Works by Marr, Carsten

Results: 36

Inference of spatiotemporal effects on cellular state transitions from time-lapse microscopy.
Published in:
BMC Systems Biology, 2015, v. 9, n. 1, p. 1, doi. 10.1186/s12918-015-0208-5
By:
- Strasser, Michael K.;
- Feigelman, Justin;
- Theis, Fabian J.;
- Marr, Carsten
Publication type:
Article
Dissecting the logical types of network control in gene expression profiles.
Published in:
BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-18
By:
- Marr, Carsten;
- Geertz, Marcel;
- Hütt, Marc-Thorsten;
- Muskhelishvili, Georgi
Publication type:
Article
MCA: Multiresolution Correlation Analysis, a graphical tool for subpopulation identification in single-cell gene expression data.
Published in:
BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-240
By:
- Feigelman, Justin;
- Theis, Fabian J.;
- Marr, Carsten
Publication type:
Article
An automatic method for robust and fast cell detection in bright field images from high-throughput microscopy.
Published in:
BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-297
By:
- Buggenthin, Felix;
- Marr, Carsten;
- Schwarzfischer, Michael;
- Hoppe, Philipp S.;
- Hilsenbeck, Oliver;
- Schroeder, Timm;
- Theis, Fabian J.
Publication type:
Article
Automatic identification of relevant genes from low-dimensional embeddings of single-cell RNA-seq data.
Published in:
Bioinformatics, 2020, v. 36, n. 15, p. 4291, doi. 10.1093/bioinformatics/btaa198
By:
- Angerer, Philipp;
- Fischer, David S;
- Theis, Fabian J;
- Scialdone, Antonio;
- Marr, Carsten
Publication type:
Article
fastER: a user-friendly tool for ultrafast and robust cell segmentation in large-scale microscopy.
Published in:
Bioinformatics, 2017, v. 33, n. 13, p. 2020, doi. 10.1093/bioinformatics/btx107
By:
- Hilsenbeck, Oliver;
- Schwarzfischer, Michael;
- Loeffler, Dirk;
- Dimopoulos, Sotiris;
- Hastreiter, Simon;
- Marr, Carsten;
- Theis, Fabian J.;
- Schroeder, Timm
Publication type:
Article
destiny: diffusion maps for large-scale single-cell data in R.
Published in:
Bioinformatics, 2016, v. 32, n. 8, p. 1241, doi. 10.1093/bioinformatics/btv715
By:
- Angerer, Philipp;
- Haghverdi, Laleh;
- Büttner, Maren;
- Theis, Fabian J.;
- Marr, Carsten;
- Buettner, Florian
Publication type:
Article
A generalizable brain extraction net (BEN) for multimodal MRI data from rodents, nonhuman primates, and humans.
Published in:
eLife, 2023, p. 1, doi. 10.7554/eLife.81217
By:
- Ziqi Yu;
- Xiaoyang Han;
- Wenjing Xu;
- Jie Zhang;
- Marr, Carsten;
- Dinggang Shen;
- Tingying Peng;
- Xiao-Yong Zhang;
- Jianfeng Feng
Publication type:
Article
Parameter inference with analytical propagators for stochastic models of autoregulated gene expression.
Published in:
International Journal of Nonlinear Sciences & Numerical Simulation, 2022, v. 23, n. 3/4, p. 565, doi. 10.1515/ijnsns-2019-0258
By:
- Veerman, Frits;
- Popović, Nikola;
- Marr, Carsten
Publication type:
Article
Social Transfer of Pathogenic Fungus Promotes Active Immunisation in Ant Colonies.
Published in:
PLoS Biology, 2012, v. 10, n. 4, p. 1, doi. 10.1371/journal.pbio.1001300
By:
- Konrad, Matthias;
- Vyleta, Meghan L.;
- Theis, Fabian J.;
- Stock, Miriam;
- Tragust, Simon;
- Klatt, Martina;
- Drescher, Verena;
- Marr, Carsten;
- Ugelvig, Line V.;
- Cremer, Sylvia
Publication type:
Article
Expert-level detection of M-proteins in serum protein electrophoresis using machine learning.
