Found: 39
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Compression algorithm for colored de Bruijn graphs.
- Published in:
- Algorithms for Molecular Biology, 2024, v. 19, n. 1, p. 1, doi. 10.1186/s13015-024-00254-6
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- Publication type:
- Article
ESKEMAP: exact sketch-based read mapping.
- Published in:
- Algorithms for Molecular Biology, 2024, v. 19, n. 1, p. 1, doi. 10.1186/s13015-024-00261-7
- By:
- Publication type:
- Article
Transcript Isoform Diversity of Ampliconic Genes on the Y Chromosome of Great Apes.
- Published in:
- Genome Biology & Evolution, 2023, v. 15, n. 11, p. 1, doi. 10.1093/gbe/evad205
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- Publication type:
- Article
Whole-genome sequence and assembly of the Javan gibbon (Hylobates moloch).
- Published in:
- Journal of Heredity, 2023, v. 114, n. 1, p. 35, doi. 10.1093/jhered/esac043
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- Publication type:
- Article
K-mer File Format: a standardized and compact disk representation of sets of k-mers.
- Published in:
- Bioinformatics, 2022, v. 38, n. 18, p. 4423, doi. 10.1093/bioinformatics/btac528
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- Publication type:
- Article
minimizer Jaccard estimator is biased and inconsistent.
- Published in:
- Bioinformatics, 2022, v. 38, p. i169, doi. 10.1093/bioinformatics/btac244
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- Publication type:
- Article
Markov chains improve the significance computation of overlapping genome annotations.
- Published in:
- Bioinformatics, 2022, v. 38, p. i203, doi. 10.1093/bioinformatics/btac255
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- Publication type:
- Article
GPU-accelerated and pipelined methylation calling.
- Published in:
- Bioinformatics Advances, 2022, v. 2, n. 1, p. 1, doi. 10.1093/bioadv/vbac088
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- Publication type:
- Article
kmtricks: efficient and flexible construction of Bloom filters for large sequencing data collections.
- Published in:
- Bioinformatics Advances, 2022, v. 2, n. 1, p. 1, doi. 10.1093/bioadv/vbac029
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- Publication type:
- Article
Recombination Marks the Evolutionary Dynamics of a Recently Endogenized Retrovirus.
- Published in:
- Molecular Biology & Evolution, 2021, v. 38, n. 12, p. 5423, doi. 10.1093/molbev/msab252
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- Publication type:
- Article
Disk compression of k-mer sets.
- Published in:
- Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00192-7
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- Publication type:
- Article
What do Eulerian and Hamiltonian cycles have to do with genome assembly?
- Published in:
- PLoS Computational Biology, 2021, v. 17, n. 5, p. 1, doi. 10.1371/journal.pcbi.1008928
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- Publication type:
- Article
Error correction enables use of Oxford Nanopore technology for reference-free transcriptome analysis.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-020-20340-8
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- Publication type:
- Article
Author Correction: Error correction enables use of Oxford Nanopore technology for reference-free transcriptome analysis.
- Published in:
- 2021
- By:
- Publication type:
- Correction Notice
Error correction enables use of Oxford Nanopore technology for reference-free transcriptome analysis.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-020-20340-8
- By:
- Publication type:
- Article
Scalable multiple whole-genome alignment and locally collinear block construction with SibeliaZ.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-19777-8
- By:
- Publication type:
- Article
Ampliconic Genes on the Great Ape Y Chromosomes: Rapid Evolution of Copy Number but Conservation of Expression Levels.
- Published in:
- Genome Biology & Evolution, 2020, v. 12, n. 6, p. 842, doi. 10.1093/gbe/evaa088
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- Publication type:
- Article
Ten Simple Rules for writing algorithmic bioinformatics conference papers.
- Published in:
- 2020
- By:
- Publication type:
- Editorial
Improved representation of sequence bloom trees.
- Published in:
- Bioinformatics, 2020, v. 36, n. 3, p. 721, doi. 10.1093/bioinformatics/btz662
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- Publication type:
- Article
Dosage regulation, and variation in gene expression and copy number of human Y chromosome ampliconic genes.
