Works by Masui, Ryoji

Results: 49

Characterization of DNA polymerase X from Thermus thermophilus HB8 reveals the POLXc and PHP domains are both required for 3′–5′ exonuclease activity.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 6, p. 2037, doi. 10.1093/nar/gkp064

By:

Nakane, Shuhei;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Analysis of a nuclease activity of catalytic domain of Thermus thermophilus MutS2 by high-accuracy mass spectrometry.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 15, p. e100, doi. 10.1093/nar/gkm575

By:

Fukui, Kenji;
Takahata, Yoshio;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Nuclease activity of the MutS homologue MutS2 from Thermus thermophilus is confined to the Smr domain.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 3, p. 850, doi. 10.1093/nar/gkl735

By:

Fukui, Kenji;
Kosaka, Hiromichi;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Overexpression, purification and characterization of RecJ protein from Thermus thermophilus HB8 and its core domain.

Published in:

Nucleic Acids Research, 2001, v. 29, n. 22, p. 4617, doi. 10.1093/nar/29.22.4617

By:

Yamagata, Atsushi;
Masui, Ryoji;
Kakuta, Yoshimitsu;
Kuramitsu, Seiki;
Fukuyama, Keiichi

Publication type:

Article

Domain organization and functional analysis of Thermus thermophilus MutS protein.

Published in:

Nucleic Acids Research, 1998, v. 26, n. 18, p. 4153, doi. 10.1093/nar/26.18.4153

By:

Tachiki, Hidehisa;
Kato, Ryuichi;
Masui, Ryoji;
Hasegawa, Koichi;
Itakura, Hiroyuki;
Fukuyama, Keiichi;
Kuramitsu, Seiki

Publication type:

Article

Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia.

Published in:

EMBO Journal, 2005, v. 24, n. 8, p. 1523, doi. 10.1038/sj.emboj.7600632

By:

Nakai, Tadashi;
Nakagawa, Noriko;
Maoka, Nobuko;
Masui, Ryoji;
Kuramitsu, Seiki;
Kamiya, Nobuo

Publication type:

Article

A putative adenosine kinase family protein possesses adenosine diphosphatase activity.

Published in:

Bioscience, Biotechnology & Biochemistry, 2016, v. 80, n. 11, p. 2138, doi. 10.1080/09168451.2016.1214532

By:

Tomoike, Fumiaki;
Tsunetou, Akiko;
Kim, Kwang;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

The role of ribonucleases in regulating global mRNA levels in the model organism Thermus thermophilus HB8.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-386

By:

Ohyama, Hiromasa;
Sakai, Tomofumi;
Agari, Yoshihiro;
Fukui, Kenji;
Nakagawa, Noriko;
Shinkai, Akeo;
Masui, Ryoji;
Kuramitsu, Seiki

Publication type:

Article

Proteome-wide identification of lysine propionylation in thermophilic and mesophilic bacteria: Geobacillus kaustophilus, Thermus thermophilus, Escherichia coli, Bacillus subtilis, and Rhodothermus marinus.

Published in:

Extremophiles, 2017, v. 21, n. 2, p. 283, doi. 10.1007/s00792-016-0901-3

By:

Okanishi, Hiroki;
Kim, Kwang;
Masui, Ryoji;
Kuramitsu, Seiki

Publication type:

Article

Roles of Mn-catalase and a possible heme peroxidase homologue in protection from oxidative stress in Thermus thermophilus.

Published in:

Extremophiles, 2015, v. 19, n. 4, p. 775, doi. 10.1007/s00792-015-0753-2

By:

Ebihara, Akio;
Manzoku, Miho;
Fukui, Kenji;
Shimada, Atsuhiro;
Morita, Rihito;
Masui, Ryoji;
Kuramitsu, Seiki

Publication type:

Article

Unique substrate specificity of purine nucleoside phosphorylases from Thermus thermophilus.

Published in:

Extremophiles, 2013, v. 17, n. 3, p. 505, doi. 10.1007/s00792-013-0535-7

By:

Tomoike, Fumiaki;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Insights into different dependence of dNTP triphosphohydrolase on metal ion species from intracellular ion concentrations in Thermus thermophilus.

Published in:

Extremophiles, 2008, v. 12, n. 2, p. 217, doi. 10.1007/s00792-007-0118-6

By:

Kondo, Naoyuki;
Nishikubo, Takashi;
Wakamatsu, Taisuke;
Ishikawa, Hirohito;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Structural and biochemical characterizations of Thermus thermophilus HB8 transketolase producing a heptulose.

