Works by Masci, Anna Maria

Results: 22

VIGET: A web portal for study of vaccine-induced host responses based on Reactome pathways and ImmPort data.

Published in:

Frontiers in Immunology, 2023, p. 1, doi. 10.3389/fimmu.2023.1141030

By:

Brunson, Timothy;
Sanati, Nasim;
Huffman, Anthony;
Maria Masci, Anna;
Jie Zheng;
Cooke, Michael F.;
Conley, Patrick;
Yongqun He;
Guanming Wu

Publication type:

Article

VIGET: A web portal for study of vaccine-induced host responses based on Reactome pathways and ImmPort data.

Published in:

Frontiers in Immunology, 2023, v. 14, p. 1, doi. 10.3389/fimmu.2023.1141030

By:

Brunson, Timothy;
Sanati, Nasim;
Huffman, Anthony;
Masci, Anna Maria;
Jie Zheng;
Cooke, Michael F.;
Conley, Patrick;
Yongqun He;
Guanming Wu

Publication type:

Article

Empowering standardization of cancer vaccines through ontology: enhanced modeling and data analysis.

Published in:

Journal of Biomedical Semantics, 2024, v. 15, n. 1, p. 1, doi. 10.1186/s13326-024-00312-3

By:

Zheng, Jie;
Li, Xingxian;
Masci, Anna Maria;
Kahn, Hayleigh;
Huffman, Anthony;
Asfaw, Eliyas;
Pan, Yuanyi;
Guo, Jinjing;
He, Virginia;
Song, Justin;
Seleznev, Andrey I.;
Lin, Asiyah Yu;
He, Yongqun

Publication type:

Article

Ontological representation, modeling, and analysis of parasite vaccines.

Published in:

Journal of Biomedical Semantics, 2024, v. 15, p. 1, doi. 10.1186/s13326-024-00307-0

By:

Huffman, Anthony;
Zhang, Xumeng;
Lanka, Meghana;
Zheng, Jie;
Masci, Anna Maria;
He, Yongqun

Publication type:

Article

CIDO ontology updates and secondary analysis of host responses to COVID-19 infection based on ImmPort reports and literature.

Published in:

Journal of Biomedical Semantics, 2021, v. 12, n. 1, p. 1, doi. 10.1186/s13326-021-00250-4

By:

Huffman, Anthony;
Masci, Anna Maria;
Zheng, Jie;
Sanati, Nasim;
Brunson, Timothy;
Wu, Guanming;
He, Yongqun

Publication type:

Article

OHMI: the ontology of host-microbiome interactions.

Published in:

Journal of Biomedical Semantics, 2019, v. 10, n. 1, p. 1, doi. 10.1186/s13326-019-0217-1

By:

He, Yongqun;
Wang, Haihe;
Zheng, Jie;
Beiting, Daniel P.;
Masci, Anna Maria;
Yu, Hong;
Liu, Kaiyong;
Wu, Jianmin;
Curtis, Jeffrey L.;
Smith, Barry;
Alekseyenko, Alexander V.;
Obeid, Jihad S.

Publication type:

Article

Comprehensive anatomic ontologies for lung development: A comparison of alveolar formation and maturation within mouse and human lung.

Published in:

Journal of Biomedical Semantics, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13326-019-0209-1

By:

Pan, Huaqin;
Deutsch, Gail H.;
Wert, Susan E.;
On behalf of the Ontology Subcommittee;
Ambalavanan, Namasivayam;
Ansong, Charles;
Ardini-Poleske, Maryanne E.;
Bagwell, Jacqueline;
Chan, Cliburn;
Frevert, Charles;
Gabriel, Davera;
Hagood, James S.;
Hill, Carol B.;
Holden-Wiltse, Jeanne;
Jegga, Anil G.;
Mariani, Thomas J.;
Masci, Anna Maria;
Shi, Wei;
Warburton, David;
A, Kathryn

Publication type:

Article

The Ontology of Biological and Clinical Statistics (OBCS) for standardized and reproducible statistical analysis.

