Works by Marr, Carsten

Results: 36

Social Transfer of Pathogenic Fungus Promotes Active Immunisation in Ant Colonies.

Published in:

PLoS Biology, 2012, v. 10, n. 4, p. 1, doi. 10.1371/journal.pbio.1001300

By:

Konrad, Matthias;
Vyleta, Meghan L.;
Theis, Fabian J.;
Stock, Miriam;
Tragust, Simon;
Klatt, Martina;
Drescher, Verena;
Marr, Carsten;
Ugelvig, Line V.;
Cremer, Sylvia

Publication type:

Article

Cellular connectomes as arbiters of local circuit models in the cerebral cortex.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22856-z

By:

Klinger, Emmanuel;
Motta, Alessandro;
Marr, Carsten;
Theis, Fabian J.;
Helmstaedter, Moritz

Publication type:

Article

Expert-level detection of M-proteins in serum protein electrophoresis using machine learning.

Published in:

Clinical Chemistry & Laboratory Medicine, 2024, v. 62, n. 12, p. 2498, doi. 10.1515/cclm-2024-0222

By:

Elfert, Eike;
Kaminski, Wolfgang E.;
Matek, Christian;
Hoermann, Gregor;
Axelsen, Eyvind W.;
Marr, Carsten;
Piehler, Armin P.

Publication type:

Article

Multi-scale modeling of GMP differentiation based on single-cell genealogies.

Published in:

FEBS Journal, 2012, v. 279, n. 18, p. 3488, doi. 10.1111/j.1742-4658.2012.08664.x

By:

Marr, Carsten;
Strasser, Michael;
Schwarzfischer, Michael;
Schroeder, Timm;
Theis, Fabian J.

Publication type:

Article

A geometric analysis of fast-slow models for stochastic gene expression.

Published in:

Journal of Mathematical Biology, 2016, v. 72, n. 1/2, p. 87, doi. 10.1007/s00285-015-0876-1

By:

Popović, Nikola;
Marr, Carsten;
Swain, Peter

Publication type:

Article

Altered expression response upon repeated gene repression in single yeast cells.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 10, p. 1, doi. 10.1371/journal.pcbi.1010640

By:

Schuh, Lea;
Kukhtevich, Igor;
Bheda, Poonam;
Schulz, Melanie;
Bordukova, Maria;
Schneider, Robert;
Marr, Carsten

Publication type:

Article

Explainable AI identifies diagnostic cells of genetic AML subtypes.

Published in:

PLoS Digital Health, 2023, v. 1, n. 3, p. 1, doi. 10.1371/journal.pdig.0000187

By:

Hehr, Matthias;
Sadafi, Ario;
Matek, Christian;
Lienemann, Peter;
Pohlkamp, Christian;
Haferlach, Torsten;
Spiekermann, Karsten;
Marr, Carsten

Publication type:

Article

Wound infiltrating adipocytes are not myofibroblasts.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38591-6

By:

Kalgudde Gopal, Shruthi;
Dai, Ruoxuan;
Stefanska, Ania Maria;
Ansari, Meshal;
Zhao, Jiakuan;
Ramesh, Pushkar;
Bagnoli, Johannes W.;
Correa-Gallegos, Donovan;
Lin, Yue;
Christ, Simon;
Angelidis, Ilias;
Lupperger, Valerio;
Marr, Carsten;
Davies, Lindsay C.;
Enard, Wolfgang;
Machens, Hans-Günther;
Schiller, Herbert B.;
Jiang, Dongsheng;
Rinkevich, Yuval

Publication type:

Article

Explainable machine learning for profiling the immunological synapse and functional characterization of therapeutic antibodies.

Published in:

Nature Communications, 2023, p. 1, doi. 10.1038/s41467-023-43429-2

By:

Shetab Boushehri, Sayedali;
Essig, Katharina;
Chlis, Nikolaos-Kosmas;
Herter, Sylvia;
Bacac, Marina;
Theis, Fabian J.;
Glasmacher, Elke;
Marr, Carsten;
Schmich, Fabian

Publication type:

Article

Image analysis of neural stem cell division patterns in the zebrafish brain.

Published in:

Cytometry. Part A, 2018, v. 93, n. 3, p. 314, doi. 10.1002/cyto.a.23260

By:

Lupperger, Valerio;
Buggenthin, Felix;
Chapouton, Prisca;
Marr, Carsten

Publication type:

Article

Metabolic regulation of pluripotency and germ cell fate through α‐ketoglutarate.

Published in:

EMBO Journal, 2019, v. 38, n. 1, p. N.PAG, doi. 10.15252/embj.201899518

By:

Tischler, Julia;
Gruhn, Wolfram H;
Reid, John;
Allgeyer, Edward;
Buettner, Florian;
Marr, Carsten;
Theis, Fabian;
Simons, Ben D;
Wernisch, Lorenz;
Surani, M Azim

Publication type:

Article

Automatic identification of relevant genes from low-dimensional embeddings of single-cell RNA-seq data.

