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Consumption of sucralose- and acesulfame-potassium-containing diet soda alters the relative abundance of microbial taxa at the species level: findings of two pilot studies.
- Published in:
- Applied Physiology, Nutrition & Metabolism, 2024, v. 49, n. 1, p. 125, doi. 10.1139/apnm-2022-0471
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- Publication type:
- Article
Census-based rapid and accurate metagenome taxonomic profiling.
- Published in:
- BMC Genomics, 2014, v. 15, n. 1, p. 918, doi. 10.1186/1471-2164-15-918
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- Publication type:
- Article
Sequence signatures in envelope protein may determine whether flaviviruses produce hemorrhagic or encephalitic syndromes.
- Published in:
- Virus Genes, 2009, v. 39, n. 1, p. 1, doi. 10.1007/s11262-009-0343-4
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- Publication type:
- Article
BioMuta and BioXpress: mutation and expression knowledgebases for cancer biomarker discovery.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. D1, p. D1128, doi. 10.1093/nar/gkx907
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- Publication type:
- Article
Separation and assembly of deep sequencing data into discrete sub-population genomes.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. 19, p. 10989, doi. 10.1093/nar/gkx755
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- Publication type:
- Article
Human germline and pan-cancer variomes and their distinct functional profiles.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. 18, p. 11570, doi. 10.1093/nar/gku772
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- Publication type:
- Article
Structure-Guided Comparative Analysis of Proteins: Principles, Tools, and Applications for Predicting Function.
- Published in:
- PLoS Computational Biology, 2008, v. 4, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000151
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- Publication type:
- Article
Low-Substrate Regulated Microaerophilic Behavior as a Stress Response of Aquatic and Soil Bacteria.
- Published in:
- Current Microbiology, 2000, v. 41, n. 2, p. 79, doi. 10.1007/s002840010097
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- Publication type:
- Article
Computational clustering for viral reference proteomes.
- Published in:
- Bioinformatics, 2016, v. 32, n. 13, p. 2041, doi. 10.1093/bioinformatics/btw110
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- Publication type:
- Article
Bioinformatics tools developed to support BioCompute Objects.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab008
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- Publication type:
- Article
DEXTER: Disease-Expression Relation Extraction from Text.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay045
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- Publication type:
- Article
BioXpress: an integrated RNA-seq-derived gene expression database for pan-cancer analysis.
- Published in:
- 2015
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- Publication type:
- Product Review
Generating a focused view of disease ontology cancer terms for pan-cancer data integration and analysis.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2015, v. 2015, p. 1, doi. 10.1093/database/bav032
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- Publication type:
- Article
A framework for organizing cancer-related variations from existing databases, publications and NGS data using a High-performance Integrated Virtual Environment (HIVE).
- Published in:
- Database: The Journal of Biological Databases & Curation, 2014, v. 2014, p. 1, doi. 10.1093/database/bau022
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- Publication type:
- Article
Biocuration Virtual Issue 2012.
- Published in:
- 2012
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- Publication type:
- Proceeding
A comprehensive protein-centric ID mapping service for molecular data integration.
- Published in:
- Bioinformatics, 2011, v. 27, n. 8, p. 1190, doi. 10.1093/bioinformatics/btr101
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- Publication type:
- Article
UniRef: comprehensive and non-redundant UniProt reference clusters.
- Published in:
- Bioinformatics, 2007, v. 23, n. 10, p. 1282, doi. 10.1093/bioinformatics/btm098
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- Publication type:
- Article
Investigation of somatic single nucleotide variations in human endogenous retrovirus elements and their potential association with cancer.
- Published in:
- PLoS ONE, 2019, v. 14, n. 4, p. 1, doi. 10.1371/journal.pone.0213770
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- Publication type:
- Article
Computational identification of strain-, species- and genus-specific proteins.
- Published in:
- BMC Bioinformatics, 2005, v. 6, p. 279, doi. 10.1186/1471-2105-6-279
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- Publication type:
- Article
GeneOrder3.0: Software for comparing the order of genes in pairs of small bacterial genomes.
- Published in:
- BMC Bioinformatics, 2004, v. 5, p. 52, doi. 10.1186/1471-2105-5-52
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- Publication type:
- Article
The COG database: an updated version includes eukaryotes.
- Published in:
- BMC Bioinformatics, 2003, v. 4, p. 41, doi. 10.1186/1471-2105-4-41
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- Publication type:
- Article
CoreGenes: A computational tool for identifying and cataloging "core" genes in a set of small genomes.
- Published in:
- BMC Bioinformatics, 2002, v. 3, p. 12, doi. 10.1186/1471-2105-3-12
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- Publication type:
- Article
HIVE-Hexagon: High-Performance, Parallelized Sequence Alignment for Next-Generation Sequencing Data Analysis.
- Published in:
- PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0099033
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- Publication type:
- Article
Proteome-Wide Analysis of Single-Nucleotide Variations in the N-Glycosylation Sequon of Human Genes.
- Published in:
- PLoS ONE, 2012, v. 7, n. 5, p. 1, doi. 10.1371/journal.pone.0036212
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- Publication type:
- Article
Representative Proteomes: A Stable, Scalable and Unbiased Proteome Set for Sequence Analysis and Functional Annotation.
- Published in:
- PLoS ONE, 2011, v. 6, n. 4, p. 1, doi. 10.1371/journal.pone.0018910
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- Publication type:
- Article
Systems Integration of Biodefense Omics Data for Analysis of Pathogen-Host Interactions and Identification of Potential Targets.
