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Metagenomics reveals the structure of Mastrevirus–host interaction network within an agro-ecosystem.
- Published in:
- Virus Evolution, 2023, v. 9, n. 2, p. 1, doi. 10.1093/ve/vead043
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- Publication type:
- Article
Evolution of anelloviruses from a circovirus-like ancestor through gradual augmentation of the jelly-roll capsid protein.
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- Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead035
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- Publication type:
- Article
RASCL: Rapid Assessment of Selection in CLades through molecular sequence analysis.
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- PLoS ONE, 2022, v. 17, n. 11, p. 1, doi. 10.1371/journal.pone.0275623
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- Article
Conserved recombination patterns across coronavirus subgenera.
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- Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac054
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- Publication type:
- Article
Detection of SARS-CoV-2 intra-host recombination during superinfection with Alpha and Epsilon variants in New York City.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31247-x
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- Article
Recent Zoonotic Spillover and Tropism Shift of a Canine Coronavirus Is Associated with Relaxed Selection and Putative Loss of Function in NTD Subdomain of Spike Protein.
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- Viruses (1999-4915), 2022, v. 14, n. 5, p. 853, doi. 10.3390/v14050853
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- Publication type:
- Article
Emergence and phenotypic characterization of the global SARS-CoV-2 C.1.2 lineage.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29579-9
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- Publication type:
- Article
Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function.
- Published in:
- Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac061
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- Publication type:
- Article
Establishment of five new genera in the family Geminiviridae: Citlodavirus, Maldovirus, Mulcrilevirus, Opunvirus, and Topilevirus.
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- Archives of Virology, 2022, v. 167, n. 2, p. 695, doi. 10.1007/s00705-021-05309-2
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- Article
Taxonomy update for the family Alphasatellitidae: new subfamily, genera, and species.
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- Archives of Virology, 2021, v. 166, n. 12, p. 3503, doi. 10.1007/s00705-021-05232-6
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- Article
Ready-to-use public infrastructure for global SARS-CoV-2 monitoring.
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- 2021
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- Publication type:
- Letter
Identification of the Begomoviruses Squash Leaf Curl Virus and Watermelon Chlorotic Stunt Virus in Various Plant Samples in North America.
- Published in:
- Viruses (1999-4915), 2021, v. 13, n. 5, p. 810, doi. 10.3390/v13050810
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- Publication type:
- Article
Elucidation of Early Evolution of HIV-1 Group M in the Congo Basin Using Computational Methods.
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- Genes, 2021, v. 12, n. 4, p. 517, doi. 10.3390/genes12040517
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- Article
How virulent are emerging maize-infecting mastreviruses?
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- Archives of Virology, 2021, v. 166, n. 3, p. 955, doi. 10.1007/s00705-020-04906-x
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- Publication type:
- Article
RDP5: a computer program for analyzing recombination in, and removing signals of recombination from, nucleotide sequence datasets.
- Published in:
- Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veaa087
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- Publication type:
- Article
Transmission dynamics of SARS-CoV-2 within-host diversity in two major hospital outbreaks in South Africa.
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- Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab041
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- Publication type:
- Article
Diverse genomoviruses representing twenty-nine species identified associated with plants.
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- Archives of Virology, 2020, v. 165, n. 12, p. 2891, doi. 10.1007/s00705-020-04801-5
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- Article
Sorghum mastrevirus-associated alphasatellites: new geminialphasatellites associated with an African streak mastrevirus infecting wild Poaceae plants on Reunion Island.
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- Archives of Virology, 2020, v. 165, n. 8, p. 1925, doi. 10.1007/s00705-020-04685-5
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- Publication type:
- Article
Heterogeneity of the rice microbial community of the Chinese centuries‐old Honghe Hani rice terraces system.
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- Environmental Microbiology, 2020, v. 22, n. 8, p. 3429, doi. 10.1111/1462-2920.15114
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- Publication type:
- Article
Large-scale survey reveals pervasiveness and potential function of endogenous geminiviral sequences in plants.
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- Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa071
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- Article
Emergence of Southern Rice Black-Streaked Dwarf Virus in the Centuries-Old Chinese Yuanyang Agrosystem of Rice Landraces.
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- Viruses (1999-4915), 2019, v. 11, n. 11, p. 985, doi. 10.3390/v11110985
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- Publication type:
- Article
Evolutionary dynamics of ten novel Gamma-PVs: insights from phylogenetic incongruence, recombination and phylodynamic analyses.
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- BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-5735-9
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- Publication type:
- Article
Novel circular DNA viruses associated with Apiaceae and Poaceae from South Africa and New Zealand.
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- Archives of Virology, 2019, v. 164, n. 1, p. 237, doi. 10.1007/s00705-018-4031-3
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- Publication type:
- Article
Nanopore-based detection and characterization of yam viruses.
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- Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-36042-7
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- Publication type:
- Article
Alphasatellitidae: a new family with two subfamilies for the classification of geminivirus- and nanovirus-associated alphasatellites.
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- Archives of Virology, 2018, v. 163, n. 9, p. 2587, doi. 10.1007/s00705-018-3854-2
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- Publication type:
- Article
Passion Fruit Chlorotic Mottle Virus: Molecular Characterization of a New Divergent Geminivirus in Brazil.
- Published in:
- Viruses (1999-4915), 2018, v. 10, n. 4, p. 169, doi. 10.3390/v10040169
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- Publication type:
- Article
Molecular characterization of faba bean necrotic yellows viruses in Tunisia.