Published in:
Clinical Chemistry & Laboratory Medicine, 2024, v. 62, n. 12, p. 2498, doi. 10.1515/cclm-2024-0222
By:
- Elfert, Eike;
- Kaminski, Wolfgang E.;
- Matek, Christian;
- Hoermann, Gregor;
- Axelsen, Eyvind W.;
- Marr, Carsten;
- Piehler, Armin P.
Publication type:
Article
Multi-scale modeling of GMP differentiation based on single-cell genealogies.
Published in:
FEBS Journal, 2012, v. 279, n. 18, p. 3488, doi. 10.1111/j.1742-4658.2012.08664.x
By:
- Marr, Carsten;
- Strasser, Michael;
- Schwarzfischer, Michael;
- Schroeder, Timm;
- Theis, Fabian J.
Publication type:
Article
Patterns of Subnet Usage Reveal Distinct Scales of Regulation in the Transcriptional Regulatory Network of Escherichia coli.
Published in:
PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000836
By:
- Marr, Carsten;
- Theis, Fabian J.;
- Liebovitch, Larry S.;
- Hütt, Marc-Thorsten
Publication type:
Article
Lineage marker synchrony in hematopoietic genealogies refutes the PU.1/GATA1 toggle switch paradigm.
Published in:
Nature Communications, 2018, v. 9, p. 1, doi. 10.1038/s41467-018-05037-3
By:
- Strasser, Michael K.;
- Hoppe, Philipp S.;
- Loeffler, Dirk;
- Kokkaliaris, Konstantinos D.;
- Schroeder, Timm;
- Theis, Fabian J.;
- Marr, Carsten
Publication type:
Article
Intronic microRNAs support their host genes by mediating synergistic and antagonistic regulatory effects.
Published in:
BMC Genomics, 2010, v. 11, p. 224, doi. 10.1186/1471-2164-11-224
By:
- Lutter, Dominik;
- Marr, Carsten;
- Krumsiek, Jan;
- Lang, Elmar W.;
- Theis, Fabian J.
Publication type:
Article
Wound infiltrating adipocytes are not myofibroblasts.
Published in:
Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38591-6
By:
- Kalgudde Gopal, Shruthi;
- Dai, Ruoxuan;
- Stefanska, Ania Maria;
- Ansari, Meshal;
- Zhao, Jiakuan;
- Ramesh, Pushkar;
- Bagnoli, Johannes W.;
- Correa-Gallegos, Donovan;
- Lin, Yue;
- Christ, Simon;
- Angelidis, Ilias;
- Lupperger, Valerio;
- Marr, Carsten;
- Davies, Lindsay C.;
- Enard, Wolfgang;
- Machens, Hans-Günther;
- Schiller, Herbert B.;
- Jiang, Dongsheng;
- Rinkevich, Yuval
Publication type:
Article
Explainable machine learning for profiling the immunological synapse and functional characterization of therapeutic antibodies.
Published in:
Nature Communications, 2023, p. 1, doi. 10.1038/s41467-023-43429-2
By:
- Shetab Boushehri, Sayedali;
- Essig, Katharina;
- Chlis, Nikolaos-Kosmas;
- Herter, Sylvia;
- Bacac, Marina;
- Theis, Fabian J.;
- Glasmacher, Elke;
- Marr, Carsten;
- Schmich, Fabian
Publication type:
Article
SimiRa: A tool to identify coregulation between microRNAs and RNA-binding proteins.
Published in:
RNA Biology, 2015, v. 12, n. 9, p. 998, doi. 10.1080/15476286.2015.1068496
By:
- Preusse, Martin;
- Marr, Carsten;
- Saunders, Sita;
- Maticzka, Daniel;
- Lickert, Heiko;
- Backofen, Rolf;
- Theis, Fabian
Publication type:
Article
Metabolic regulation of pluripotency and germ cell fate through α‐ketoglutarate.
Published in:
EMBO Journal, 2019, v. 38, n. 1, p. N.PAG, doi. 10.15252/embj.201899518
By:
- Tischler, Julia;
- Gruhn, Wolfram H;
- Reid, John;
- Allgeyer, Edward;
- Buettner, Florian;
- Marr, Carsten;
- Theis, Fabian;
- Simons, Ben D;
- Wernisch, Lorenz;
- Surani, M Azim
Publication type:
Article
Reoccurring neural stem cell divisions in the adult zebrafish telencephalon are sufficient for the emergence of aggregated spatiotemporal patterns.