Published in:

Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0100-2

By:

Jie Zheng;
Harris, Marcelline R.;
Masci, Anna Maria;
Yu Lin;
Hero, Alfred;
Smith, Barry;
Yongqun He

Publication type:

Article

OBIB-a novel ontology for biobanking.

Published in:

Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0068-y

By:

Brochhausen, Mathias;
Jie Zheng;
Birtwell, David;
Williams, Heather;
Masci, Anna Maria;
Ellis, Helena Judge;
Stoeckert Jr., Christian J.

Publication type:

Article

Logical Development of the Cell Ontology.

Published in:

BMC Bioinformatics, 2011, v. 12, n. 1, p. 1, doi. 10.1186/1471-2105-12-6

By:

Meehan, Terrence F.;
Masci, Anna Maria;
Abdulla, Amina;
Cowell, Lindsay G.;
Blake, Judith A.;
Mungall, Christopher J.;
Diehl, Alexander D.

Publication type:

Article

An improved ontological representation of dendritic cells as a paradigm for all cell types.

Published in:

BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-70

By:

Masci, Anna Maria;
Arighi, Cecilia N.;
Diehl, Alexander D.;
Lieberman, Anne E.;
Mungall, Chris;
Scheuermann, Richard H.;
Smith, Barry;
Cowell, Lindsay G.

Publication type:

Article

VaximmutorDB: A Web-Based Vaccine Immune Factor Database and Its Application for Understanding Vaccine-Induced Immune Mechanisms.

Published in:

Frontiers in Immunology, 2021, v. 11, p. N.PAG, doi. 10.3389/fimmu.2021.639491

By:

Berke, Kimberly;
Sun, Peter;
Ong, Edison;
Sanati, Nasim;
Huffman, Anthony;
Brunson, Timothy;
Loney, Fred;
Ostrow, Joseph;
Racz, Rebecca;
Zhao, Bin;
Xiang, Zuoshuang;
Masci, Anna Maria;
Zheng, Jie;
Wu, Guanming;
He, Yongqun

Publication type:

Article

Protein Ontology: a controlled structured network of protein entities.

Published in:

Nucleic Acids Research, 2014, v. 42, n. D1, p. D415, doi. 10.1093/nar/gkt1173

By:

Natale, Darren A.;
Arighi, Cecilia N.;
Blake, Judith A.;
Bult, Carol J.;
Christie, Karen R.;
Cowart, Julie;
D’Eustachio, Peter;
Diehl, Alexander D.;
Drabkin, Harold J.;
Helfer, Olivia;
Huang, Hongzhan;
Masci, Anna Maria;
Ren, Jia;
Roberts, Natalia V.;
Ross, Karen;
Ruttenberg, Alan;
Shamovsky, Veronica;
Smith, Barry;
Yerramalla, Meher Shruti;
Zhang, Jian

Publication type:

Article

Correction: Toll-Like Receptor Signaling in Vertebrates: Testing the Integration of Protein, Complex, and Pathway Data in the Protein Ontology Framework.

Published in:

PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0131148

By:

Arighi, Cecilia;
Shamovsky, Veronica;
Masci, Anna Maria;
Ruttenberg, Alan;
Smith, Barry;
Natale, Darren A.;
Wu, Cathy;
D’Eustachio, Peter

Publication type:

Article

Toll-Like Receptor Signaling in Vertebrates: Testing the Integration of Protein, Complex, and Pathway Data in the Protein Ontology Framework.

Published in:

PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0122978

By:

Arighi, Cecilia;
Shamovsky, Veronica;
Masci, Anna Maria;
Ruttenberg, Alan;
Smith, Barry;
Natale, Darren A.;
Wu, Cathy;
D’Eustachio, Peter

Publication type:

Article

Phylogeny of Toll-Like Receptor Signaling: Adapting the Innate Response.

