Works by Meusemann, Karen

Results: 40

Positive and relaxed selection associated with flight evolution and loss in insect transcriptomse.

Published in:

GigaScience, 2017, v. 6, n. 10, p. 1, doi. 10.1093/gigascience/gix073

By:

Mitterboeck, T. Fatima;
Shanlin Liu;
Adamowicz, Sarah J.;
Jinzhong Fu;
Rui Zhang;
Wenhui Song;
Meusemann, Karen;
Xin Zhou

Publication type:

Article

Termite Taxonomy, Challenges and Prospects: West Africa, A Case Example.

Published in:

Insects (2075-4450), 2019, v. 10, n. 1, p. 32, doi. 10.3390/insects10010032

By:

Korb, Judith;
Kasseney, Boris D.;
Cakpo, Yvonne Tété;
Casalla Daza, Robin H.;
Gbenyedji, Jean Norbert K. B.;
Ilboudo, Mayouré Edith;
Josens, Guy;
Koné, N'golo Abdoulaye;
Meusemann, Karen;
Ndiaye, Abdoulaye B.;
Okweche, Simon Idoko;
Poulsen, Michael;
Roisin, Yves;
Sankara, Fernand

Publication type:

Article

Parametric and non-parametric masking of randomness in sequence alignments can be improved and leads to better resolved trees.

Published in:

Frontiers in Zoology, 2010, v. 7, p. 10, doi. 10.1186/1742-9994-7-10

By:

Kück, Patrick;
Meusemann, Karen;
Dambach, Johannes;
Thormann, Birthe;
von Reumont, Björn M.;
Wägele, Johann W.;
Misof, Bernhard

Publication type:

Article

Phylogenomic analysis of Apoidea sheds new light on the sister group of bees.

Published in:

BMC Evolutionary Biology, 2018, v. 18, n. 1, p. N.PAG, doi. 10.1186/s12862-018-1155-8

By:

Ohl, Michael;
Sann, Manuela;
Mayer, Christoph;
Podsiadlowski, Lars;
Misof, Bernhard;
Niehuis, Oliver;
Meusemann, Karen;
Peters, Ralph S.;
Kozlov, Alexey;
Bank, Sarah;
Bleidorn, Christoph

Publication type:

Article

Analysis of RNA-Seq, DNA Target Enrichment, and Sanger Nucleotide Sequence Data Resolves Deep Splits in the Phylogeny of Cuckoo Wasps (Hymenoptera: Chrysididae).

Published in:

Insect Systematics & Diversity, 2021, v. 5, n. 1, p. 1, doi. 10.1093/isd/ixaa018

By:

Pauli, Thomas;
Meusemann, Karen;
Kukowka, Sandra;
Sann, Manuela;
Donath, Alexander;
Mayer, Christoph;
Oeyen, Jan Philip;
Ballesteros, Yolanda;
Berg, Alexander;
van den Berghe, Eric;
Escalona, Hermes E;
Guglielmino, Adalgisa;
Niehuis, Manfred;
Olmi, Massimo;
Podsiadlowski, Lars;
Polidori, Carlo;
Rond, Jeroen de;
Rosa, Paolo;
Schmitt, Thomas;
Strumia, Franco

Publication type:

Article

Potential Contribution of Ancient Introgression to the Evolution of a Derived Reproductive Strategy in Ricefishes.

Published in:

Genome Biology & Evolution, 2023, v. 15, n. 8, p. 1, doi. 10.1093/gbe/evad138

By:

Flury, Jana M;
Meusemann, Karen;
Martin, Sebastian;
Hilgers, Leon;
Spanke, Tobias;
Böhne, Astrid;
Herder, Fabian;
Mokodongan, Daniel F;
Altmüller, Janine;
Wowor, Daisy;
Misof, Bernhard;
Nolte, Arne W;
Schwarzer, Julia

Publication type:

Article

Transcriptomic Signatures of Ageing Vary in Solitary and Social Forms of an Orchid Bee.

Published in:

Genome Biology & Evolution, 2021, v. 13, n. 6, p. 1, doi. 10.1093/gbe/evab075

By:

Séguret, Alice;
Stolle, Eckart;
Fleites-Ayil, Fernando A;
Quezada-Euán, José Javier G;
Hartfelder, Klaus;
Meusemann, Karen;
Harrison, Mark C;
Soro, Antonella;
Paxton, Robert J

Publication type:

Article

Signatures of DNA Methylation across Insects Suggest Reduced DNA Methylation Levels in Holometabola.

