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Exploring the metabolic network of the epidemic pathogen Burkholderia cenocepacia J2315 via genome-scale reconstruction.
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- BMC Systems Biology, 2011, v. 5, n. 1, p. 83, doi. 10.1186/1752-0509-5-83
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- Article
Regulation of Three Virulence Strategies of Mycobacterium tuberculosis: A Success Story.
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- International Journal of Molecular Sciences, 2018, v. 19, n. 2, p. 347, doi. 10.3390/ijms19020347
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- Article
Phenotype and multi-omics comparison of Staphylococcus and Streptococcus uncovers pathogenic traits and predicts zoonotic potential.
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- BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-07388-6
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- Article
High-level integration of murine intestinal transcriptomics data highlights the importance of the complement system in mucosal homeostasis.
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- BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6390-x
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- Article
The Empusa code generator and its application to GBOL, an extendable ontology for genome annotation.
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- Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0263-7
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- Article
A genetic toolkit and gene switches to limit Mycoplasma growth for biosafety applications.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29574-0
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- Article
Combinatorial optimization of pathway, process and media for the production of p‐coumaric acid by Saccharomyces cerevisiae.
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- Microbial Biotechnology, 2024, v. 17, n. 3, p. 1, doi. 10.1111/1751-7915.14424
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- Article
Pseudomonas putida as a platform for medium‐chain length α,ω‐diol production: Opportunities and challenges.
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- Microbial Biotechnology, 2024, v. 17, n. 3, p. 1, doi. 10.1111/1751-7915.14423
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- Article
Enzyme‐constrained models predict the dynamics of Saccharomyces cerevisiae growth in continuous, batch and fed‐batch bioreactors.
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- Microbial Biotechnology, 2022, v. 15, n. 5, p. 1434, doi. 10.1111/1751-7915.13995
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- Article
SEVA 3.1: enabling interoperability of DNA assembly among the SEVA, BioBricks and Type IIS restriction enzyme standards.
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- Microbial Biotechnology, 2020, v. 13, n. 6, p. 1793, doi. 10.1111/1751-7915.13609
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- Article
Pseudomonas putida KT2440 is HV1 certified, not GRAS.
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- Microbial Biotechnology, 2019, v. 12, n. 5, p. 845, doi. 10.1111/1751-7915.13443
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- Article
Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis.
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- Nature Biotechnology, 2006, v. 24, n. 8, p. 997, doi. 10.1038/nbt1232
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- Article
Correction to: Phenotype and multi-omics comparison of Staphylococcus and Streptococcus uncovers pathogenic traits and predicts zoonotic potential.
- Published in:
- 2021
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- Publication type:
- Correction Notice
Relevance of rheological properties of gel beads for their mechanical stability in bioreactors.
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- Biotechnology & Bioengineering, 1997, v. 56, n. 5, p. 517, doi. 10.1002/(SICI)1097-0290(19971205)56:5<517::AID-BIT5>3.0.CO;2-L
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- Article
Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data.
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- Scientific Reports, 2016, p. 38699, doi. 10.1038/srep38699
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- Publication type:
- Article
RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource.
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- Journal of Biomedical Semantics, 2015, v. 6, p. 1, doi. 10.1186/s13326-015-0038-9
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- Article
Assessing the Metabolic Diversity of Streptococcus from a Protein Domain Point of View.
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- PLoS ONE, 2015, v. 10, n. 9, p. 1, doi. 10.1371/journal.pone.0137908
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- Article
A Multi-Platform Flow Device for Microbial (Co-) Cultivation and Microscopic Analysis.
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- PLoS ONE, 2012, v. 7, n. 5, p. 1, doi. 10.1371/journal.pone.0036982
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- Article
(Re-)construction, characterization and modeling of systems for synthetic biology.
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- Biotechnology Journal, 2009, v. 4, n. 10, p. 1382, doi. 10.1002/biot.200900173
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- Article
3DM: Systematic analysis of heterogeneous superfamily data to discover protein functionalities.
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- Proteins, 2010, v. 78, n. 9, p. 2101, doi. 10.1002/prot.22725
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- Article
Bacterial consortium proteomics under 4-chlorosalicylate carbon-limiting conditions.
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- Proteomics, 2009, v. 9, n. 8, p. 2273, doi. 10.1002/pmic.200800489
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- Article
Metabolic modeling of energy balances in Mycoplasma hyopneumoniae shows that pyruvate addition increases growth rate.
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- Biotechnology & Bioengineering, 2017, v. 114, n. 10, p. 2339, doi. 10.1002/bit.26347
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- Article
Exploring the Impact of Tensions in Stakeholder Norms on Designing for Value Change: The Case of Biosafety in Industrial Biotechnology.
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- Science & Engineering Ethics, 2023, v. 29, n. 2, p. 1, doi. 10.1007/s11948-023-00432-6
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- Article
Distant Non-Obvious Mutations Influence the Activity of a Hyperthermophilic Pyrococcusfuriosus Phosphoglucose Isomerase.
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- Biomolecules (2218-273X), 2019, v. 9, n. 6, p. 212, doi. 10.3390/biom9060212
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- Article
Macrophage-Specific NF-κB Activation Dynamics Can Segregate Inflammatory Bowel Disease Patients.
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- Frontiers in Immunology, 2019, p. 1, doi. 10.3389/fimmu.2019.02168
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- Article
Identification and functional characterization of novel xylose transporters from the cell factories Aspergillus niger and Trichoderma reesei.
