Works by Marrink, Siewert-Jan

Results: 12

Role of Charge and Hydrophobicity in Liprotide Formation: A Molecular Dynamics Study with Experimental Constraints.

Published in:

ChemBioChem, 2018, v. 19, n. 3, p. 263, doi. 10.1002/cbic.201700496

By:

Nedergaard Pedersen, Jannik;
Frederix, Pim Wilhelmus Johannes Maria;
Skov Pedersen, Jan;
Marrink, Siewert Jan;
Otzen, Daniel E.

Publication type:

Article

A tool for the morphological analysis of mixtures of lipids and water in computer simulations.

Published in:

Journal of Molecular Modeling, 2011, v. 17, n. 7, p. 1755, doi. 10.1007/s00894-010-0858-6

By:

Fuhrmans, Marc;
Marrink, Siewert-Jan

Publication type:

Article

Adaption to glucose limitation is modulated by the pleotropic regulator CcpA, independent of selection pressure strength.

Published in:

BMC Evolutionary Biology, 2019, v. 19, n. 1, p. N.PAG, doi. 10.1186/s12862-018-1331-x

By:

Price, Claire E.;
Branco dos Santos, Filipe;
Hesseling, Anne;
Uusitalo, Jaakko J.;
Bachmann, Herwig;
Benavente, Vera;
Goel, Anisha;
Berkhout, Jan;
Bruggeman, Frank J.;
Marrink, Siewert-Jan;
Montalban-Lopez, Manolo;
de Jong, Anne;
Kok, Jan;
Molenaar, Douwe;
Poolman, Bert;
Teusink, Bas;
Kuipers, Oscar P.

Publication type:

Article

Martini 3 Coarse-Grained Model for the Cofactors Involved in Photosynthesis.

Published in:

International Journal of Molecular Sciences, 2024, v. 25, n. 14, p. 7947, doi. 10.3390/ijms25147947

By:

Chiariello, Maria Gabriella;
Zarmiento-Garcia, Rubi;
Marrink, Siewert-Jan

Publication type:

Article

Role of Lipids in Spheroidal High Density Lipoproteins.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 10, p. 1, doi. 10.1371/journal.pcbi.1000964

By:

Vuorela, Timo;
Catte, Andrea;
Niemela¨, Perttu S.;
Hall, Anette;
Hyvo¨ nen, Marja T.;
Marrink, Siewert-Jan;
Karttunen, Mikko;
Vattulainen, Iipo

Publication type:

Article

The structural basis for peptide selection by the transport receptor OppA.

Published in:

EMBO Journal, 2009, v. 28, n. 9, p. 1332, doi. 10.1038/emboj.2009.65

By:

Berntsson, Ronnie P.-A.;
Doeven, Mark K.;
Fusetti, Fabrizia;
Duurkens, Ria H.;
Sengupta, Durba;
Marrink, Siewert-Jan;
Thunnissen, Andy-Mark W. H.;
Poolman, Bert;
Slotboom, Dirk-Jan

Publication type:

Article

Dual Action of BPC194: A Membrane Active Peptide Killing Bacterial Cells.

Published in:

PLoS ONE, 2013, v. 8, n. 4, p. 1, doi. 10.1371/journal.pone.0061541

By:

Moiset, Gemma;
Cirac, Anna D.;
Stuart, Marc C. A.;
Marrink, Siewert-Jan;
Sengupta, Durba;
Poolman, Bert

Publication type:

Article

Line-Tension Controlled Mechanism for Influenza Fusion.

Published in:

PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0038302

By:

Risselada, Herre Jelger;
Marelli, Giovanni;
Fuhrmans, Marc;
Smirnova, Yuliya G.;
Grubmüller, Helmut;
Marrink, Siewert Jan;
Müller, Marcus

Publication type:

Article

Thermostable D-amino acid decarboxylases derived from Thermotoga maritima diaminopimelate decarboxylase.

Published in:

PEDS: Protein Engineering, Design & Selection, 2021, v. 34, p. 1, doi. 10.1093/protein/gzab016

By:

Marjanovic, Antonija;
Ramírez-Palacios, Carlos J;
Masman, Marcelo F;
Drenth, Jeroen;
Otzen, Marleen;
Marrink, Siewert-Jan;
Janssen, Dick B

Publication type:

Article

Semiconducting Single-Walled Carbon Nanotubes on Demand by Polymer Wrapping.

Published in:

Advanced Materials, 2013, v. 25, n. 21, p. 2948, doi. 10.1002/adma.201300267

By:

Gomulya, Widianta;
Costanzo, Guadalupe Diaz;
de Carvalho, Elton J. Figueiredo;
Bisri, Satria Zulkarnaen;
Derenskyi, Vladimir;
Fritsch, Martin;
Fröhlich, Nils;
Allard, Sybille;
Gordiichuk, Pavlo;
Herrmann, Andreas;
Marrink, Siewert Jan;
dos Santos, Maria Cristina;
Scherf, Ulrich;
Loi, Maria Antonietta

Publication type:

Article

Effects of bundling on the properties of the SPC water model.

Published in:

Theoretical Chemistry Accounts: Theory, Computation, & Modeling, 2010, v. 125, n. 3-6, p. 335, doi. 10.1007/s00214-009-0590-4

By:

Fuhrmans, Marc;
Sanders, Barbara P.;
Marrink, Siewert-Jan;
de Vries, Alex H.

Publication type:

Article

Altered secondary structure of Dynorphin A associates with loss of opioid signalling and NMDA-mediated excitotoxicity in SCA23.

Published in:

Human Molecular Genetics, 2016, v. 25, n. 13, p. 2728, doi. 10.1093/hmg/ddw130

By:

Smeets, Cleo J. L. M.;
Zmorzyńska, Justyna;
Melo, Manuel N.;
Stargardt, Anita;
Dooley, Colette;
Bakalkin, Georgy;
McLaughlin, Jay;
Sinke, Richard J.;
Marrink, Siewert-Jan;
Reits, Eric;
Verbeek, Dineke S.

Publication type:

Article