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Experimental and computational analysis of the ancestry of an evolutionary young enzyme from histidine biosynthesis.
- Published in:
- Protein Science: A Publication of the Protein Society, 2023, v. 32, n. 1, p. 1, doi. 10.1002/pro.4536
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- Article
Evidence for the preferential reuse of sub‐domain motifs in primordial protein folds.
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- Proteins, 2021, v. 89, n. 9, p. 1167, doi. 10.1002/prot.26089
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- Article
Rosetta:MSF:NN: Boosting performance of multi-state computational protein design with a neural network.
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- PLoS ONE, 2021, v. 16, n. 8, p. 1, doi. 10.1371/journal.pone.0256691
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- Article
Sequence and functional differences in the ATPase domains of CHD3 and SNF2H promise potential for selective regulability and drugability.
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- FEBS Journal, 2021, v. 288, n. 13, p. 4000, doi. 10.1111/febs.15699
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- Article
Towards Photochromic Azobenzene‐Based Inhibitors for Tryptophan Synthase.
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- Chemistry - A European Journal, 2021, v. 27, n. 7, p. 2439, doi. 10.1002/chem.202004061
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- Article
Rosetta design with co-evolutionary information retains protein function.
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- PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008568
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- Article
Conserved genomic neighborhood is a strong but no perfect indicator for a direct interaction of microbial gene products.
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- BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-019-3200-z
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- Article
Light-Regulation of Tryptophan Synthase by Combining Protein Design and Enzymology.
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- International Journal of Molecular Sciences, 2019, v. 20, n. 20, p. 5106, doi. 10.3390/ijms20205106
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- Article
Prediction of quaternary structure by analysis of hot spot residues in protein‐protein interfaces: the case of anthranilate phosphoribosyltransferases.
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- Proteins, 2019, v. 87, n. 10, p. 815, doi. 10.1002/prot.25744
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- Article
Identification of the retinoschisin-binding site on the retinal Na/K-ATPase.
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- PLoS ONE, 2019, v. 14, n. 5, p. 1, doi. 10.1371/journal.pone.0216320
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- Article
Sequence selection by FitSS4ASR alleviates ancestral sequence reconstruction as exemplified for geranylgeranylglyceryl phosphate synthase.
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- Biological Chemistry, 2019, v. 400, n. 3, p. 367, doi. 10.1515/hsz-2018-0344
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- Article
Characterizing the nuclease accessibility of DNA in human cells to map higher order structures of chromatin.
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- Nucleic Acids Research, 2019, v. 47, n. 3, p. 1239, doi. 10.1093/nar/gky1203
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- Article
The long non‐coding RNA LINC00941 and SPRR5 are novel regulators of human epidermal homeostasis.
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- EMBO Reports, 2019, v. 20, n. 2, p. 1, doi. 10.15252/embr.201846612
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- Article
Artificial Light Regulation of an Allosteric Bienzyme Complex by a Photosensitive Ligand.
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- ChemBioChem, 2018, v. 19, n. 16, p. 1750, doi. 10.1002/cbic.201800219
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- Article
Rosetta:MSF: a modular framework for multi-state computational protein design.
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- 2017
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- Publication type:
- Product Review
AGeNNT: annotation of enzyme families by means of refined neighborhood networks.
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- BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1689-6
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- Article
The Arabidopsis THO/TREX component TEX1 functionally interacts with MOS11 and modulates mRNA export and alternative splicing events.
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- Plant Molecular Biology, 2017, v. 93, n. 3, p. 283, doi. 10.1007/s11103-016-0561-9
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- Article
Combining ancestral sequence reconstruction with protein design to identify an interface hotspot in a key metabolic enzyme complex.
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- Proteins, 2017, v. 85, n. 2, p. 312, doi. 10.1002/prot.25225
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- Article
Assessing in silico the recruitment and functional spectrum of bacterial enzymes from secondary metabolism.
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- BMC Evolutionary Biology, 2017, v. 17, p. 1, doi. 10.1186/s12862-017-0886-2
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- Article
Plasmodium falciparum Nucleosomes Exhibit Reduced Stability and Lost Sequence Dependent Nucleosome Positioning.
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- PLoS Pathogens, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.ppat.1006080
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- Article
Gene silencing pathways found in the green alga Volvox carteri reveal insights into evolution and origins of small RNA systems in plants.
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- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3202-4
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- Article
Long-Term Persistence of Bi-functionality Contributes to the Robustness of Microbial Life through Exaptation.
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- PLoS Genetics, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pgen.1005836
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- Article
Ancestral protein reconstruction: techniques and applications.
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- Biological Chemistry, 2016, v. 397, n. 1, p. 1, doi. 10.1515/hsz-2015-0158
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- Article
An assessment of catalytic residue 3D ensembles for the prediction of enzyme function.
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- BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/s12859-015-0807-6
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- Publication type:
- Article
Umwandlung einer Anthranilatsynthase in eine Isochorismatsynthase: Implikationen für die Evolution von Chorismat-umsetzenden Enzymen.
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- Angewandte Chemie, 2015, v. 127, n. 38, p. 11423, doi. 10.1002/ange.201505063
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- Article
Conversion of Anthranilate Synthase into Isochorismate Synthase: Implications for the Evolution of Chorismate-Utilizing Enzymes.