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- Biotechnology for Biofuels, 2016, v. 9, p. 1, doi. 10.1186/s13068-016-0564-4
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- Publication type:
- Article
Recommended strategies for spectral processing and post-processing of 1D <sup>1</sup>H-NMR data of biofluids with a particular focus on urine.
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- Metabolomics, 2018, v. 14, n. 3, p. 0, doi. 10.1007/s11306-018-1321-4
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- Article
From correlation to causation: analysis of metabolomics data using systems biology approaches.
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- Metabolomics, 2018, v. 14, n. 4, p. 1, doi. 10.1007/s11306-018-1335-y
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- Publication type:
- Article
DMPy: a Python package for automated mathematical model construction of large-scale metabolic systems.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0584-8
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- Article
SALARECON connects the Atlantic salmon genome to growth and feed efficiency.
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- PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010194
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- Article
GenoMine: a CRISPR-Cas9-based kill switch for biocontainment of Pseudomonas putida.
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- Frontiers in Bioengineering & Biotechnology, 2024, p. 1, doi. 10.3389/fbioe.2024.1426107
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- Article
Uracil content of 16S rRNA of thermophilic and psychrophilic prokaryotes correlates inversely with their optimal growth temperatures.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4016, doi. 10.1093/nar/gki714
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- Article
Design and analysis of a tunable synchronized oscillator.
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- Journal of Biological Engineering, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1754-1611-7-26
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- Article
Patient's characteristics and outcomes in necrotising soft-tissue infections: results from a Scandinavian, multicentre, prospective cohort study.
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- 2019
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- Publication type:
- journal article
Dissecting the energy metabolism in Mycoplasma pneumoniae through genome-scale metabolic modeling.
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- Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.6
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- Article
Reconciliation of Genome-Scale Metabolic Reconstructions for Comparative Systems Analysis.
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- PLoS Computational Biology, 2011, v. 7, n. 3, p. 1, doi. 10.1371/journal.pcbi.1001116
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- Article
Discriminatory plasma biomarkers predict specific clinical phenotypes of necrotizing soft-tissue infections.
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- 2021
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- Publication type:
- journal article
Identification of genes associated with the high-temperature fermentation trait in the Saccharomyces cerevisiae natural isolate BCC39850.
- Published in:
- Archives of Microbiology, 2024, v. 206, n. 10, p. 1, doi. 10.1007/s00203-024-04117-x
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- Publication type:
- Article
Impact of Interleukin 10 Deficiency on Intestinal Epithelium Responses to Inflammatory Signals.
- Published in:
- Frontiers in Immunology, 2021, v. 12, p. 1, doi. 10.3389/fimmu.2021.690817
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- Article
Modeling the Metabolic State of Mycobacterium tuberculosis Upon Infection.
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- Frontiers in Cellular & Infection Microbiology, 2018, v. 8, p. N.PAG, doi. 10.3389/fcimb.2018.00264
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- Article
Persistence of Functional Protein Domains in Mycoplasma Species and their Role in Host Specificity and Synthetic Minimal Life.
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- Frontiers in Cellular & Infection Microbiology, 2017, v. 7, p. 1, doi. 10.3389/fcimb.2017.00031
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- Article
The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis.
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- Environmental Microbiology, 2016, v. 18, n. 10, p. 3403, doi. 10.1111/1462-2920.13230
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- Article
Protoanemonin: a natural quorum sensing inhibitor that selectively activates iron starvation response.
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- Environmental Microbiology, 2013, v. 15, n. 1, p. 111, doi. 10.1111/j.1462-2920.2012.02792.x
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- Publication type:
- Article
Random and cyclical deletion of large DNA segments in the genome of Pseudomonas putida.
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- Environmental Microbiology, 2012, v. 14, n. 6, p. 1444, doi. 10.1111/j.1462-2920.2012.02730.x
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- Publication type:
- Article
Consortia modulation of the stress response: proteomic analysis of single strain versus mixed culture.
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- Environmental Microbiology, 2010, v. 12, n. 9, p. 2436, doi. 10.1111/j.1462-2920.2010.02217.x
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- Publication type:
- Article
The regulatory logic of m-xylene biodegradation by Pseudomonas putida mt-2 exposed by dynamic modelling of the principal node Ps/Pr of the TOL plasmid.
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- Environmental Microbiology, 2010, v. 12, n. 6, p. 1705, doi. 10.1111/j.1462-2920.2010.02245.x
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- Article
Novel hydrolase diversity retrieved from a metagenome library of bovine rumen microflora.
- Published in:
- Environmental Microbiology, 2005, v. 7, n. 12, p. 1996, doi. 10.1111/j.1462-2920.2005.00920.x
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- Publication type:
- Article
Studying microbial functionality within the gut ecosystem by systems biology.
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- Genes & Nutrition, 2018, v. 13, p. 1, doi. 10.1186/s12263-018-0594-6
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- Publication type:
- Article
Increasing cellular fitness and product yields in Pseudomonas putida through an engineered phosphoketolase shunt.
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- Microbial Cell Factories, 2023, v. 22, n. 1, p. 1, doi. 10.1186/s12934-022-02015-9
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- Publication type:
- Article
Tailoring and optimizing fatty acid production by oleaginous yeasts through the systematic exploration of their physiological fitness.
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- Microbial Cell Factories, 2022, v. 21, n. 1, p. 1, doi. 10.1186/s12934-022-01956-5
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- Article