Works by Mer, Arvind

Results: 14

Large-scale phenogenomic analysis of human cancers uncovers frequent alterations affecting SMC5/6 complex components in breast cancer.

Published in:

NAR Cancer, 2023, v. 5, n. 3, p. 1, doi. 10.1093/narcan/zcad047

By:

Roy, Shamayita;
Zaker, Arvin;
Mer, Arvind;
D’Amours, Damien

Publication type:

Article

Novel subtypes of NPM1-mutated AML with distinct outcome.

Published in:

Molecular & Cellular Oncology, 2021, v. 8, n. 4, p. 1, doi. 10.1080/23723556.2021.1924600

By:

Mer, Arvind Singh;
Minden, Mark D.;
Haibe-Kains, Benjamin;
Schimmer, Aaron D.

Publication type:

Article

Characterization of the diversity of type IV secretion system-encoding plasmids in Acinetobacter.

Published in:

Emerging Microbes & Infections, 2024, v. 13, n. 1, p. 1, doi. 10.1080/22221751.2024.2320929

By:

Nasser, Farah;
Gaudreau, Avery;
Lubega, Shareefah;
Zaker, Arvin;
Xuhua Xia;
Mer, Arvind S.;
D'Costa, Vanessa M.

Publication type:

Article

Assessing therapy response in patient-derived xenografts.

Published in:

Science Translational Medicine, 2021, v. 13, n. 620, p. 1, doi. 10.1126/scitranslmed.abf4969

By:

Ortmann, Janosch;
Rampášek, Ladislav;
Tai, Elijah;
Mer, Arvind Singh;
Shi, Ruoshi;
Stewart, Erin L.;
Mascaux, Celine;
Fares, Aline;
Pham, Nhu-An;
Beri, Gangesh;
Eeles, Christopher;
Tkachuk, Denis;
Ho, Chantal;
Sakashita, Shingo;
Weiss, Jessica;
Jiang, Xiaoqian;
Liu, Geoffrey;
Cescon, David W.;
O'Brien, Catherine A.;
Guo, Sheng

Publication type:

Article

A novel approach for protein subcellular location prediction using amino acid exposure.

Published in:

BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-342

By:

Mer, Arvind Singh;
Andrade-Navarro, Miguel A.

Publication type:

Article

CellWhere: graphical display of interaction networks organized on subcellular localizations.

Published in:

Nucleic Acids Research, 2015, v. 43, n. W1, p. W571, doi. 10.1093/nar/gkv354

By:

Lu Zhu;
Malatras, Apostolos;
Thorley, Matthew;
Aghoghogbe, Idonnya;
Mer, Arvind;
Duguez, Stephanie;
Butler-Browne, Gillian;
Voit, Thomas;
Duddy, William

Publication type:

Article

mBISON: Finding miRNA target over-representation in gene lists from ChIP-sequencing data.

Published in:

BMC Research Notes, 2015, v. 8, n. 1, p. 1, doi. 10.1186/s13104-015-1118-8

By:

Gebhardt, Marie Luise;
Mer, Arvind Singh;
Andrade-Navarro, Miguel Angel

Publication type:

Article

Text-mining-based feature selection for anticancer drug response prediction.

Published in:

Bioinformatics Advances, 2024, v. 4, n. 1, p. 1, doi. 10.1093/bioadv/vbae047

By:

Wu, Grace;
Zaker, Arvin;
Ebrahimi, Amirhosein;
Tripathi, Shivanshi;
Mer, Arvind Singh

Publication type:

Article

Study design requirements for RNA sequencing-based breast cancer diagnostics.

Published in:

Scientific Reports, 2016, p. 20200, doi. 10.1038/srep20200

By:

Mer, Arvind Singh;
Klevebring, Daniel;
Grönberg, Henrik;
Rantalainen, Mattias

Publication type:

Article

Biological and therapeutic implications of a unique subtype of NPM1 mutated AML.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-21233-0

By:

Mer, Arvind Singh;
Heath, Emily M.;
Madani Tonekaboni, Seyed Ali;
Dogan-Artun, Nergiz;
Nair, Sisira Kadambat;
Murison, Alex;
Garcia-Prat, Laura;
Shlush, Liran;
Hurren, Rose;
Voisin, Veronique;
Bader, Gary D.;
Nislow, Corey;
Rantalainen, Mattias;
Lehmann, Soren;
Gower, Mark;
Guidos, Cynthia J.;
Lupien, Mathieu;
Dick, John E.;
Minden, Mark D.;
Schimmer, Aaron D.

Publication type:

Article

MicroRNAs Modulate the Dynamics of the NF-κB Signaling Pathway.

Published in:

PLoS ONE, 2011, v. 6, n. 11, p. 1, doi. 10.1371/journal.pone.0027774

By:

Vaz, Candida;
Mer, Arvind Singh;
Bhattacharya, Alok;
Ramaswamy, Ramakrishna

Publication type:

Article

Expression levels of long non-coding RNAs are prognostic for AML outcome.

Published in:

Journal of Hematology & Oncology, 2018, v. 11, n. 1, p. 1, doi. 10.1186/s13045-018-0596-2

By:

Mer, Arvind Singh;
Lindberg, Johan;
Nilsson, Christer;
Klevebring, Daniel;
Wang, Mei;
Grönberg, Henrik;
Lehmann, Soren;
Rantalainen, Mattias

Publication type:

Article

Drug sensitivity prediction from cell line-based pharmacogenomics data: guidelines for developing machine learning models.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab294

By:

Sharifi-Noghabi, Hossein;
Jahangiri-Tazehkand, Soheil;
Smirnov, Petr;
Hon, Casey;
Mammoliti, Anthony;
Nair, Sisira Kadambat;
Mer, Arvind Singh;
Ester, Martin;
Haibe-Kains, Benjamin

Publication type:

Article

Orchestrating and sharing large multimodal data for transparent and reproducible research.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25974-w

By:

Mammoliti, Anthony;
Smirnov, Petr;
Nakano, Minoru;
Safikhani, Zhaleh;
Eeles, Christopher;
Seo, Heewon;
Nair, Sisira Kadambat;
Mer, Arvind S.;
Smith, Ian;
Ho, Chantal;
Beri, Gangesh;
Kusko, Rebecca;
Massive Analysis Quality Control (MAQC) Society Board of Directors;
Shraddha, Thakkar;
Sansone, Susanna-Assunta;
Tong, Weida;
Wolfinger, Russ D.;
Mason, Christopher E.;
Jones, Wendell;
Dopazo, Joaquin

Publication type:

Article