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Deciphering the Genetic Architecture of Plant Virus Resistance by GWAS, State of the Art and Potential Advances.
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- Cells (2073-4409), 2021, v. 10, n. 11, p. 3080, doi. 10.3390/cells10113080
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- Article
Increased Susceptibility to Obesity and Glucose Intolerance in Adult Female Rats Programmed by High-Protein Diet during Gestation, But Not during Lactation.
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- Nutrients, 2020, v. 12, n. 2, p. 315, doi. 10.3390/nu12020315
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- Article
High protein diet during gestation influences female pups response to dietary challenge in adulthood (LB319).
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- FASEB Journal, 2014, v. 28, p. N.PAG, doi. 10.1096/fasebj.28.1_supplement.lb319
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Advances in Breeding for Mixed Cropping – Incomplete Factorials and the Producer/Associate Concept.
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- Frontiers in Plant Science, 2021, v. 11, p. N.PAG, doi. 10.3389/fpls.2020.620400
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- Article
Deciphering the Genetic Diversity of Landraces With High-Throughput SNP Genotyping of DNA Bulks: Methodology and Application to the Maize 50k Array.
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- Frontiers in Plant Science, 2021, v. 11, p. N.PAG, doi. 10.3389/fpls.2020.568699
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- Article
Estimating the Number of Block Boundaries from Diagonal Blockwise Matrices Without Penalization.
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- Scandinavian Journal of Statistics, 2017, v. 44, n. 2, p. 563, doi. 10.1111/sjos.12266
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- Article
MultiChIPmixHMM: an R package for ChIP-chip data analysis modeling spatial dependencies and multiple replicates.
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- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-271
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- Article
Efficient ReML inference in variance component mixed models using a Min-Max algorithm.
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- PLoS Computational Biology, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pcbi.1009659
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- Article
Detecting directional and non-directional epistasis in bi-parental populations using genomic data.
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- Genetics, 2023, v. 224, n. 3, p. 1, doi. 10.1093/genetics/iyad089
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Improving genomic predictions with inbreeding and nonadditive effects in two admixed maize hybrid populations in single and multienvironment contexts.
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- Genetics, 2022, v. 220, n. 4, p. 1, doi. 10.1093/genetics/iyac018
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- Article
Accounting for Group-Specific Allele Effects and Admixture in Genomic Predictions: Theory and Experimental Evaluation in Maize.
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- Genetics, 2020, v. 216, n. 1, p. 27, doi. 10.1534/genetics.120.303278
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- Article
Recovering Power in Association Mapping Panels with Variable Levels of Linkage Disequilibrium.
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- Genetics, 2014, v. 197, n. 1, p. 375, doi. 10.1534/genetics.113.159731
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- Article
The INCREASE project: Intelligent Collections of food‐legume genetic resources for European agrofood systems.
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- Plant Journal, 2021, v. 108, n. 3, p. 646, doi. 10.1111/tpj.15472
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- Article
SegCorr a statistical procedure for the detection of genomic regions of correlated expression.
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- BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1742-5
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- Article
Genotyping of DNA pools identifies untapped landraces and genomic regions to develop next‐generation varieties.
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- Plant Biotechnology Journal, 2023, v. 21, n. 6, p. 1123, doi. 10.1111/pbi.14022
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- Article
Statistical methodology for the analysis of dye-switch microarray experiments.
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- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-98
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Spotting effect in microarray experiments.
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- BMC Bioinformatics, 2004, v. 5, p. 63, doi. 10.1186/1471-2105-5-63
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Population transcriptomics: insights from Drosophila simulans, Drosophila sechellia and their hybrids.
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- Genetica, 2011, v. 139, n. 4, p. 465, doi. 10.1007/s10709-011-9566-0
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Methods to estimate effective population size using pedigree data: Examples in dog, sheep, cattle and horse.
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- Genetics Selection Evolution, 2013, v. 45, n. 1, p. 1, doi. 10.1186/1297-9686-45-1
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Querying multiple sets of P-values through composed hypothesis testing.
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- Bioinformatics, 2022, v. 38, n. 1, p. 141, doi. 10.1093/bioinformatics/btab592
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- Article
Genomic prediction for grain yield and micro-environmental sensitivity in winter wheat.
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- Frontiers in Plant Science, 2023, v. 14, p. 1, doi. 10.3389/fpls.2022.1075077
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- Article
Variation of Gene Expression Associated with Colonisation of an Anthropized Environment: Comparison between African and European Populations of <i>Drosophila simulans</i>.
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- PLoS ONE, 2013, v. 8, n. 11, p. 1, doi. 10.1371/journal.pone.0079750
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Estimation of the relatedness coefficients from biallelic markers, application in plant mating designs.
