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Sequence Analysis and Characterization of Active Human Alu Subfamilies Based on the 1000 Genomes Pilot Project.
- Published in:
- Genome Biology & Evolution, 2015, v. 7, n. 9, p. 2608, doi. 10.1093/gbe/evv167
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- Article
Population Genomic Inferences from Sparse High-Throughput Sequencing of Two Populations of Drosophila melanogaster.
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- Genome Biology & Evolution, 2009, v. 1, p. 439, doi. 10.1093/gbe/evp048
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- Publication type:
- Article
Tangram: a comprehensive toolbox for mobile element insertion detection.
- Published in:
- BMC Genomics, 2014, v. 15, n. 1, p. 795, doi. 10.1186/1471-2164-15-795
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- Publication type:
- Article
Whole genome profiling of spontaneous and chemically induced mutations in Toxoplasma gondii.
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- BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-354
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- Publication type:
- Article
Variant discovery in targeted resequencing using whole genome amplified DNA.
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- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-468
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- Publication type:
- Article
Genetic basis for phenotypic differences between different Toxoplasma gondii type I strains.
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- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-467
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- Publication type:
- Article
The Allele Frequency Spectrum in Genome-Wide Human Variation Data Reveals Signals of Differential Demographic History in Three Large World Populations.
- Published in:
- Genetics, 2004, v. 166, n. 1, p. 351, doi. 10.1534/genetics.166.1.351
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- Article
Rapid clinical diagnostic variant investigation of genomic patient sequencing data with iobio web tools.
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- Journal of Clinical & Translational Science, 2017, v. 1, n. 6, p. 381, doi. 10.1017/cts.2017.311
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- Article
Extending reference assembly models.
- Published in:
- Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0587-3
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- Publication type:
- Article
SubcloneSeeker: a computational framework for reconstructing tumor clone structure for cancer variant interpretation and prioritization.
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- Genome Biology, 2014, v. 15, n. 8, p. 1, doi. 10.1186/s13059-014-0443-x
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- Publication type:
- Article
quickBAM: a parallelized BAM file access API for high-throughput sequence analysis informatics.
- Published in:
- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad463
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- Publication type:
- Article
Targeted proteomic dissection of Toxoplasma cytoskeleton sub-compartments using MORN1.
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- Cytoskeleton, 2012, v. 69, n. 12, p. 1069, doi. 10.1002/cm.21077
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- Publication type:
- Article
Scotty: a web tool for designing RNA-Seq experiments to measure differential gene expression.
- Published in:
- Bioinformatics, 2013, v. 29, n. 5, p. 656, doi. 10.1093/bioinformatics/btt015
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- Publication type:
- Article
ART: a next-generation sequencing read simulator.
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- Bioinformatics, 2012, v. 28, n. 4, p. 593, doi. 10.1093/bioinformatics/btr708
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- Publication type:
- Article
The variant call format and VCFtools.
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- Bioinformatics, 2011, v. 27, n. 15, p. 2156
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- Publication type:
- Article
BamTools: a C++ API and toolkit for analyzing and managing BAM files.
- Published in:
- Bioinformatics, 2011, v. 27, n. 12, p. 1691, doi. 10.1093/bioinformatics/btr174
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- Publication type:
- Article
The functional spectrum of low-frequency coding variation.
- Published in:
- Genome Biology, 2011, v. 12, n. 9, p. 1, doi. 10.1186/gb-2011-12-9-r84
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- Publication type:
- Article
The stochastic nature of errors in next-generation sequencing of circulating cell-free DNA.
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- PLoS ONE, 2020, v. 15, n. 2, p. 1, doi. 10.1371/journal.pone.0229063
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- Publication type:
- Article
Copy Number Variation detection from 1000 Genomes project exon capture sequencing data.
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- BMC Bioinformatics, 2012, v. 13, n. 1, p. 1, doi. 10.1186/1471-2105-13-305
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- Publication type:
- Article
Analysis of concordance of different haplotype block partitioning algorithms.
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- BMC Bioinformatics, 2005, v. 6, p. 303, doi. 10.1186/1471-2105-6-303
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- Publication type:
- Article
Novel temporal and spatial patterns of metastatic colonization from breast cancer rapid-autopsy tumor biopsies.
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- Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00989-6
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- Publication type:
- Article
OncoGEMINI: software for investigating tumor variants from multiple biopsies with integrated cancer annotations.
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- Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00854-6
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- Publication type:
- Article
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping.
- Published in:
- PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0090581
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- Publication type:
- Article
SSW Library: An SIMD Smith-Waterman C/C++ Library for Use in Genomic Applications.
- Published in:
- PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0082138
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- Publication type:
- Article
A general approach to single-nucleotide polymorphism discovery.
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- Nature Genetics, 1999, v. 23, n. 4, p. 452, doi. 10.1038/70570
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- Article
SpeedSeq: ultra-fast personal genome analysis and interpretation.
- Published in:
- Nature Methods, 2015, v. 12, n. 10, p. 966, doi. 10.1038/nmeth.3505
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- Publication type:
- Article
bam.iobio: a web-based, real-time, sequence alignment file inspector.
- Published in:
- Nature Methods, 2014, v. 11, n. 12, p. 1189, doi. 10.1038/nmeth.3174
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- Publication type:
- Article
Pyrobayes: an improved base caller for SNP discovery in pyrosequences.
- Published in:
- Nature Methods, 2008, v. 5, n. 2, p. 179, doi. 10.1038/nmeth.1172
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- Publication type:
- Article
Whole-genome sequencing and variant discovery in C. elegans.
- Published in:
- Nature Methods, 2008, v. 5, n. 2, p. 183, doi. 10.1038/nmeth.1179
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- Article
Primer-site SNPs mask mutations.
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- 2007
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- Publication type:
- Letter
A Comprehensive Map of Mobile Element Insertion Polymorphisms in Humans.
- Published in:
- PLoS Genetics, 2011, v. 7, n. 8, p. 1, doi. 10.1371/journal.pgen.1002236
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- Publication type:
- Article
Whole-genome analysis for effective clinical diagnosis and gene discovery in early infantile epileptic encephalopathy.
- Published in:
- NPJ Genomic Medicine, 2018, v. 3, n. 1, p. N.PAG, doi. 10.1038/s41525-018-0061-8
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- Publication type:
- Article
Automated size selection for short cell-free DNA fragments enriches for circulating tumor DNA and improves error correction during next generation sequencing.
- Published in:
- PLoS ONE, 2018, v. 13, n. 7, p. 1, doi. 10.1371/journal.pone.0197333
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- Publication type:
- Article