication type:
    Article
    17
    18
    19

    Structure, fluctuation and magnitude of a natural grassland soil metagenome.

    Published in:
    ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 9, p. 1677, doi. 10.1038/ismej.2011.197
    By:
    • Delmont, Tom O;
    • Prestat, Emmanuel;
    • Keegan, Kevin P;
    • Faubladier, Michael;
    • Robe, Patrick;
    • Clark, Ian M;
    • Pelletier, Eric;
    • Hirsch, Penny R;
    • Meyer, Folker;
    • Gilbert, Jack A;
    • Le Paslier, Denis;
    • Simonet, Pascal;
    • Vogel, Timothy M
    Publication type:
    Article
    20
    21

    Metadata harmonization–Standards are the key for a better usage of omics data for integrative microbiome analysis.

    Published in:
    Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00425-1
    By:
    • Cernava, Tomislav;
    • Rybakova, Daria;
    • Buscot, François;
    • Clavel, Thomas;
    • McHardy, Alice Carolyn;
    • Meyer, Fernando;
    • Meyer, Folker;
    • Overmann, Jörg;
    • Stecher, Bärbel;
    • Sessitsch, Angela;
    • Schloter, Michael;
    • Berg, Gabriele;
    • The MicrobiomeSupport Team;
    • Arruda, Paulo;
    • Bartzanas, Thomas;
    • Kostic, Tanja;
    • Brennan, Paula Iara;
    • Biazotti, Bárbara Bort;
    • Champomier-Verges, Marie-Christine;
    • Charles, Trevor
    Publication type:
    Article
    22
    23

    UnCoVar: a reproducible and scalable workflow for transparent and robust virus variant calling and lineage assignment using SARS-CoV-2 as an example.

    Published in:
    BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-024-10539-0
    By:
    • Thomas, Alexander;
    • Battenfeld, Thomas;
    • Kraiselburd, Ivana;
    • Anastasiou, Olympia;
    • Dittmer, Ulf;
    • Dörr, Ann-Kathrin;
    • Dörr, Adrian;
    • Elsner, Carina;
    • Gosch, Jule;
    • Le-Trilling, Vu Thuy Khanh;
    • Magin, Simon;
    • Scholtysik, René;
    • Yilmaz, Pelin;
    • Trilling, Mirko;
    • Schöler, Lara;
    • Köster, Johannes;
    • Meyer, Folker
    Publication type:
    Article
    24
    25
    26
    27

    COVID-19 pandemic reveals the peril of ignoring metadata standards.

    Published in:
    Scientific Data, 2020, v. 7, n. 1, p. 1, doi. 10.1038/s41597-020-0524-5
    By:
    • Schriml, Lynn M.;
    • Chuvochina, Maria;
    • Davies, Neil;
    • Eloe-Fadrosh, Emiley A.;
    • Finn, Robert D.;
    • Hugenholtz, Philip;
    • Hunter, Christopher I.;
    • Hurwitz, Bonnie L.;
    • Kyrpides, Nikos C.;
    • Meyer, Folker;
    • Mizrachi, Ilene Karsch;
    • Sansone, Susanna-Assunta;
    • Sutton, Granger;
    • Tighe, Scott;
    • Walls, Ramona
    Publication type:
    Article
    28

    Spatial scale drives patterns in soil bacterial diversity.

    Published in:
    Environmental Microbiology, 2016, v. 18, n. 6, p. 2039, doi. 10.1111/1462-2920.13231
    By:
    • O'Brien, Sarah L.;
    • Gibbons, Sean M.;
    • Owens, Sarah M.;
    • Hampton ‐ Marcell, Jarrad;
    • Johnston, Eric R.;
    • Jastrow, Julie D.;
    • Gilbert, Jack A.;
    • Meyer, Folker;
    • Antonopoulos, Dionysios A.
    Publication type:
    Article
    29

    The complete genome sequence for putative H<sub>2</sub>- and S-oxidizer C andidatus Sulfuricurvum sp., assembled de novo from an aquifer-derived metagenome.

    Published in:
    Environmental Microbiology, 2014, v. 16, n. 11, p. 3443, doi. 10.1111/1462-2920.12453
    By:
    • Handley, Kim M.;
    • Bartels, Daniela;
    • O'Loughlin, Edward J.;
    • Williams, Kenneth H.;
    • Trimble, William L.;
    • Skinner, Kelly;
    • Gilbert, Jack A.;
    • Desai, Narayan;
    • Glass, Elizabeth M.;
    • Paczian, Tobias;
    • Wilke, Andreas;
    • Antonopoulos, Dionysios;
    • Kemner, Kenneth M.;
    • Meyer, Folker
    Publication type:
    Article
    30

    Whole genome analysis of the marine Bacteroidetes‘ Gramella forsetii’ reveals adaptations to degradation of polymeric organic matter.

    Published in:
    Environmental Microbiology, 2006, v. 8, n. 12, p. 2201, doi. 10.1111/j.1462-2920.2006.01152.x
    By:
    • Bauer, Margarete;
    • Kube, Michael;
    • Teeling, Hanno;
    • Richter, Michael;
    • Lombardot, Thierry;
    • Allers, Elke;
    • Würdemann, Chris A.;
    • Quast, Christian;
    • Kuhl, Heiner;
    • Knaust, Florian;
    • Woebken, Dagmar;
    • Bischof, Kerstin;
    • Mussmann, Marc;
    • Choudhuri, Jomuna V.;
    • Meyer, Folker;
    • Reinhardt, Richard;
    • Amann, Rudolf I.;
    • Glöckner, Frank Oliver
    Publication type:
    Article
    31

    Unlocking the potential of metagenomics through replicated experimental design.