Published in:

PLoS ONE, 2013, v. 8, n. 1, p. 1, doi. 10.1371/journal.pone.0054156

By:

Roach, Jeffrey M.;
Racioppi, Luigi;
Jones, Corbin D.;
Masci, Anna Maria

Publication type:

Article

Dendritic Cells/Natural Killer Cross-Talk: A Novel Target for Human Immunodeficiency Virus Type-1 Protease Inhibitors.

Published in:

PLoS ONE, 2010, v. 5, n. 6, p. 1, doi. 10.1371/journal.pone.0011052

By:

Giardino Torchia, Maria Letizia;
Ciaglia, Elena;
Masci, Anna Maria;
Vitiello, Laura;
Fogli, Manuela;
Andreèla Sala;
Mavilio, Domenico;
Racioppi, Luigi

Publication type:

Article

Modulation of CD45 tyrosine phosphatase activity by antigen.

Published in:

European Journal of Immunology, 2001, v. 31, n. 3, p. 777, doi. 10.1002/1521-4141(200103)31:3<777::AID-IMMU777>3.0.CO;2-I

By:

Lago Paz, Francisca;
Galgani, Mario;
D'Oro, Ugo;
Matarese, Giuseppe;
Masci, Anna Maria;
Zappacosta, Serafino;
Racioppi, Luigi

Publication type:

Article

Effects of human immunodeficiency virus type 1 on CD4 lymphocyte subset activation.

Published in:

European Journal of Immunology, 1999, v. 29, n. 6, p. 1879, doi. 10.1002/(SICI)1521-4141(199906)29:06<1879::AID-IMMU1879>3.0.CO;2-2

By:

Masci, Anna Maria;
Lago Paz, Francisca;
Borriello, Adriana;
Cassano, Silvana;
Della Pietra, Valentina;
Stoiber, Heribert;
Matarese, Giuseppe;
Della Ragione, Fulvio;
Zappacosta, Serafino;
Racioppi, Luigi

Publication type:

Article

CaMKK2 in myeloid cells is a key regulator of the immune-suppressive microenvironment in breast cancer.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-10424-5

By:

Racioppi, Luigi;
Nelson, Erik R.;
Huang, Wei;
Mukherjee, Debarati;
Lawrence, Scott A.;
Lento, William;
Masci, Anna Maria;
Jiao, Yiquin;
Park, Sunghee;
York, Brian;
Liu, Yaping;
Baek, Amy E.;
Drewry, David H.;
Zuercher, William J.;
Bertani, Francesca R.;
Businaro, Luca;
Geradts, Joseph;
Hall, Allison;
Means, Anthony R.;
Chao, Nelson

Publication type:

Article

Mucosal and Systemic Immune Activation Is Present in Human Immunodeficiency Virus-Exposed...

Published in:

Journal of Infectious Diseases, 2000, v. 182, n. 5, p. 1365, doi. 10.1086/315873

By:

Biasin, Mara;
Caputo, Sergio Lo;
Speciale, Livianna;
Colombo, Fulvia;
Racioppi, Luigi;
Zagliani, Arianna;
Ble, Claudio;
Vichi, Francesca;
Cianferoni, Luciano;
Masci, Anna Maria;
Villa, Maria Luisa;
Ferrante, Pasquale;
Mazzotta, Francesco;
Clerici, Mario

Publication type:

Article

Ontology-guided segmentation and object identification for developmental mouse lung immunofluorescent images.

Published in:

BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04008-8

By:

Masci, Anna Maria;
White, Scott;
Neely, Ben;
Ardini-Polaske, Maryanne;
Hill, Carol B.;
Misra, Ravi S.;
Aronow, Bruce;
Gaddis, Nathan;
Yang, Lina;
Wert, Susan E.;
Palmer, Scott M.;
Chan, Cliburn

Publication type:

Article