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- Biometrics, 2017, v. 73, n. 3, p. 885, doi. 10.1111/biom.12634
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- Article
Disentangling group specific QTL allele effects from genetic background epistasis using admixed individuals in GWAS: An application to maize flowering.
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- PLoS Genetics, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pgen.1008241
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- Article
Theoretical Analysis of Cross-Validation for Estimating the Risk of the k-Nearest Neighbor Classiffier.
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- Journal of Machine Learning Research, 2018, v. 19, n. 56-84, p. 1
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- Article
Integrative epigenomic mapping defines four main chromatin states in Arabidopsis.
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- EMBO Journal, 2011, v. 30, n. 10, p. 1928, doi. 10.1038/emboj.2011.103
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Sequence analysis of European maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants.
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- BMC Genomics, 2018, v. 19, p. 1, doi. 10.1186/s12864-018-4490-7
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Fast and accurate joint inference of coancestry parameters for populations and/or individuals.
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- PLoS Genetics, 2023, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1010054
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GEM2Net: from gene expression modeling to -omics networks, a new CATdb module to investigate Arabidopsis thaliana genes involved in stress response.
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- Nucleic Acids Research, 2015, v. 43, n. D1, p. D1010, doi. 10.1093/nar/gku1155
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- Article
High-dimensional multi-omics measured in controlled conditions are useful for maize platform and field trait predictions.
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- Theoretical & Applied Genetics, 2024, v. 137, n. 7, p. 1, doi. 10.1007/s00122-024-04679-w
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- Article
Portability of genomic predictions trained on sparse factorial designs across two maize silage breeding cycles.
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- Theoretical & Applied Genetics, 2024, v. 137, n. 3, p. 1, doi. 10.1007/s00122-024-04566-4
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Assessing the potential of genetic resource introduction into elite germplasm: a collaborative multiparental population for flint maize.
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- Theoretical & Applied Genetics, 2024, v. 137, n. 1, p. 1, doi. 10.1007/s00122-023-04509-5
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Identifying QTLs involved in hybrid performance and heterotic group complementarity: new GWAS models applied to factorial and admixed diallel maize hybrid panels.
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- Theoretical & Applied Genetics, 2023, v. 136, n. 11, p. 1, doi. 10.1007/s00122-023-04431-w
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- Article
Phenomic selection in wheat breeding: prediction of the genotype-by-environment interaction in multi-environment breeding trials.
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- Theoretical & Applied Genetics, 2022, v. 135, n. 10, p. 3337, doi. 10.1007/s00122-022-04170-4
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Genomic prediction of hybrid performance: comparison of the efficiency of factorial and tester designs used as training sets in a multiparental connected reciprocal design for maize silage.
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- Theoretical & Applied Genetics, 2022, v. 135, n. 9, p. 3143, doi. 10.1007/s00122-022-04176-y
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Genomic selection efficiency and a priori estimation of accuracy in a structured dent maize panel.
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- Theoretical & Applied Genetics, 2019, v. 132, n. 1, p. 81, doi. 10.1007/s00122-018-3196-1
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ChIPmix: mixture model of regressions for two-color ChIP-chip analysis.
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- Bioinformatics, 2008, v. 24, n. 16, p. i181, doi. 10.1093/bioinformatics/btn280
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Biases induced by pooling samples in microarray experiments.
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- Bioinformatics, 2007, v. 23, n. 13, p. i313, doi. 10.1093/bioinformatics/btm182
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- Article
Subclinical endometritis in dairy cattle is associated with distinct mRNA expression patterns in blood and endometrium.
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- PLoS ONE, 2019, v. 14, n. 8, p. 1, doi. 10.1371/journal.pone.0220244
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ExactDAS: An Exact Test Procedure for the Detection of Differential Alternative Splicing in Microarray Experiments.
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- Statistical Applications in Genetics & Molecular Biology, 2012, v. 11, n. 5, p. -1, doi. 10.1515/1544-6115.1814
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Independent introductions and admixtures have contributed to adaptation of European maize and its American counterparts.
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- PLoS Genetics, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pgen.1006666
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- Article
Novel Cytonuclear Combinations Modify Arabidopsis thaliana Seed Physiology and Vigor.
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- Frontiers in Plant Science, 2019, p. N.PAG, doi. 10.3389/fpls.2019.00032
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- Article
Error rate control for classification rules in multiclass mixture models.
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- International Journal of Biostatistics, 2022, v. 18, n. 2, p. 381, doi. 10.1515/ijb-2020-0105
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- Article