Published in:

Genome Biology & Evolution, 2018, v. 10, n. 4, p. 1185, doi. 10.1093/gbe/evy066

By:

Provataris, Panagiotis;
Meusemann, Karen;
Niehuis, Oliver;
Grath, Sonja;
Misof, Bernhard

Publication type:

Article

Phylogenetic Origin and Diversification of RNAi Pathway Genes in Insects.

Published in:

Genome Biology & Evolution, 2016, v. 8, n. 12, p. 3784, doi. 10.1093/gbe/evw281

By:

Dowling, Daniel;
Pauli, Thomas;
Donath, Alexander;
Meusemann, Karen;
Podsiadlowski, Lars;
Petersen, Malte;
Peters, Ralph S.;
Mayer, Christoph;
Shanlin Liu;
Xin Zhou;
Misof, Bernhard;
Niehuis, Oliver

Publication type:

Article

Evolution of neuropeptides in non-pterygote hexapods.

Published in:

BMC Evolutionary Biology, 2016, v. 16, p. 1, doi. 10.1186/s12862-016-0621-4

By:

Derst, Christian;
Dircksen, Heinrich;
Meusemann, Karen;
Xin Zhou;
Shanlin Liu;
Predel, Reinhard

Publication type:

Article

The evolutionary history of holometabolous insects inferred from transcriptome-based phylogeny and comprehensive morphological data.

Published in:

BMC Evolutionary Biology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/1471-2148-14-52

By:

Peters, Ralph S.;
Meusemann, Karen;
Petersen, Malte;
Mayer, Christoph;
Wilbrandt, Jeanne;
Ziesmann, Tanja;
Donath, Alexander;
Kjer, Karl M.;
Aspöck, Ulrike;
Aspöck, Horst;
Aberer, Andre;
Stamatakis, Alexandros;
Friedrich, Frank;
Hünefeld, Frank;
Niehuis, Oliver;
Beutel, Rolf G.;
Misof, Bernhard

Publication type:

Article

Perianth evolution and implications for generic delimitation in the eucalypts (Myrtaceae), including the description of the new genus, Blakella.

Published in:

Journal of Systematics & Evolution, 2024, v. 62, n. 5, p. 942, doi. 10.1111/jse.13047

By:

Crisp, Michael D.;
Minh, Bui Q.;
Choi, Bokyung;
Edwards, Robert D.;
Hereward, James;
Kulheim, Carsten;
Lin, Yen Po;
Meusemann, Karen;
Thornhill, Andrew H.;
Toon, Alicia;
Cook, Lyn G.

Publication type:

Article

Phylogenomic analyses clarify the pattern of evolution of Adephaga (Coleoptera) and highlight phylogenetic artefacts due to model misspecification and excessive data trimming.

Published in:

Systematic Entomology, 2021, v. 46, n. 4, p. 991, doi. 10.1111/syen.12508

By:

Vasilikopoulos, Alexandros;
Balke, Michael;
Kukowka, Sandra;
Pflug, James M.;
Martin, Sebastian;
Meusemann, Karen;
Hendrich, Lars;
Mayer, Christoph;
Maddison, David R.;
Niehuis, Oliver;
Beutel, Rolf G.;
Misof, Bernhard

Publication type:

Article

Reanalysis of the apoid wasp phylogeny with additional taxa and sequence data confirms the placement of Ammoplanidae as sister to bees.

Published in:

Systematic Entomology, 2021, v. 46, n. 3, p. 558, doi. 10.1111/syen.12475

By:

Sann, Manuela;
Meusemann, Karen;
Niehuis, Oliver;
Escalona, Hermes E.;
Mokrousov, Mikhail;
Ohl, Michael;
Pauli, Thomas;
Schmid‐Egger, Christian

Publication type:

Article

Can comprehensive background knowledge be incorporated into substitution models to improve phylogenetic analyses? A case study on major arthropod relationships.

Published in:

BMC Evolutionary Biology, 2009, v. 9, p. 1, doi. 10.1186/1471-2148-9-119

By:

von Reumont, Björn M.;
Meusemann, Karen;
Szucsich, Nikolaus U.;
Dell'Ampio, Emiliano;
Gowri-Shankar, Vivek;
Bartel, Daniela;
Simon, Sabrina;
Letsch, Harald O.;
Stocsits, Roman R.;
Yun-xia Luan;
Wägele, Johann Wolfgang;
Pass, Günther;
Hadrys, Heike;
Misof, Bernhard

Publication type:

Article

Monophyletic blowflies revealed by phylogenomics.