Published in:

Applied Microbiology & Biotechnology, 2023, v. 107, n. 1, p. 233, doi. 10.1007/s00253-022-12297-z

By:

Yoshihara, Akihide;
Takamatsu, Yota;
Mochizuki, Susumu;
Yoshida, Hiromi;
Masui, Ryoji;
Izumori, Ken;
Kamitori, Shigehiro

Publication type:

Article

Application of Bis(terpyridine)ruthenium(II) to N-Terminal Amino Acid Sequencing.

Published in:

Chemistry Letters, 2005, v. 34, n. 3, p. 332, doi. 10.1246/cl.2005.332

By:

Okamura, Taka-aki;
Iwamura, Taku;
Ito, Akihiro;
Kaneko, Maki;
Yamaguchi, Minoru;
Yamamoto, Hitoshi;
Ueyama, Norikazu;
Kuyama, Hiroki;
Ando, Eiji;
Norioka, Shigemi;
Nakazawa, Takashi;
Masui, Ryoji;
Kuramitsu, Seiki

Publication type:

Article

Crystal Structure of TTHA0252 from Thermus thermophilus HB8, a RNA Degradation Protein of the Metallo-β-lactamase Superfamily.

Published in:

Journal of Biochemistry, 2006, v. 140, n. 4, p. 535, doi. 10.1093/jb/mvj183

By:

Ishikawa, Hirohito;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Novel Reaction Mechanism of GTP Cyclohydrolase I. High-Resolution X-Ray Crystallography of Thermus thermophilus HB8 Enzyme Complexed with a Transition State Analogue, the 8-Oxoguanine Derivative.

Published in:

Journal of Biochemistry, 2005, v. 138, n. 3, p. 263, doi. 10.1093/jb/mvi120

By:

Tanaka, Yoko;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Yokoyama, Shigeyuki;
Masui, Ryoji

Publication type:

Article

A Novel Metal-Activated l-Serine O-Acetyltransferase from Thermus thermophilus HB8.

Published in:

Journal of Biochemistry, 2004, v. 136, n. 5, p. 629, doi. 10.1093/jb/mvh170

By:

Kobayashi, Shin-ichiro;
Masui, Ryoji;
Yokoyama, Shigeyuki;
Kuramitsu, Seiki;
Takagi, Hiroshi

Publication type:

Article

Biochemical Characterization of TT1383 from Thermus thermophilus Identifies a Novel dNTP Triphosphohydrolase Activity Stimulated by dATP and dTTP.

Published in:

Journal of Biochemistry, 2004, v. 136, n. 2, p. 221, doi. 10.1093/jb/mvh115

By:

Kondo, Naoyuki;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Thermus thermophilus MutS2, a MutS Paralogue, Possesses an Endonuclease Activity Promoted by MutL.

Published in:

Journal of Biochemistry, 2004, v. 135, n. 3, p. 375, doi. 10.1093/jb/mvh045

By:

Fukui, Kenji;
Masui, Ryoji;
Kuramitsu, Seiki

Publication type:

Article

Crystal Structure of Thermus thermophilus HB8 UvrB Protein, a Key Enzyme of Nucleotide Excision Repair1.

Published in:

Journal of Biochemistry, 1999, v. 126, n. 6, p. 986, doi. 10.1093/oxfordjournals.jbchem.a022566

By:

Nakagawa, Noriko;
Sugahara, Mitsuaki;
Masui, Ryoji;
Kato, Ryuichi;
Fukuyama, Keiichi;
Kuramitsu, Seiki

Publication type:

Article

RecA Protein Has Extremely High Cooperativity for Substrate in Its ATPase Activity1.

Published in:

Journal of Biochemistry, 1998, v. 123, n. 3, p. 450, doi. 10.1093/oxfordjournals.jbchem.a021958

By:

Mikawa, Tsutomu;
Masui, Ryoji;
Kuramitsu, Seiki

Publication type:

Article

An Aspartate Aminotransferase from an Extremely Thermophilic Bacterium, Thermus thermophilus HB81.