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- Angewandte Chemie International Edition, 2015, v. 54, n. 38, p. 11270, doi. 10.1002/anie.201505063
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- Publication type:
- Article
Maize EMBRYO SAC family peptides interact differentially with pollen tubes and fungal cells.
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- Journal of Experimental Botany, 2015, v. 66, n. 17, p. 5205, doi. 10.1093/jxb/erv268
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- Article
Improving thermal and detergent stability of Bacillus stearothermophilus neopullulanase by rational enzyme design.
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- PEDS: Protein Engineering, Design & Selection, 2015, v. 28, p. 147, doi. 10.1093/protein/gzv001
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- Publication type:
- Article
Improving thermal and detergent stability of Bacillus stearothermophilus neopullulanase by rational enzyme design.
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- PEDS: Protein Engineering, Design & Selection, 2015, v. 28, n. 6, p. 147, doi. 10.1093/protein/gzv001
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- Publication type:
- Article
TNFα signalling primes chromatin for NF-κB binding and induces rapid and widespread nucleosome repositioning.
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- Genome Biology, 2014, v. 15, n. 12, p. 536, doi. 10.1186/s13059-014-0536-6
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- Article
H2rs: Deducing evolutionary and functionally important residue positions by means of an entropy and similarity based analysis of multiple sequence alignments.
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- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-118
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- Article
Nutzung natürlicher Proteinsymmetrie zum Design lichtschaltbarer Enzyminhibitoren.
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- Angewandte Chemie, 2014, v. 126, n. 2, p. 606, doi. 10.1002/ange.201307207
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- Article
Exploiting Protein Symmetry To Design Light-Controllable Enzyme Inhibitors.
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- Angewandte Chemie International Edition, 2014, v. 53, n. 2, p. 595, doi. 10.1002/anie.201307207
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- Article
CLIPS-4D: a classifier that distinguishes structurally and functionally important residue-positions based on sequence and 3D data.
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- Bioinformatics, 2013, v. 29, n. 23, p. 3029, doi. 10.1093/bioinformatics/btt519
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- Article
Turning catalytically inactive human Argonaute proteins into active slicer enzymes.
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- Nature Structural & Molecular Biology, 2013, v. 20, n. 7, p. 814, doi. 10.1038/nsmb.2577
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- Article
Corrigendum: Dimerization Determines Substrate Specificity of a Bacterial Prenyltransferase.
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- ChemBioChem, 2012, v. 13, n. 12, p. 1710, doi. 10.1002/cbic.201200473
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- Article
Dimerization Determines Substrate Specificity of a Bacterial Prenyltransferase.
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- ChemBioChem, 2012, v. 13, n. 9, p. 1297, doi. 10.1002/cbic.201200127
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- Article
Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes.
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- BMC Genomics, 2012, v. 13, n. 1, p. 144, doi. 10.1186/1471-2164-13-144
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- Article
Prescont: Predicting protein-protein interfaces utilizing four residue properties.
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- Proteins, 2012, v. 80, n. 1, p. 154, doi. 10.1002/prot.23172
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- Article
PROCOS: Computational analysis of protein-protein complexes.
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- Journal of Computational Chemistry, 2011, v. 32, n. 12, p. 2575, doi. 10.1002/jcc.21837
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- Article
A Fast and Precise Approach for Computational Saturation Mutagenesis and its Experimental Validation by Using an Artificial (βα).
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- ChemBioChem, 2011, v. 12, n. 10, p. 1544, doi. 10.1002/cbic.201100051
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- Article
Genes optimized by evolution for accurate and fast translation encode in Archaea and Bacteria a broad and characteristic spectrum of protein functions.
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- BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-617
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- Publication type:
- Article
Identification and characterization of two novel primate-specific histone H3 variants, H3.X and H3.Y.
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- Journal of Cell Biology, 2010, v. 190, n. 5, p. 777, doi. 10.1083/jcb.201002043
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- Article
DNA sequence encoded repression of rRNA gene transcription in chromatin.
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- Nucleic Acids Research, 2010, v. 38, n. 16, p. 5304, doi. 10.1093/nar/gkq263
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- Publication type:
- Article
Genes optimized by evolution for accurate and fast translation encode in Archaea and Bacteria a broad and characteristic spectrum of protein functions.
- Published in:
- BMC Genomics, 2010, v. 11, p. 617, doi. 10.1186/1471-2164-11-617
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- Publication type:
- Article
GO4genome: A Prokaryotic Phylogeny Based on Genome Organization.
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- Journal of Molecular Evolution, 2009, v. 68, n. 5, p. 550, doi. 10.1007/s00239-009-9233-6
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- Article
TransCent: Computational enzyme design by transferring active sites and considering constraints relevant for catalysis.
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- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-54
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- Publication type:
- Article
H2r: Identification of evolutionary important residues by means of an entropy based analysis of multiple sequence alignments.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-151
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- Publication type:
- Article
Modelling the evolution of the archaeal tryptophan synthase.
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- BMC Evolutionary Biology, 2007, v. 7, p. 1, doi. 10.1186/1471-2148-7-59
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- Article
AMIGOS: A Method for the Inspection of Genomic Organisation or Structure and its Application to Characterise Conserved Gene Arrangements.
- Published in:
- In Silico Biology, 2006, v. 6, n. 4, p. 281
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- Publication type:
- Article