Works by McIlroy, Simon J.

Results: 21

High quality draft genome sequence of Meganema perideroedes str. Gr1<sup>T</sup> and a proposal for its reclassification to the family Meganemaceae fam. nov.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0013-1

By:

McIlroy, Simon J.;
Lapidus, Alla;
Thomsen, Trine R.;
Han, James;
Haynes, Matthew;
Lobos, Elizabeth;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia N.;
Markowitz, Victor;
Verbarg, Susanne;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos;
Nielsen, Per H.

Publication type:

Article

A genome-centric view of the role of the Acropora kenti microbiome in coral health and resilience.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-46905-5

By:

Messer, Lauren F.;
Bourne, David G.;
Robbins, Steven J.;
Clay, Megan;
Bell, Sara C.;
McIlroy, Simon J.;
Tyson, Gene W.

Publication type:

Article

Multi-heme cytochrome-mediated extracellular electron transfer by the anaerobic methanotroph 'Candidatus Methanoperedens nitroreducens'.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-41847-w

By:

Zhang, Xueqin;
Joyce, Georgina H.;
Leu, Andy O.;
Zhao, Jing;
Rabiee, Hesamoddin;
Virdis, Bernardino;
Tyson, Gene W.;
Yuan, Zhiguo;
McIlroy, Simon J.;
Hu, Shihu

Publication type:

Article

Phylogenetic and metabolic diversity of microbial communities performing anaerobic ammonium and methane oxidations under different nitrogen loadings.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00246-4

By:

Li, Jie;
Liu, Tao;
McIlroy, Simon J;
Tyson, Gene W;
Guo, Jianhua

Publication type:

Article

Dynamics of the Fouling Layer Microbial Community in a Membrane Bioreactor.

Published in:

PLoS ONE, 2016, v. 11, n. 7, p. 1, doi. 10.1371/journal.pone.0158811

By:

Ziegler, Anja S.;
McIlroy, Simon J.;
Larsen, Poul;
Albertsen, Mads;
Hansen, Aviaja A.;
Heinen, Nicolas;
Nielsen, Per Halkjær

Publication type:

Article

'Candidatus Competibacter'-lineage genomes retrieved from metagenomes reveal functional metabolic diversity.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 3, p. 613, doi. 10.1038/ismej.2013.162

By:

McIlroy, Simon J;
Albertsen, Mads;
Andresen, Eva K;
Saunders, Aaron M;
Kristiansen, Rikke;
Stokholm-Bjerregaard, Mikkel;
Nielsen, Kåre L;
Nielsen, Per H

Publication type:

Article

The biogeography of the mucosa-associated microbiome in health and disease.

Published in:

Frontiers in Microbiology, 2024, p. 01, doi. 10.3389/fmicb.2024.1454910

By:

Sternes, Peter R.;
Shah, Ayesha;
Pintos, Camila Ayala;
Fairlie, Thomas;
Koloski, Natasha;
Kang, Seungha;
Tousignant, Kaylyn D.;
McIlroy, Simon J.;
Morrison, Mark;
Tyson, Gene W.;
Holtmann, Gerald J.

Publication type:

Article

"Candidatus Propionivibrio aalborgensis": A Novel Glycogen Accumulating Organism Abundant in Full-Scale Enhanced Biological Phosphorus Removal Plants.

Published in:

Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.01033

By:

Albertsen, Mads;
McIlroy, Simon J.;
Stokholm-Bjerregaard, Mikkel;
Karst, Søren M.;
Nielsen, Per H.;
McMahon, Katherine;
Skennerton, Connor Tobias

Publication type:

Article

Re-appraisal of the phylogeny and fluorescence in situ hybridization probes for the analysis of the C ompetibacteraceae in wastewater treatment systems.

Published in:

Environmental Microbiology Reports, 2015, v. 7, n. 2, p. 166, doi. 10.1111/1758-2229.12215

By:

McIlroy, Simon J.;
Nittami, Tadashi;
Kanai, Eri;
Fukuda, Junji;
Saunders, Aaron M.;
Nielsen, Per Halkjær

Publication type:

Article

The activated sludge bulking filament Eikelboom morphotype 0914 is a member of the Chloroflexi.

Published in:

Environmental Microbiology Reports, 2011, v. 3, n. 2, p. 159, doi. 10.1111/j.1758-2229.2010.00201.x

By:

Speirs, Lachlan B. M.;
McIlroy, Simon J.;
Petrovski, Steve;
Seviour, Robert J.

Publication type:

Article

Culture-Independent Analyses Reveal Novel Anaerolineaceae as Abundant Primary Fermenters in Anaerobic Digesters Treating Waste Activated Sludge.

Published in:

Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.01134

By:

McIlroy, Simon J.;
Kirkegaard, Rasmus H.;
Dueholm, Morten S.;
Fernando, Eustace;
Karst, Søren M.;
Albertsen, Mads;
Nielsen, Per H.