Published in:

BMC Biology, 2021, v. 19, n. 1, p. 1, doi. 10.1186/s12915-021-01156-4

By:

Yan, Liping;
Pape, Thomas;
Meusemann, Karen;
Kutty, Sujatha Narayanan;
Meier, Rudolf;
Bayless, Keith M.;
Zhang, Dong

Publication type:

Article

Orthograph: a versatile tool for mapping coding nucleotide sequences to clusters of orthologous genes.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1529-8

By:

Petersen, Malte;
Meusemann, Karen;
Donath, Alexander;
Dowling, Daniel;
Shanlin Liu;
Peters, Ralph S.;
Podsiadlowski, Lars;
Vasilikopoulos, Alexandros;
Xin Zhou;
Misof, Bernhard;
Niehuis, Oliver

Publication type:

Article

BaitFisher: A Software Package for Multispecies Target DNA Enrichment Probe Design.

Published in:

Molecular Biology & Evolution, 2016, v. 33, n. 7, p. 1875, doi. 10.1093/molbev/msw056

By:

Mayer, Christoph;
Sann, Manuela;
Donath, Alexander;
Meixner, Martin;
Podsiadlowski, Lars;
Peters, Ralph S.;
Petersen, Malte;
Meusemann, Karen;
Liere, Karsten;
Wägele, Johann-Wolfgang;
Misof, Bernhard;
Bleidorn, Christoph;
Ohl, Michael;
Niehuis, Oliver

Publication type:

Article

Decisive Data Sets in Phylogenomics: Lessons from Studies on the Phylogenetic Relationships of Primarily Wingless Insects.

Published in:

Molecular Biology & Evolution, 2014, v. 31, n. 1, p. 239, doi. 10.1093/molbev/mst196

By:

Dell’Ampio, Emiliano;
Meusemann, Karen;
Szucsich, Nikolaus U.;
Peters, Ralph S.;
Meyer, Benjamin;
Borner, Janus;
Petersen, Malte;
Aberer, Andre J.;
Stamatakis, Alexandros;
Walzl, Manfred G.;
Minh, Bui Quang;
von Haeseler, Arndt;
Ebersberger, Ingo;
Pass, Günther;
Misof, Bernhard

Publication type:

Article

Pancrustacean Phylogeny in the Light of New Phylogenomic Data: Support for Remipedia as the Possible Sister Group of Hexapoda.

Published in:

Molecular Biology & Evolution, 2012, v. 29, n. 3, p. 1031, doi. 10.1093/molbev/msr270

By:

von Reumont, Bjoern M.;
Jenner, Ronald A.;
Wills, Matthew A.;
Dell’Ampio, Emiliano;
Pass, Günther;
Ebersberger, Ingo;
Meyer, Benjamin;
Koenemann, Stefan;
Iliffe, Thomas M.;
Stamatakis, Alexandros;
Niehuis, Oliver;
Meusemann, Karen;
Misof, Bernhard

Publication type:

Article

A Phylogenomic Approach to Resolve the Arthropod Tree of Life.

Published in:

Molecular Biology & Evolution, 2010, v. 27, n. 11, p. 2451, doi. 10.1093/molbev/msq130

By:

Meusemann, Karen;
von Reumont, Björn M.;
Simon, Sabrina;
Roeding, Falko;
Strauss, Sascha;
Kück, Patrick;
Ebersberger, Ingo;
Walzl, Manfred;
Pass, Günther;
Breuers, Sebastian;
Achter, Viktor;
von Haeseler, Arndt;
Burmester, Thorsten;
Hadrys, Heike;
Wägele, J. Wolfgang;
Misof, Bernhard

Publication type:

Article

Transcriptomics provides a robust framework for the relationships of the major clades of cladobranch sea slugs (Mollusca, Gastropoda, Heterobranchia), but fails to resolve the position of the enigmatic genus Embletonia.

Published in:

BMC Ecology & Evolution, 2021, v. 21, p. 1, doi. 10.1186/s12862-021-01944-0

By:

Karmeinski, Dario;
Meusemann, Karen;
Goodheart, Jessica A.;
Schroedl, Michael;
Martynov, Alexander;
Korshunova, Tatiana;
Wägele, Heike;
Donath, Alexander

Publication type:

Article

No signal of deleterious mutation accumulation in conserved gene sequences of extant asexual hexapods.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-41821-x

By:

Brandt, Alexander;
Bast, Jens;
Scheu, Stefan;
Meusemann, Karen;
Donath, Alexander;
Schütte, Kai;
Machida, Ryuichiro;
Kraaijeveld, Ken

Publication type:

Article

Correction to: An integrative phylogenomic approach to elucidate the evolutionary history and divergence times of Neuropterida (Insecta: Holometabola).