Published in:

Journal of Biochemistry, 1996, v. 119, n. 1, p. 135, doi. 10.1093/oxfordjournals.jbchem.a021198

By:

Okamoto, Akihiro;
Kato, Ryuichi;
Masui, Ryoji;
Yamagishi, Akihiko;
Oshima, Tairo;
Kuramitsu, Seiki

Publication type:

Article

Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1154, doi. 10.1093/bioinformatics/bti071

By:

Shuhei Kimura;
Kaori Ide;
Aiko Kashihara;
Makoto Kano;
Mariko Hatakeyama;
Ryoji Masui;
Noriko Nakagawa;
Shigeyuki Yokoyama;
Seiki Kuramitsu;
Akihiko Konagaya

Publication type:

Article

Characterization of C- and N-terminal domains of Aquifex aeolicus MutL endonuclease: N-terminal domain stimulates the endonuclease activity of C-terminal domain in a zinc-dependent manner.

Published in:

Bioscience Reports, 2011, v. 31, n. 5, p. 309, doi. 10.1042/BSR20100116

By:

IINO, Hitoshi;
KIM, Kwang;
SHIMADA, Atsuhiro;
MASUI, Ryoji;
KURAMITSU, Seiki;
FUKUI, Kenji

Publication type:

Article

An alkyltransferase-like protein from Thermus thermophilus HB8 affects the regulation of gene expression in alkylation response.

Published in:

Journal of Biochemistry, 2011, v. 150, n. 3, p. 327, doi. 10.1093/jb/mvr052

By:

Morita, Rihito;
Hishinuma, Hisahiro;
Ohyama, Hiromasa;
Mega, Ryosuke;
Ohta, Toshihiro;
Nakagawa, Noriko;
Agari, Yoshihiro;
Fukui, Kenji;
Shinkai, Akeo;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

An O6-methylguanine-DNA Methyltransferase-like Protein from Thermus thermophilus Interacts with a Nucleotide Excision Repair Protein.

Published in:

Journal of Biochemistry, 2008, v. 144, n. 2, p. 267, doi. 10.1093/jb/mvn065

By:

Morita, Rihito;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Whole-cell proteome reference maps of an extreme thermophile, Thermus thermophilus HB8.

Published in:

Proteomics, 2012, v. 12, n. 19/20, p. 3063, doi. 10.1002/pmic.201100375

By:

Kim, Kwang;
Okanishi, Hiroki;
Masui, Ryoji;
Harada, Akira;
Ueyama, Norikazu;
Kuramitsu, Seiki

Publication type:

Article

Close proximity of phosphorylation sites to ligand in the phosphoproteome of the extreme thermophile Thermus thermophilus HB8.

Published in:

Proteomics, 2012, v. 12, n. 9, p. 1414, doi. 10.1002/pmic.201100573

By:

Takahata, Yoshio;
Inoue, Masao;
Kim, Kwang;
Iio, Yota;
Miyamoto, Masaaki;
Masui, Ryoji;
Ishihama, Yasushi;
Kuramitsu, Seiki

Publication type:

Article

A novel single-stranded DNA-specific 3′–5′ exonuclease, Thermus thermophilus exonuclease I, is involved in several DNA repair pathways.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. 5692, doi. 10.1093/nar/gkq350

By:

Shimada, Atsuhiro;
Masui, Ryoji;
Nakagawa, Noriko;
Takahata, Yoshio;
Kim, Kwang;
Kuramitsu, Seiki;
Fukui, Kenji

Publication type:

Article

Structural changes induced by ligand binding drastically increase the thermostability of the Ser/Thr protein kinase TpkD from Thermus thermophilus HB8.

Published in:

FEBS Letters, 2021, v. 595, n. 2, p. 264, doi. 10.1002/1873-3468.13996

By:

Fujino, Yusuke;
Miyagawa, Takero;
Torii, Masayuki;
Inoue, Masao;
Fujii, Yuki;
Okanishi, Hiroki;
Kanai, Yoshikatsu;
Masui, Ryoji

Publication type:

Article

Crystal structure of the ligand-binding form of nanoRNase from Bacteroides fragilis, a member of the DHH/DHHA1 phosphoesterase family of proteins.

Published in:

FEBS Letters, 2013, v. 587, n. 16, p. 2669, doi. 10.1016/j.febslet.2013.06.053

By:

Uemura, Yuri;
Nakagawa, Noriko;
Wakamatsu, Taisuke;
Kim, Kwang;
Montelione, Gaetano Thomas;
Hunt, John Francis;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Structural genomics projects in Japan.