- Published in:
- PLoS Genetics, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pgen.1008369
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- Publication type:
- Article
DiscoverY: a classifier for identifying Y chromosome sequences in male assemblies.
- Published in:
- BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-5996-3
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- Publication type:
- Article
Modeling biological problems in computer science: a case study in genome assembly.
- Published in:
- Briefings in Bioinformatics, 2019, p. 1376, doi. 10.1093/bib/bby003
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- Publication type:
- Article
Toward fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
- Published in:
- Bioinformatics, 2019, v. 35, n. 3, p. 415, doi. 10.1093/bioinformatics/bty641
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- Publication type:
- Article
Correcting palindromes in long reads after whole-genome amplification.
- Published in:
- BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5164-1
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- Publication type:
- Article
Deciphering highly similar multigene family transcripts from Iso-Seq data with IsoCon.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-06910-x
- By:
- Publication type:
- Article
RecoverY: k-mer-based read classification for Y-chromosome-specific sequencing and assembly.
- Published in:
- Bioinformatics, 2018, v. 34, n. 7, p. 1125, doi. 10.1093/bioinformatics/btx771
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- Publication type:
- Article
TwoPaCo: an efficient algorithm to build the compacted de Bruijn graph from many complete genomes.
- Published in:
- Bioinformatics, 2017, v. 33, n. 24, p. 4024, doi. 10.1093/bioinformatics/btw609
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- Publication type:
- Article
VarMatch: robust matching of small variant datasets using flexible scoring schemes.
- Published in:
- Bioinformatics, 2017, v. 33, n. 9, p. 1301, doi. 10.1093/bioinformatics/btw797
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- Publication type:
- Article
Compacting de Bruijn graphs from sequencing data quickly and in low memory.
- Published in:
- Bioinformatics, 2016, v. 32, n. 12, p. i201, doi. 10.1093/bioinformatics/btw279
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- Publication type:
- Article
Giraffe genome sequence reveals clues to its unique morphology and physiology.
- Published in:
- Nature Communications, 2016, v. 7, n. 5, p. 11519, doi. 10.1038/ncomms11519
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- Publication type:
- Article
Improving the Power of Structural Variation Detection by Augmenting the Reference.
- Published in:
- PLoS ONE, 2015, v. 10, n. 9, p. 1, doi. 10.1371/journal.pone.0136771
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- Publication type:
- Article
A combinatorial approach to the design of vaccines.
- Published in:
- Journal of Mathematical Biology, 2015, v. 70, n. 6, p. 1327, doi. 10.1007/s00285-014-0797-4
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- Publication type:
- Article
Informed and automated k-mer size selection for genome assembly.
- Published in:
- Bioinformatics, 2014, v. 30, n. 1, p. 31, doi. 10.1093/bioinformatics/btt310
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- Publication type:
- Article
Using state machines to model the Ion Torrent sequencing process and to improve read error rates.
- Published in:
- Bioinformatics, 2013, v. 29, n. 13, p. i344, doi. 10.1093/bioinformatics/btt212
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- Publication type:
- Article
Reprever: resolving low-copy duplicated sequences using template driven assembly.
- Published in:
- Nucleic Acids Research, 2013, v. 41, n. 12, p. e128, doi. 10.1093/nar/gkt339
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- Publication type:
- Article
The plane-width of graphs.
- Published in:
- Journal of Graph Theory, 2011, v. 68, n. 3, p. 229, doi. 10.1002/jgt.20554
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- Publication type:
- Article
Error correction of high-throughput sequencing datasets with non-uniform coverage.
- Published in:
- Bioinformatics, 2011, v. 27, n. 13, p. i137, doi. 10.1093/bioinformatics/btr208
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- Publication type:
- Article
Computational methods for discovering structural variation with next-generation sequencing.
- Published in:
- Nature Methods, 2009, v. 6, p. S13, doi. 10.1038/nmeth.1374
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- Publication type:
- Article
A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG).
- Published in:
- 2009
- By:
- Publication type:
- Proceeding