Published in:

2020

By:

Vasilikopoulos, Alexandros;
Misof, Bernhard;
Meusemann, Karen;
Lieberz, Doria;
Flouri, Tomáš;
Beutel, Rolf G.;
Niehuis, Oliver;
Wappler, Torsten;
Rust, Jes;
Peters, Ralph S.;
Donath, Alexander;
Podsiadlowski, Lars;
Mayer, Christoph;
Bartel, Daniela;
Böhm, Alexander;
Liu, Shanlin;
Kapli, Paschalia;
Greve, Carola;
Jepson, James E.;
Liu, Xingyue

Publication type:

Correction Notice

An integrative phylogenomic approach to elucidate the evolutionary history and divergence times of Neuropterida (Insecta: Holometabola).

Published in:

BMC Evolutionary Biology, 2020, v. 20, n. 1, p. 1, doi. 10.1186/s12862-020-01631-6

By:

Vasilikopoulos, Alexandros;
Misof, Bernhard;
Meusemann, Karen;
Lieberz, Doria;
Flouri, Tomáš;
Beutel, Rolf G.;
Niehuis, Oliver;
Wappler, Torsten;
Rust, Jes;
Peters, Ralph S.;
Donath, Alexander;
Podsiadlowski, Lars;
Mayer, Christoph;
Bartel, Daniela;
Böhm, Alexander;
Liu, Shanlin;
Kapli, Paschalia;
Greve, Carola;
Jepson, James E.;
Liu, Xingyue

Publication type:

Article

Beyond Drosophila: resolving the rapid radiation of schizophoran flies with phylotranscriptomics.

Published in:

BMC Biology, 2021, v. 19, n. 1, p. 1, doi. 10.1186/s12915-020-00944-8

By:

Bayless, Keith M.;
Trautwein, Michelle D.;
Meusemann, Karen;
Shin, Seunggwan;
Petersen, Malte;
Donath, Alexander;
Podsiadlowski, Lars;
Mayer, Christoph;
Niehuis, Oliver;
Peters, Ralph S.;
Meier, Rudolf;
Kutty, Sujatha Narayanan;
Liu, Shanlin;
Zhou, Xin;
Misof, Bernhard;
Yeates, David K.;
Wiegmann, Brian M.

Publication type:

Article

Identifying genetic markers for a range of phylogenetic utility–From species to family level.

Published in:

PLoS ONE, 2019, v. 14, n. 8, p. 1, doi. 10.1371/journal.pone.0218995

By:

Choi, Bokyung;
Crisp, Michael D.;
Cook, Lyn G.;
Meusemann, Karen;
Edwards, Robert D.;
Toon, Alicia;
Külheim, Carsten

Publication type:

Article

Long live the queen, the king and the commoner? Transcript expression differences between old and young in the termite Cryptotermes secundus.

Published in:

PLoS ONE, 2019, v. 14, n. 2, p. 1, doi. 10.1371/journal.pone.0210371

By:

Monroy Kuhn, José Manuel;
Meusemann, Karen;
Korb, Judith

Publication type:

Article

Analysis of the genome of the New Zealand giant collembolan (Holacanthella duospinosa) sheds light on hexapod evolution.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4197-1

By:

Chen Wu;
Jordan, Melissa D.;
Newcomb, Richard D.;
Gemmell, Neil J.;
Bank, Sarah;
Meusemann, Karen;
Dearden, Peter K.;
Duncan, Elizabeth J.;
Grosser, Sefanie;
Rutherford, Kim;
Gardner, Paul P.;
Crowhurst, Ross N.;
Steinwender, Bernd;
Tooman, Leah K.;
Stevens, Mark I.;
Buckley, Thomas R.

Publication type:

Article

Selecting informative subsets of sparse supermatrices increases the chance to find correct trees.

Published in:

BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-348

By:

Misof, Bernhard;
Meyer, Benjamin;
Reumont, Björn Marcus von;
Kück, Patrick;
Misof, Katharina;
Meusemann, Karen

Publication type:

Article

Phylogenomic analysis of Calyptratae: resolving the phylogenetic relationships within a major radiation of Diptera.

Published in:

Cladistics, 2019, v. 35, n. 6, p. 605, doi. 10.1111/cla.12375

By:

Narayanan Kutty, Sujatha;
Meusemann, Karen;
Bayless, Keith M.;
Marinho, Marco A. T.;
Pont, Adrian C.;
Zhou, Xin;
Misof, Bernhard;
Wiegmann, Brian M.;
Yeates, David;
Cerretti, Pierfilippo;
Meier, Rudolf;
Pape, Thomas

Publication type:

Article

Evolutionary ecology of beta-lactam gene clusters in animals.