Published in:

Nature Structural Biology, 2000, v. 7, p. 943, doi. 10.1038/80712

By:

Yokoyama, Shigeyuki;
Hirota, Hiroshi;
Kigawa, Takanori;
Yabuki, Takashi;
Shirouzu, Mikako;
Terada, Takaho;
Ito, Yutaka;
Matsuo, Yo;
Kuroda, Yutaka;
Nishimura, Yoshifumi;
Kyogoku, Yoshimasa;
Miki, Kunio;
Masui, Ryoji;
Kuramitsu, Seiki

Publication type:

Article

Inactivation of the DNA Repair Genes mutS, mutL or the Anti-Recombination Gene mutS2 Leads to Activation of Vitamin B<sub>1</sub> Biosynthesis Genes.

Published in:

PLoS ONE, 2011, v. 6, n. 4, p. 1, doi. 10.1371/journal.pone.0019053

By:

Fukui, Kenji;
Wakamatsu, Taisuke;
Agari, Yoshihiro;
Masui, Ryoji;
Kuramitsu, Seiki

Publication type:

Article

The first crystal structure of an archaeal metallo-β-lactamase superfamily protein; ST1585 from Sulfolobus tokodaii.

Published in:

Proteins, 2010, v. 78, n. 10, p. 2399, doi. 10.1002/prot.22749

By:

Shimada, Atsuhiro;
Ishikawa, Hirohito;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Crystal structure of an archaeal cleavage and polyadenylation specificity factor subunit from Pyrococcus horikoshii.

Published in:

Proteins, 2010, v. 78, n. 10, p. 2395, doi. 10.1002/prot.22748

By:

Nishida, Yuya;
Ishikawa, Hirohito;
Baba, Seiki;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Crystal structure of the conserved hypothetical protein TTHA1606 from Thermus thermophilus HB8.

Published in:

Proteins, 2009, v. 76, n. 1, p. 244, doi. 10.1002/prot.22397

By:

Tomoike, Fumiaki;
Wakamatsu, Taisuke;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Crystal structure of a putative DNA methylase TTHA0409 from Thermus thermophilus HB8.

Published in:

Proteins, 2008, v. 73, n. 1, p. 259, doi. 10.1002/prot.22158

By:

Morita, Rihito;
Ishikawa, Hirohito;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

MutS stimulates the endonuclease activity of MutL in an ATP-hydrolysis-dependent manner.

Published in:

FEBS Journal, 2013, v. 280, n. 14, p. 3467, doi. 10.1111/febs.12344

By:

Shimada, Atsuhiro;
Kawasoe, Yoshitaka;
Hata, Yoshito;
Takahashi, Tatsuro S.;
Masui, Ryoji;
Kuramitsu, Seiki;
Fukui, Kenji

Publication type:

Article

A non-cold-inducible cold shock protein homolog mainly contributes to translational control under optimal growth conditions.

Published in:

FEBS Journal, 2012, v. 279, n. 6, p. 1014, doi. 10.1111/j.1742-4658.2012.08492.x

By:

Tanaka, Toshiko;
Mega, Ryosuke;
Kim, Kwang;
Shinkai, Akeo;
Masui, Ryoji;
Kuramitsu, Seiki;
Nakagawa, Noriko

Publication type:

Article

Two dNTP triphosphohydrolases from Pseudomonas aeruginosa possess diverse substrate specificities.

Published in:

FEBS Journal, 2009, v. 276, n. 12, p. 3211, doi. 10.1111/j.1742-4658.2009.07035.x

By:

Mega, Ryosuke;
Kondo, Naoyuki;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Role of alkyltransferase-like (ATL) protein in repair of methylated DNA lesions in Thermus thermophilus.

Published in:

Mutagenesis, 2011, v. 26, n. 2, p. 303, doi. 10.1093/mutage/geq093

By:

Onodera, Takefumi;
Morino, Kae;
Tokishita, Shin-ichi;
Morita, Rihito;
Masui, Ryoji;
Kuramitsu, Seiki;
Ohta, Toshihiro

Publication type:

Article

Crystal structures of a subunit of the formylglycinamide ribonucleotide amidotransferase, PurS, from Thermus thermophilus, Sulfolobus tokodaii and Methanocaldococcus jannaschii.