Publication type:

Article

A Critical Assessment of the Microorganisms Proposed to be Important to Enhanced Biological Phosphorus Removal in Full-Scale Wastewater Treatment Systems.

Published in:

Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00718

By:

Stokholm-Bjerregaard, Mikkel;
McIlroy, Simon J.;
Nierychlo, Marta;
Karst, Søren M.;
Albertsen, Mads;
Nielsen, Per H.

Publication type:

Article

Insights Into Phylogeny, Diversity and Functional Potential of Poseidoniales Viruses.

Published in:

Environmental Microbiology, 2025, v. 27, n. 1, p. 1, doi. 10.1111/1462-2920.70017

By:

Prabhu, Apoorva;
Zaugg, Julian;
Chan, Cheong Xin;
McIlroy, Simon J.;
Rinke, Chris

Publication type:

Article

Non-target sites with single nucleotide insertions or deletions are frequently found in 16S rRNA sequences and can lead to false positives in fluorescence in situ hybridization (FISH).

Published in:

Environmental Microbiology, 2011, v. 13, n. 1, p. 33, doi. 10.1111/j.1462-2920.2010.02306.x

By:

McIlroy, Simon J.;
Tillett, Daniel;
Petrovski, Steve;
Seviour, Robert J.

Publication type:

Article

Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias.

Published in:

Nature Biotechnology, 2018, v. 36, n. 2, p. 190, doi. 10.1038/nbt.4045

By:

Karst, Søren M;
Dueholm, Morten S;
McIlroy, Simon J;
Kirkegaard, Rasmus H;
Nielsen, Per H;
Albertsen, Mads

Publication type:

Article

Isolation and characterization of two plasmids in a clinical Acinetobacter nosocomialis strain.

Published in:

BMC Research Notes, 2014, v. 7, n. 1, p. 732, doi. 10.1186/1756-0500-7-732

By:

Gifford, Bianca;
Tucci, Joseph;
McIlroy, Simon J.;
Petrovski, Steve

Publication type:

Article

Candidatus Amarolinea and Candidatus Microthrix Are Mainly Responsible for Filamentous Bulking in Danish Municipal Wastewater Treatment Plants.

Published in:

Frontiers in Microbiology, 2020, v. 11, p. 1, doi. 10.3389/fmicb.2020.01214

By:

Nierychlo, Marta;
McIlroy, Simon J.;
Kucheryavskiy, Sergey;
Jiang, Chenjing;
Ziegler, Anja S.;
Kondrotaite, Zivile;
Stokholm-Bjerregaard, Mikkel;
Nielsen, Per Halkjær

Publication type:

Article

Anaerobic oxidation of propane coupled to nitrate reduction by a lineage within the class Symbiobacteriia.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-33872-y

By:

Wu, Mengxiong;
Li, Jie;
Leu, Andy O.;
Erler, Dirk V.;
Stark, Terra;
Tyson, Gene W.;
Yuan, Zhiguo;
McIlroy, Simon J.;
Guo, Jianhua

Publication type:

Article

Expanding the phylogenetic distribution of cytochrome b-containing methanogenic archaea sheds light on the evolution of methanogenesis.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2022, v. 16, n. 10, p. 2373, doi. 10.1038/s41396-022-01281-0

By:

Ou, Ya-Fei;
Dong, Hong-Po;
McIlroy, Simon J.;
Crowe, Sean A.;
Hallam, Steven J.;
Han, Ping;
Kallmeyer, Jens;
Simister, Rachel L.;
Vuillemin, Aurele;
Leu, Andy O.;
Liu, Zhanfei;
Zheng, Yan-Ling;
Sun, Qian-Li;
Liu, Min;
Tyson, Gene W.;
Hou, Li-Jun

Publication type:

Article

Methane-dependent selenate reduction by a bacterial consortium.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2021, v. 15, n. 12, p. 3683, doi. 10.1038/s41396-021-01044-3

By:

Shi, Ling-Dong;
Lv, Pan-Long;
McIlroy, Simon J.;
Wang, Zhen;
Dong, Xiao-Li;
Kouris, Angela;
Lai, Chun-Yu;
Tyson, Gene W.;
Strous, Marc;
Zhao, He-Ping

Publication type:

Article

Anaerobic methane oxidation coupled to manganese reduction by members of the Methanoperedenaceae.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2020, v. 14, n. 4, p. 1030, doi. 10.1038/s41396-020-0590-x

By:

Leu, Andy O.;
Cai, Chen;
McIlroy, Simon J.;
Southam, Gordon;
Orphan, Victoria J.;
Yuan, Zhiguo;
Hu, Shihu;
Tyson, Gene W.

Publication type:

Article