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CONIPHER: a computational framework for scalable phylogenetic reconstruction with error correction.
- Published in:
- Nature Protocols, 2024, v. 19, n. 1, p. 159, doi. 10.1038/s41596-023-00913-9
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- Publication type:
- Article
Refphase: Multi-sample phasing reveals haplotype-specific copy number heterogeneity.
- Published in:
- PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011379
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- Publication type:
- Article
Phenotyping of lymphoproliferative tumours generated in xenografts of non-small cell lung cancer.
- Published in:
- Frontiers in Oncology, 2023, p. 1, doi. 10.3389/fonc.2023.1156743
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- Publication type:
- Article
ACT-Discover: identifying karyotype heterogeneity in pancreatic cancer evolution using ctDNA.
- Published in:
- Genome Medicine, 2023, v. 15, n. 1, p. 1, doi. 10.1186/s13073-023-01171-w
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- Publication type:
- Article
Integrated transcriptome landscape of ALS identifies genome instability linked to TDP-43 pathology.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-37630-6
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- Publication type:
- Article
Tracking the evolution of esophageal squamous cell carcinoma under dynamic immune selection by multi-omics sequencing.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-36558-1
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- Publication type:
- Article
Therapy sculpts the complex interplay between cancer and the immune system during tumour evolution.
- Published in:
- Genome Medicine, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13073-022-01138-3
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- Publication type:
- Article
Computational Analysis Reveals the Temporal Acquisition of Pathway Alterations during the Evolution of Cancer.
- Published in:
- Cancers, 2022, v. 14, n. 23, p. 5817, doi. 10.3390/cancers14235817
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- Publication type:
- Article
Cold and heterogeneous T cell repertoire is associated with copy number aberrations and loss of immune genes in small-cell lung cancer.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-26821-8
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- Publication type:
- Article
Promises and challenges of adoptive T-cell therapies for solid tumours.
- Published in:
- 2021
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- Publication type:
- journal article
Author Correction: Multi-region exome sequencing reveals genomic evolution from preneoplasia to lung adenocarcinoma.
- Published in:
- 2021
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- Publication type:
- Correction Notice
Understanding the impact of immune-mediated selection on lung cancer evolution.
- Published in:
- 2021
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- Publication type:
- journal article
Immune evolution from preneoplasia to invasive lung adenocarcinomas and underlying molecular features.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22890-x
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- Publication type:
- Article
Identifying key questions in the ecology and evolution of cancer.
- Published in:
- Evolutionary Applications, 2021, v. 14, n. 4, p. 877, doi. 10.1111/eva.13190
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- Publication type:
- Article
Evolution of DNA methylome from precancerous lesions to invasive lung adenocarcinomas.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-20907-z
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- Publication type:
- Article
Multiomics profiling of primary lung cancers and distant metastases reveals immunosuppression as a common characteristic of tumor cells with metastatic plasticity.
- Published in:
- Genome Biology, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s13059-020-02175-0
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- Publication type:
- Article
Germline ancestry influences the evolutionary disease course in lung adenocarcinomas.
- Published in:
- Evolutionary Applications, 2020, v. 13, n. 7, p. 1550, doi. 10.1111/eva.12964
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- Publication type:
- Article
Neoantigen quality, not quantity.
- Published in:
- Science Translational Medicine, 2019, v. 11, n. 506, p. 1, doi. 10.1126/scitranslmed.aax7918
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- Publication type:
- Article
Multi-region exome sequencing reveals genomic evolution from preneoplasia to lung adenocarcinoma.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-10877-8
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- Publication type:
- Article
Plk1 overexpression induces chromosomal instability and suppresses tumor development.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-05429-5
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- Publication type:
- Article
Oncogenic PIK3CA induces centrosome amplification and tolerance to genome doubling.
- Published in:
- Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-02002-4
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- Publication type:
- Article
Large-scale detection of antigen-specific T cells using peptide-MHC-I multimers labeled with DNA barcodes.
- Published in:
- Nature Biotechnology, 2016, v. 34, n. 10, p. 1037, doi. 10.1038/nbt.3662
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- Publication type:
- Article
DNA replication stress mediates APOBEC3 family mutagenesis in breast cancer.
- Published in:
- Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-1042-9
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- Publication type:
- Article
deconstructSigs: delineating mutational processes in single tumors distinguishes DNA repair deficiencies and patterns of carcinoma evolution.
- Published in:
- Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-0893-4
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- Publication type:
- Article
Clonal status of actionable driver events and the timing of mutational processes in cancer evolution.
- Published in:
- Science Translational Medicine, 2015, v. 7, n. 283, p. 1, doi. 10.1126/scitranslmed.aaa1408
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- Publication type:
- Article
Development of synchronous VHL syndrome tumors reveals contingencies and constraints to tumor evolution.
- Published in:
- Genome Biology, 2014, v. 15, n. 8, p. 1, doi. 10.1186/s13059-014-0433-z
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- Publication type:
- Article
Deciphering intratumor heterogeneity and temporal acquisition of driver events to refine precision medicine.
- Published in:
- Genome Biology, 2014, v. 15, n. 7, p. 453, doi. 10.1186/s13059-014-0453-8
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- Publication type:
- Article
Genomic architecture and evolution of clear cell renal cell carcinomas defined by multiregion sequencing.
- Published in:
- Nature Genetics, 2014, v. 46, n. 3, p. 225, doi. 10.1038/ng.2891
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- Publication type:
- Article
Ultra-deep T cell receptor sequencing reveals the complexity and intratumour heterogeneity of T cell clones in renal cell carcinomas.
- Published in:
- Journal of Pathology, 2013, v. 231, n. 4, p. 424, doi. 10.1002/path.4284
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- Publication type:
- Article
The causes and consequences of genetic heterogeneity in cancer evolution.
- Published in:
- Nature, 2013, v. 501, n. 7467, p. 338, doi. 10.1038/nature12625
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- Publication type:
- Article
Parallel evolution of tumour subclones mimics diversity between tumours.
- Published in:
- Journal of Pathology, 2013, v. 230, n. 4, p. 356, doi. 10.1002/path.4214
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- Publication type:
- Article
Cancer chromosomal instability: therapeutic and diagnostic challenges.
- Published in:
- EMBO Reports, 2012, v. 13, n. 6, p. 528, doi. 10.1038/embor.2012.61
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- Publication type:
- Article