Published in:

Bioinformatics, 2020, v. 36, n. 15, p. 4291, doi. 10.1093/bioinformatics/btaa198

By:

Angerer, Philipp;
Fischer, David S;
Theis, Fabian J;
Scialdone, Antonio;
Marr, Carsten

Publication type:

Article

fastER: a user-friendly tool for ultrafast and robust cell segmentation in large-scale microscopy.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 2020, doi. 10.1093/bioinformatics/btx107

By:

Hilsenbeck, Oliver;
Schwarzfischer, Michael;
Loeffler, Dirk;
Dimopoulos, Sotiris;
Hastreiter, Simon;
Marr, Carsten;
Theis, Fabian J.;
Schroeder, Timm

Publication type:

Article

destiny: diffusion maps for large-scale single-cell data in R.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1241, doi. 10.1093/bioinformatics/btv715

By:

Angerer, Philipp;
Haghverdi, Laleh;
Büttner, Maren;
Theis, Fabian J.;
Marr, Carsten;
Buettner, Florian

Publication type:

Article

Cytosolic S100A8/A9 promotes Ca<sup>2+</sup> supply at LFA-1 adhesion clusters during neutrophil recruitment.

Published in:

eLife, 2024, p. 1, doi. 10.7554/eLife.96810

By:

Napoli, Matteo;
Immler, Roland;
Rohwedder, Ina;
Lupperger, Valerio;
Pfabe, Johannes;
Pisfil, Mariano Gonzalez;
Yevtushenko, Anna;
Vogl, Thomas;
Roth, Johannes;
Salvermoser, Melanie;
Dietzel, Steffen;
Rupnik, Marjan Slak;
Marr, Carsten;
Walzog, Barbara;
Sperandio, Markus;
Pruenster, Monika

Publication type:

Article

Inference of spatiotemporal effects on cellular state transitions from time-lapse microscopy.

Published in:

BMC Systems Biology, 2015, v. 9, n. 1, p. 1, doi. 10.1186/s12918-015-0208-5

By:

Strasser, Michael K.;
Feigelman, Justin;
Theis, Fabian J.;
Marr, Carsten

Publication type:

Article

Dissecting the logical types of network control in gene expression profiles.

Published in:

BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-18

By:

Marr, Carsten;
Geertz, Marcel;
Hütt, Marc-Thorsten;
Muskhelishvili, Georgi

Publication type:

Article

Correction: Reoccuring neural stem cell divisions in the adult zebrafish telencephalon are sufficient for the emergence of aggregated spatio-temporal patterns.

Published in:

2021

By:

Lupperger, Valerio;
Marr, Carsten;
Chapouton, Prisca

Publication type:

Correction Notice

Reoccurring neural stem cell divisions in the adult zebrafish telencephalon are sufficient for the emergence of aggregated spatiotemporal patterns.

Published in:

PLoS Biology, 2020, v. 18, n. 12, p. 1, doi. 10.1371/journal.pbio.3000708

By:

Lupperger, Valerio;
Marr, Carsten;
Chapouton, Prisca

Publication type:

Article

Time-dependent propagators for stochastic models of gene expression: an analytical method.

Published in:

Journal of Mathematical Biology, 2018, v. 77, n. 2, p. 261, doi. 10.1007/s00285-017-1196-4

By:

Veerman, Frits;
Marr, Carsten;
Popović, Nikola

Publication type:

Article

MCA: Multiresolution Correlation Analysis, a graphical tool for subpopulation identification in single-cell gene expression data.

Published in:

BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-240

By:

Feigelman, Justin;
Theis, Fabian J.;
Marr, Carsten

Publication type:

Article

An automatic method for robust and fast cell detection in bright field images from high-throughput microscopy.

Published in:

BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-297

By:

Buggenthin, Felix;
Marr, Carsten;
Schwarzfischer, Michael;
Hoppe, Philipp S.;
Hilsenbeck, Oliver;
Schroeder, Timm;
Theis, Fabian J.

Publication type:

Article

Patterns of Subnet Usage Reveal Distinct Scales of Regulation in the Transcriptional Regulatory Network of Escherichia coli.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000836

By:

Marr, Carsten;
Theis, Fabian J.;
Liebovitch, Larry S.;
Hütt, Marc-Thorsten

Publication type:

Article

Parameter inference with analytical propagators for stochastic models of autoregulated gene expression.

Published in:

International Journal of Nonlinear Sciences & Numerical Simulation, 2022, v. 23, n. 3/4, p. 565, doi. 10.1515/ijnsns-2019-0258

By:

Veerman, Frits;
Popović, Nikola;
Marr, Carsten

Publication type:

Article

Lineage marker synchrony in hematopoietic genealogies refutes the PU.1/GATA1 toggle switch paradigm.

Published in:

Nature Communications, 2018, v. 9, p. 1, doi. 10.1038/s41467-018-05037-3

By:

Strasser, Michael K.;
Hoppe, Philipp S.;
Loeffler, Dirk;
Kokkaliaris, Konstantinos D.;
Schroeder, Timm;
Theis, Fabian J.;
Marr, Carsten

Publication type:

Article

A generalizable brain extraction net (BEN) for multimodal MRI data from rodents, nonhuman primates, and humans.