Published in:

Acta Crystallographica: Section F, Structural Biology Communications, 2016, v. 72, n. 8, p. 627, doi. 10.1107/S2053230X1600978X

By:

Watanabe, Yuzo;
Yanai, Hisaaki;
Kanagawa, Mayumi;
Suzuki, Sakiko;
Tamura, Satoko;
Okada, Kiyoshi;
Baba, Seiki;
Kumasaka, Takashi;
Agari, Yoshihiro;
Chen, Lirong;
Fu, Zheng-Qing;
Chrzas, John;
Wang, Bi-Cheng;
Nakagawa, Noriko;
Ebihara, Akio;
Masui, Ryoji;
Kuramitsu, Seiki;
Yokoyama, Shigeyuki;
Sampei, Gen-ichi;
Kawai, Gota

Publication type:

Article

The crystal structures of Thermus thermophilus CMP kinase complexed with a phosphoryl group acceptor and donor.

Published in:

PLoS ONE, 2020, v. 15, n. 5, p. 1, doi. 10.1371/journal.pone.0233689

By:

Mega, Ryosuke;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Structural and Biochemical Studies on the Reaction Mechanism of Uridine-Cytidine Kinase.

Published in:

Protein Journal, 2015, v. 34, n. 6, p. 411, doi. 10.1007/s10930-015-9636-8

By:

Tomoike, Fumiaki;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Lysine and arginine biosyntheses mediated by a common carrier protein in Sulfolobus.

Published in:

Nature Chemical Biology, 2013, v. 9, n. 4, p. 277, doi. 10.1038/nchembio.1200

By:

Ouchi, Takuya;
Tomita, Takeo;
Horie, Akira;
Yoshida, Ayako;
Takahashi, Kento;
Nishida, Hiromi;
Lassak, Kerstin;
Taka, Hikari;
Mineki, Reiko;
Fujimura, Tsutomu;
Kosono, Saori;
Nishiyama, Chiharu;
Masui, Ryoji;
Kuramitsu, Seiki;
Albers, Sonja-Verena;
Kuzuyama, Tomohisa;
Nishiyama, Makoto

Publication type:

Article

Molecular Mechanisms of the Whole DNA Repair System: A Comparison of Bacterial and Eukaryotic Systems.

Published in:

Journal of Nucleic Acids, 2010, p. 1, doi. 10.4061/2010/179594

By:

Morita, Rihito;
Nakane, Shuhei;
Shimada, Atsuhiro;
Inoue, Masao;
Iino, Hitoshi;
Wakamatsu, Taisuke;
Fukui, Kenji;
Nakagawa, Noriko;
Masui, Ryoji;
Kuramitsu, Seiki

Publication type:

Article

Crystal structure of hypothetical protein TTHB192 from Thermus thermophilus HB8 reveals a new protein family with an RNA recognition motif-like domain.

Published in:

Protein Science: A Publication of the Protein Society, 2006, v. 15, n. 6, p. 1494, doi. 10.1110/ps.062131106

By:

Ebihara, Akio;
Yao, Min;
Masui, Ryoji;
Tanaka, Isao;
Yokoyama, Shigeyuki;
Kuramitsu, Seiki

Publication type:

Article

Simultaneous detection of N-terminal fragment ions in a protein mixture using a ruthenium(II) complex.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2007, v. 21, n. 16, p. 2647, doi. 10.1002/rcm.3126

By:

Ito, Akihiro;
Okamura, Taka-aki;
Yamamoto, Hitoshi;
Ueyama, Norikazu;
Yamaguchi, Minoru;
Kuyama, Hiroki;
Ando, Eiji;
Tsunasawa, Susumu;
Ake, Kojiro;
Masui, Ryoji;
Kuramitsu, Seiki;
Nakazawa, Takashi;
Norioka, Shigemi

Publication type:

Article

Rapid SNP diagnostics using asymmetric isothermal amplification and a new mismatch-suppression technology.

Published in:

Nature Methods, 2007, v. 4, n. 3, p. 257, doi. 10.1038/nmeth1007

By:

Mitani, Yasumasa;
Lezhava, Alexander;
Kawai, Yuki;
Kikuchi, Takeshi;
Oguchi-Katayama, Atsuko;
Kogo, Yasushi;
Itoh, Masayoshi;
Miyagi, Toru;
Takakura, Hideki;
Hoshi, Kanako;
Kato, Chiaki;
Arakawa, Takahiro;
Shibata, Kazuhiro;
Fukui, Kenji;
Masui, Ryoji;
Kuramitsu, Seiki;
Kiyotani, Kazuma;
Chalk, Alistair;
Tsunekawa, Katsuhiko;
Murakami, Masami

Publication type:

Article