- Published in:
- PLoS ONE, 2009, v. 4, n. 9, p. 1, doi. 10.1371/journal.pone.0007162
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- Publication type:
- Article
Proteome-wide analysis of nonsynonymous single-nucleotide variations in active sites of human proteins.
- Published in:
- FEBS Journal, 2013, v. 280, n. 6, p. 1542, doi. 10.1111/febs.12155
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- Publication type:
- Article
A framework for application of metabolic modeling in yeast to predict the effects of nsSNV in human orthologs.
- Published in:
- Biology Direct, 2014, v. 9, n. 1, p. 2, doi. 10.1186/1745-6150-9-9
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- Publication type:
- Article
Community annotation in biology.
- Published in:
- Biology Direct, 2010, v. 5, p. 12, doi. 10.1186/1745-6150-5-12
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- Publication type:
- Article
The Glycan Structure Dictionary—a dictionary describing commonly used glycan structure terms.
- Published in:
- Glycobiology, 2023, v. 33, n. 5, p. 354, doi. 10.1093/glycob/cwad014
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- Publication type:
- Article
Modeling and integration of N-glycan biomarkers in a comprehensive biomarker data model.
- Published in:
- Glycobiology, 2022, v. 32, n. 10, p. 855, doi. 10.1093/glycob/cwac046
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- Publication type:
- Article
Enhancing the interoperability of glycan data flow between ChEBI, PubChem and GlyGen.
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- Glycobiology, 2021, v. 31, n. 11, p. 1510, doi. 10.1093/glycob/cwab078
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- Publication type:
- Article
The GlySpace Alliance: toward a collaborative global glycoinformatics community.
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- Glycobiology, 2020, v. 30, n. 2, p. 70, doi. 10.1093/glycob/cwz078
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- Publication type:
- Article
GlyGen: Computational and Informatics Resources for Glycoscience.
- Published in:
- Glycobiology, 2020, v. 30, n. 2, p. 72, doi. 10.1093/glycob/cwz080
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- Publication type:
- Article
GeneOrder: comparing the order of genes in small genomes.
- Published in:
- Bioinformatics, 2001, v. 17, n. 2, p. 162, doi. 10.1093/bioinformatics/17.2.162
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- Publication type:
- Article
Non-synonymous variations in cancer and their effects on the human proteome: workflow for NGS data biocuration and proteome-wide analysis of TCGA data.
- Published in:
- BMC Bioinformatics, 2014, v. 15, n. 1, p. 2, doi. 10.1186/1471-2105-15-28
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- Publication type:
- Article
Enhancement of Fe(III), Co(III), and Cr(VI) reduction at elevated temperatures and by a thermophilic bacterium.
- Published in:
- Molecular Biotechnology, 1996, v. 57, n. 1, p. 923, doi. 10.1007/BF02941773
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- Publication type:
- Article
Multi-omics approaches to studying gastrointestinal microbiome in the context of precision medicine and machine learning.
- Published in:
- Frontiers in Molecular Biosciences, 2024, p. 01, doi. 10.3389/fmolb.2023.1337373
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- Publication type:
- Article
COVID-19 biomarkers and their overlap with comorbidities in a disease biomarker data model.
- Published in:
- Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab191
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- Publication type:
- Article
The Universal Protein Resource (UniProt): an expanding universe of protein information.
- Published in:
- Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d187
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- Publication type:
- Article
PIRSF: family classification system at the Protein Information Resource.
- Published in:
- Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d112
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- Publication type:
- Article
CDD: a curated Entrez database of conserved domain alignments.
- Published in:
- Nucleic Acids Research, 2003, v. 31, n. 1, p. 383, doi. 10.1093/nar/gkg087
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- Publication type:
- Article
MMDB: Entrez's 3D-structure database.
- Published in:
- Nucleic Acids Research, 2003, v. 31, n. 1, p. 474, doi. 10.1093/nar/gkg086
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- Publication type:
- Article
Detection of novel members, structure–function analysis and evolutionary classification of the 2H phosphoesterase superfamily.
- Published in:
- Nucleic Acids Research, 2002, v. 30, n. 23, p. 5229, doi. 10.1093/nar/gkf645
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- Publication type:
- Article
High-Performance Integrated Virtual Environment (HIVE) Tools and Applications for Big Data Analysis.
- Published in:
- Genes, 2014, v. 5, n. 4, p. 957, doi. 10.3390/genes5040957
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- Publication type:
- Article
Single-Nucleotide Variations in Cardiac Arrhythmias: Prospects for Genomics and Proteomics Based Biomarker Discovery and Diagnostics.
- Published in:
- Genes, 2014, v. 5, n. 2, p. 254, doi. 10.3390/genes5020254
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- Publication type:
- Article
Enhanced Interface for Retrieving Glycan and Glycosylation Data from GlyGen.
- Published in:
- FASEB Journal, 2021, v. 35, p. N.PAG, doi. 10.1096/fasebj.2021.35.S1.04541
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- Publication type:
- Article
Distribution bias analysis of germline and somatic single-nucleotide variations that impact protein functional site and neighboring amino acids.
- Published in:
- Scientific Reports, 2017, p. 42169, doi. 10.1038/srep42169
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- Publication type:
- Article
DiMeX: A Text Mining System for Mutation-Disease Association Extraction.
- Published in:
- PLoS ONE, 2016, v. 11, n. 4, p. 1, doi. 10.1371/journal.pone.0152725
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- Publication type:
- Article