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- Archives of Virology, 2018, v. 163, n. 3, p. 687, doi. 10.1007/s00705-017-3651-3
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- Publication type:
- Article
Nanovirus-alphasatellite complex identified in <italic>Vicia cracca</italic> in the Rhône delta region of France.
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- Archives of Virology, 2018, v. 163, n. 3, p. 695, doi. 10.1007/s00705-017-3634-4
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- Article
Recombinant Goose Circoviruses Circulating in Domesticated and Wild Geese in Poland.
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- Viruses (1999-4915), 2018, v. 10, n. 3, p. 107, doi. 10.3390/v10030107
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- Article
Tomato leaf curl New Delhi virus: a widespread bipartite begomovirus in the territory of monopartite begomoviruses.
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- Molecular Plant Pathology, 2017, v. 18, n. 7, p. 901, doi. 10.1111/mpp.12481
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- Article
Occurrence of a novel mastrevirus in sugarcane germplasm collections in Florida, Guadeloupe and Réunion.
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- Virology Journal, 2017, v. 14, p. 1, doi. 10.1186/s12985-017-0810-9
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- Article
The Influence of HIV on the Evolution of Mycobacterium tuberculosis.
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- Molecular Biology & Evolution, 2017, v. 34, n. 7, p. 1654, doi. 10.1093/molbev/msx107
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- Article
African Horse Sickness Caused by Genome Reassortment and Reversion to Virulence of Live, Attenuated Vaccine Viruses, South Africa, 2004-2014.
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- 2016
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- Publication type:
- journal article
Metagenomic-Based Screening and Molecular Characterization of Cowpea-Infecting Viruses in Burkina Faso.
- Published in:
- PLoS ONE, 2016, v. 11, n. 10, p. 1, doi. 10.1371/journal.pone.0165188
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- Publication type:
- Article
Divergent evolutionary and epidemiological dynamics of cassava mosaic geminiviruses in Madagascar.
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- BMC Evolutionary Biology, 2016, v. 16, p. 1, doi. 10.1186/s12862-016-0749-2
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- Article
Potent Sensitisation of Cancer Cells to Anticancer Drugs by a Quadruple Mutant of the Human Deoxycytidine Kinase.
- Published in:
- PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0140741
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- Publication type:
- Article
Gene-Wide Identification of Episodic Selection.
- Published in:
- Molecular Biology & Evolution, 2015, v. 32, n. 5, p. 1365, doi. 10.1093/molbev/msv035
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- Article
Identification of an Australian-like dicot-infecting mastrevirus in Pakistan.
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- Archives of Virology, 2015, v. 160, n. 3, p. 825, doi. 10.1007/s00705-014-2299-5
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- Publication type:
- Article
Inducible Resistance to Maize Streak Virus.
- Published in:
- PLoS ONE, 2014, v. 9, n. 8, p. 1, doi. 10.1371/journal.pone.0105932
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- Article
Appearances Can Be Deceptive: Revealing a Hidden Viral Infection with Deep Sequencing in a Plant Quarantine Context.
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- PLoS ONE, 2014, v. 9, n. 7, p. 1, doi. 10.1371/journal.pone.0102945
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- Article
The influence of secondary structure, selection and recombination on rubella virus nucleotide substitution rate estimates.
- Published in:
- Virology Journal, 2014, v. 11, n. 1, p. 166, doi. 10.1186/1743-422X-11-166
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- Publication type:
- Article
Patterns of Recombination in HIV-1M Are Influenced by Selection Disfavouring the Survival of Recombinants with Disrupted Genomic RNA and Protein Structures.
- Published in:
- PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0100400
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- Publication type:
- Article
Within-Host Dynamics of the Emergence of Tomato Yellow Leaf Curl Virus Recombinants.
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- PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0058375
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- Publication type:
- Article
Characterization of HIV-1 gag and nef in Cameroon: further evidence of extreme diversity at the origin of the HIV-1 group M epidemic.
- Published in:
- Virology Journal, 2013, v. 10, n. 1, p. 1, doi. 10.1186/1743-422X-10-29
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- Publication type:
- Article
Genetic Variability among Complete Human Respiratory Syncytial Virus Subgroup A Genomes: Bridging Molecular Evolutionary Dynamics and Epidemiology.
- Published in:
- PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0051439
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- Publication type:
- Article
Comparative Genomic and Phylogenetic Approaches to Characterize the Role of Genetic Recombination in Mycobacterial Evolution.
- Published in:
- PLoS ONE, 2012, v. 7, n. 11, p. 1, doi. 10.1371/journal.pone.0050070
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- Publication type:
- Article
The Enzymatic and Metabolic Capabilities of Early Life.
- Published in:
- PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0039912
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- Publication type:
- Article
East African cassava mosaic-like viruses from Africa to Indian ocean islands: molecular diversity, evolutionary history and geographical dissemination of a bipartite begomovirus.
- Published in:
- BMC Evolutionary Biology, 2012, v. 12, n. 1, p. 228, doi. 10.1186/1471-2148-12-228
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- Publication type:
- Article
Adaptive evolution by recombination is not associated with increased mutation rates in Maize streak virus.
- Published in:
- BMC Evolutionary Biology, 2012, v. 12, n. 1, p. 252, doi. 10.1186/1471-2148-12-252
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- Publication type:
- Article
Differences in Genotype and Virulence among Four Multidrug-Resistant Streptococcus pneumoniae Isolates Belonging to the PMEN1 Clone.
- Published in:
- PLoS ONE, 2011, v. 6, n. 12, p. 1, doi. 10.1371/journal.pone.0028850
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- Publication type:
- Article