Published in:

Molecular Ecology, 2017, v. 26, n. 12, p. 3217, doi. 10.1111/mec.14109

By:

Suring, Wouter;
Meusemann, Karen;
Blanke, Alexander;
Mariën, Janine;
Schol, Tim;
Agamennone, Valeria;
Faddeeva‐Vakhrusheva, Anna;
Berg, Matty P.;
Brouwer, Abraham;
Straalen, Nico M.;
Roelofs, Dick

Publication type:

Article

Disentangling the aging gene expression network of termite queens.

Published in:

BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-07649-4

By:

Monroy Kuhn, José Manuel;
Meusemann, Karen;
Korb, Judith

Publication type:

Article

Unraveling myriapod evolution: sealion, a novel quartet-based approach for evaluating phylogenetic uncertainty.

Published in:

NAR Genomics & Bioinformatics, 2025, v. 7, n. 1, p. 1, doi. 10.1093/nargab/lqaf018

By:

Kück, Patrick;
Wilkinson, Mark;
Romahn, Juliane;
Seidel, Nathan I;
Meusemann, Karen;
Wägele, Johann W

Publication type:

Article

Pitfalls of the site-concordance factor (sCF) as measure of phylogenetic branch support.

Published in:

NAR Genomics & Bioinformatics, 2022, v. 4, n. 3, p. 1, doi. 10.1093/nargab/lqac064

By:

Kück, Patrick;
Romahn, Juliane;
Meusemann, Karen

Publication type:

Article

Improved Phylogenetic Analyses Corroborate a Plausible Position of Martialis heureka in the Ant Tree of Life.

Published in:

PLoS ONE, 2011, v. 6, n. 6, p. 1, doi. 10.1371/journal.pone.0021031

By:

Kück, Patrick;
Garcia, Francisco Hita;
Misof, Bernhard;
Meusemann, Karen

Publication type:

Article

Development and evaluation of a custom bait design based on 469 single-copy protein-coding genes for exon capture of isopods (Philosciidae: Haloniscus).

Published in:

PLoS ONE, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pone.0256861

By:

Stringer, Danielle N.;
Bertozzi, Terry;
Meusemann, Karen;
Delean, Steven;
Guzik, Michelle T.;
Tierney, Simon M.;
Mayer, Christoph;
Cooper, Steven J. B.;
Javidkar, Mohammad;
Zwick, Andreas;
Austin, Andrew D.

Publication type:

Article

Transcriptomic data from panarthropods shed new light on the evolution of insulator binding proteins in insects.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3205-1

By:

Pauli, Thomas;
Vedder, Lucia;
Dowling, Daniel;
Petersen, Malte;
Meusemann, Karen;
Donath, Alexander;
Peters, Ralph S.;
Podsiadlowski, Lars;
Mayer, Christoph;
Shanlin Liu;
Xin Zhou;
Heger, Peter;
Wiehe, Thomas;
Hering, Lars;
Mayer, Georg;
Misof, Bernhard;
Niehuis, Oliver

Publication type:

Article

Phylogenetic Revision and Patterns of Host Specificity in the Fungal Subphylum Entomophthoromycotina.

Published in:

Microorganisms, 2022, v. 10, n. 2, p. N.PAG, doi. 10.3390/microorganisms10020256

By:

Möckel, Lars;
Meusemann, Karen;
Misof, Bernhard;
Schwartze, Volker U.;
De Fine Licht, Henrik H.;
Voigt, Kerstin;
Stielow, Benjamin;
de Hoog, Sybren;
Beutel, Rolf G.;
Buellesbach, Jan

Publication type:

Article

Molecular evolution of dietary shifts in ladybird beetles (Coleoptera: Coccinellidae): from fungivory to carnivory and herbivory.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02174-2

By:

Huang, Yu-Hao;
Escalona, Hermes E.;
Sun, Yi-Fei;
Zhang, Pei-Fang;
Du, Xue-Yong;
Gong, Sen-Rui;
Tang, Xue-Fei;
Liang, Yuan-Sen;
Yang, Dan;
Chen, Pei-Tao;
Yang, Huan-Ying;
Chen, Mei-Lan;
Hüttel, Bruno;
Hlinka, Ondrej;
Wang, Xingmin;
Meusemann, Karen;
Ślipiński, Adam;
Zwick, Andreas;
Waterhouse, Robert M.;
Misof, Bernhard

Publication type:

Article