    Published in:
    Nature Biotechnology, 2012, v. 30, n. 6, p. 513, doi. 10.1038/nbt.2235
    By:
    • Knight, Rob;
    • Jansson, Janet;
    • Field, Dawn;
    • Fierer, Noah;
    • Desai, Narayan;
    • Fuhrman, Jed A;
    • Hugenholtz, Phil;
    • van der Lelie, Daniel;
    • Meyer, Folker;
    • Stevens, Rick;
    • Bailey, Mark J;
    • Gordon, Jeffrey I;
    • Kowalchuk, George A;
    • Gilbert, Jack A
    Publication type:
    Article
    32
    33
    34
    35
    36

    The MG-RAST metagenomics database and portal in 2015.

    Published in:
    Nucleic Acids Research, 2016, v. 44, p. D590, doi. 10.1093/nar/gkv1322
    By:
    • Wilke, Andreas;
    • Bischof, Jared;
    • Gerlach, Wolfgang;
    • Glass, Elizabeth;
    • Harrison, Travis;
    • Keegan, Kevin P.;
    • Paczian, Tobias;
    • Trimble, William L.;
    • Bagchi, Saurabh;
    • Grama, Ananth;
    • Chaterji, Somali;
    • Meyer, Folker
    Publication type:
    Article
    37
    38

    The metagenomic data life-cycle: standards and best practices.

    Published in:
    GigaScience, 2017, v. 6, n. 8, p. 1, doi. 10.1093/gigascience/gix047
    By:
    • Hoopen, Petra ten;
    • Finn, Robert D.;
    • Bongo, Lars Ailo;
    • Corre, Erwan;
    • Fosso, Bruno;
    • Meyer, Folker;
    • Mitchell, Alex;
    • Pelletier, Eric;
    • Pesole, Graziano;
    • Santamaria, Monica;
    • Willassen, Nils Peder;
    • Cochrane, Guy
    Publication type:
    Article
    39

    Immune responses in COVID-19 patients during breakthrough infection with SARS-CoV-2 variants Delta, Omicron-BA.1 and Omicron-BA.5.

    Published in:
    Frontiers in Immunology, 2023, p. 1, doi. 10.3389/fimmu.2023.1150667
    By:
    • Bormann, Maren;
    • Brochhagen, Leonie;
    • Alt, Mira;
    • Otte, Mona;
    • Thümmler, Laura;
    • van de Sand, Lukas;
    • Kraiselburd, Ivana;
    • Thomas, Alexander;
    • Gosch, Jule;
    • Braß, Peer;
    • Ciesek, Sandra;
    • Widera, Marek;
    • Dolff, Sebastian;
    • Dittmer, Ulf;
    • Witzke, Oliver;
    • Meyer, Folker;
    • Lindemann, Monika;
    • Schönfeld, Andreas;
    • Rohn, Hana;
    • Krawczyk, Adalbert
    Publication type:
    Article
    40
    41
    42

    The United States of America and Scientific Research.

    Published in:
    PLoS ONE, 2010, v. 5, n. 8, p. 1, doi. 10.1371/journal.pone.0012203
    By:
    • Hather, Gregory J.;
    • Haynes, Winston;
    • Higdon, Roger;
    • Kolker, Natali;
    • Stewart, Elizabeth A.;
    • Arzberger, Peter;
    • Chain, Patrick;
    • Field, Dawn;
    • Franza, B. Robert;
    • Lin, Biaoyang;
    • Meyer, Folker;
    • Ozdemir, Vural;
    • Smith, Charles V.;
    • van Belle, Gerald;
    • Wooley, John;
    • Kolker, Eugene
    Publication type:
    Article
    43
    44
    45
    46

    Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis.

    Published in:
    Nature Biotechnology, 2006, v. 24, n. 8, p. 997, doi. 10.1038/nbt1232
    By:
    • Schneiker, Susanne;
    • dos Santos, Vítor A. P. Martins;
    • Bartels, Daniela;
    • Bekel, Thomas;
    • Brecht, Martina;
    • Buhrmester, Jens;
    • Chernikova, Tatyana N.;
    • Denaro, Renata;
    • Ferrer, Manuel;
    • Gertler, Christoph;
    • Goesmann, Alexander;
    • Golyshina, Olga V.;
    • Kaminski, Filip;
    • Khachane, Amit N.;
    • Siegmund Lang;
    • Linke, Burkhard;
    • McHardy, Alice C.;
    • Meyer, Folker;
    • Nechitaylo, Taras;
    • Pühler, Alfred
    Publication type:
    Article
    47
    48

    The RAST Server: Rapid Annotations using Subsystems Technology.

    Published in:
    BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-75
    By:
    • Aziz, Ramy K.;
    • Bartels, Daniela;
    • Best, Aaron A.;
    • DeJongh, Matthew;
    • Disz, Terrence;
    • Edwards, Robert A.;
    • Formsma, Kevin;
    • Gerdes, Svetlana;
    • Glass, Elizabeth M.;
    • Kuba, Michael;
    • Meyer, Folker;
    • Olsen, Gary J.;
    • Olson, Robert;
    • Osterman, Andrei L.;
    • Overbeek, Ross A.;
    • McNeil, Leslie K.;
    • Paarmann, Daniel;
    • Paczian, Tobias;
    • Parrello, Bruce;
    • Pusch, Gordon D.
    Publication type:
    Article
    49
    50