Published in:

eLife, 2023, p. 1, doi. 10.7554/eLife.81217

By:

Ziqi Yu;
Xiaoyang Han;
Wenjing Xu;
Jie Zhang;
Marr, Carsten;
Dinggang Shen;
Tingying Peng;
Xiao-Yong Zhang;
Jianfeng Feng

Publication type:

Article

Tens of images can suffice to train neural networks for malignant leukocyte detection.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-86995-5

By:

Schouten, Jens P. E.;
Matek, Christian;
Jacobs, Luuk F. P.;
Buck, Michèle C.;
Bošnački, Dragan;
Marr, Carsten

Publication type:

Article

Network plasticity of pluripotency transcription factors in embryonic stem cells.

Published in:

Nature Cell Biology, 2015, v. 17, n. 10, p. 1235, doi. 10.1038/ncb3237

By:

Hastreiter, Simon;
Hoppe, Philipp S.;
Loeffler, Dirk;
Kokkaliaris, Konstantinos D.;
Endele, Max;
Schauberger, Bernhard;
Hilsenbeck, Oliver;
Skylaki, Stavroula;
Hasenauer, Jan;
Theis, Fabian J.;
Schroeder, Timm;
Filipczyk, Adam;
Marr, Carsten;
Feigelman, Justin;
Schwarzfischer, Michael;
Anastassiadis, Konstantinos

Publication type:

Article

Injury triggers fascia fibroblast collective cell migration to drive scar formation through N-cadherin.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-19425-1

By:

Jiang, Dongsheng;
Christ, Simon;
Correa-Gallegos, Donovan;
Ramesh, Pushkar;
Kalgudde Gopal, Shruthi;
Wannemacher, Juliane;
Mayr, Christoph H.;
Lupperger, Valerio;
Yu, Qing;
Ye, Haifeng;
Mück-Häusl, Martin;
Rajendran, Vijayanand;
Wan, Li;
Liu, Juan;
Mirastschijski, Ursula;
Volz, Thomas;
Marr, Carsten;
Schiller, Herbert B.;
Rinkevich, Yuval

Publication type:

Article

RedTell: an AI tool for interpretable analysis of red blood cell morphology.

Published in:

Frontiers in Physiology, 2023, p. 1, doi. 10.3389/fphys.2023.1058720

By:

Sadafi, Ario;
Bordukova, Maria;
Makhro, Asya;
Navab, Nassir;
Bogdanova, Anna;
Marr, Carsten

Publication type:

Article

Hierarchical Differentiation of Myeloid Progenitors Is Encoded in the Transcription Factor Network.

Published in:

PLoS ONE, 2011, v. 6, n. 8, p. 1, doi. 10.1371/journal.pone.0022649

By:

Krumsiek, Jan;
Marr, Carsten;
Schroeder, Timm;
Theis, Fabian J.

Publication type:

Article

Tissue-Specific Target Analysis of Disease-Associated MicroRNAs in Human Signaling Pathways.

Published in:

PLoS ONE, 2010, v. 5, n. 6, p. 1, doi. 10.1371/journal.pone.0011154

By:

Kowarsch, Andreas;
Marr, Carsten;
Schmidl, Daniel;
Ruepp, Andreas;
Theis, Fabian J.

Publication type:

Article

SimiRa: A tool to identify coregulation between microRNAs and RNA-binding proteins.

Published in:

RNA Biology, 2015, v. 12, n. 9, p. 998, doi. 10.1080/15476286.2015.1068496

By:

Preusse, Martin;
Marr, Carsten;
Saunders, Sita;
Maticzka, Daniel;
Lickert, Heiko;
Backofen, Rolf;
Theis, Fabian

Publication type:

Article

Software tools for single-cell tracking and quantification of cellular and molecular properties.

Published in:

Nature Biotechnology, 2016, v. 34, n. 7, p. 703, doi. 10.1038/nbt.3626

By:

Hilsenbeck, Oliver;
Schwarzfischer, Michael;
Skylaki, Stavroula;
Schauberger, Bernhard;
Hoppe, Philipp S;
Loeffler, Dirk;
Kokkaliaris, Konstantinos D;
Hastreiter, Simon;
Skylaki, Eleni;
Filipczyk, Adam;
Strasser, Michael;
Buggenthin, Felix;
Feigelman, Justin S;
Krumsiek, Jan;
van den Berg, Adrianus J J;
Endele, Max;
Etzrodt, Martin;
Marr, Carsten;
Theis, Fabian J;
Schroeder, Timm

Publication type:

Article

InstantDL: an easy-to-use deep learning pipeline for image segmentation and classification.

Published in:

BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04037-3

By:

Waibel, Dominik Jens Elias;
Shetab Boushehri, Sayedali;
Marr, Carsten

Publication type:

Article

Intronic microRNAs support their host genes by mediating synergistic and antagonistic regulatory effects.

Published in:

BMC Genomics, 2010, v. 11, p. 224, doi. 10.1186/1471-2164-11-224

By:

Lutter, Dominik;
Marr, Carsten;
Krumsiek, Jan;
Lang, Elmar W.;
Theis, Fabian J.

Publication type:

Article