Published in:
PLoS Biology, 2020, v. 18, n. 12, p. 1, doi. 10.1371/journal.pbio.3000708
By:
- Lupperger, Valerio;
- Marr, Carsten;
- Chapouton, Prisca
Publication type:
Article
Explainable AI identifies diagnostic cells of genetic AML subtypes.
Published in:
PLoS Digital Health, 2023, v. 1, n. 3, p. 1, doi. 10.1371/journal.pdig.0000187
By:
- Hehr, Matthias;
- Sadafi, Ario;
- Matek, Christian;
- Lienemann, Peter;
- Pohlkamp, Christian;
- Haferlach, Torsten;
- Spiekermann, Karsten;
- Marr, Carsten
Publication type:
Article
Network plasticity of pluripotency transcription factors in embryonic stem cells.
Published in:
Nature Cell Biology, 2015, v. 17, n. 10, p. 1235, doi. 10.1038/ncb3237
By:
- Hastreiter, Simon;
- Hoppe, Philipp S.;
- Loeffler, Dirk;
- Kokkaliaris, Konstantinos D.;
- Endele, Max;
- Schauberger, Bernhard;
- Hilsenbeck, Oliver;
- Skylaki, Stavroula;
- Hasenauer, Jan;
- Theis, Fabian J.;
- Schroeder, Timm;
- Filipczyk, Adam;
- Marr, Carsten;
- Feigelman, Justin;
- Schwarzfischer, Michael;
- Anastassiadis, Konstantinos
Publication type:
Article
Image analysis of neural stem cell division patterns in the zebrafish brain.
Published in:
Cytometry. Part A, 2018, v. 93, n. 3, p. 314, doi. 10.1002/cyto.a.23260
By:
- Lupperger, Valerio;
- Buggenthin, Felix;
- Chapouton, Prisca;
- Marr, Carsten
Publication type:
Article
InstantDL: an easy-to-use deep learning pipeline for image segmentation and classification.
Published in:
BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04037-3
By:
- Waibel, Dominik Jens Elias;
- Shetab Boushehri, Sayedali;
- Marr, Carsten
Publication type:
Article
Time-dependent propagators for stochastic models of gene expression: an analytical method.
Published in:
Journal of Mathematical Biology, 2018, v. 77, n. 2, p. 261, doi. 10.1007/s00285-017-1196-4
By:
- Veerman, Frits;
- Marr, Carsten;
- Popović, Nikola
Publication type:
Article
A geometric analysis of fast-slow models for stochastic gene expression.
Published in:
Journal of Mathematical Biology, 2016, v. 72, n. 1/2, p. 87, doi. 10.1007/s00285-015-0876-1
By:
- Popović, Nikola;
- Marr, Carsten;
- Swain, Peter
Publication type:
Article
Cytosolic S100A8/A9 promotes Ca<sup>2+</sup> supply at LFA-1 adhesion clusters during neutrophil recruitment.
Published in:
eLife, 2024, p. 1, doi. 10.7554/eLife.96810
By:
- Napoli, Matteo;
- Immler, Roland;
- Rohwedder, Ina;
- Lupperger, Valerio;
- Pfabe, Johannes;
- Pisfil, Mariano Gonzalez;
- Yevtushenko, Anna;
- Vogl, Thomas;
- Roth, Johannes;
- Salvermoser, Melanie;
- Dietzel, Steffen;
- Rupnik, Marjan Slak;
- Marr, Carsten;
- Walzog, Barbara;
- Sperandio, Markus;
- Pruenster, Monika
Publication type:
Article
Tens of images can suffice to train neural networks for malignant leukocyte detection.
Published in:
Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-86995-5
By:
- Schouten, Jens P. E.;
- Matek, Christian;
- Jacobs, Luuk F. P.;
- Buck, Michèle C.;
- Bošnački, Dragan;
- Marr, Carsten
Publication type:
Article
Correction: Reoccuring neural stem cell divisions in the adult zebrafish telencephalon are sufficient for the emergence of aggregated spatio-temporal patterns.
Published in:
2021
By:
- Lupperger, Valerio;
- Marr, Carsten;
- Chapouton, Prisca
Publication type:
Correction Notice
Cellular connectomes as arbiters of local circuit models in the cerebral cortex.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22856-z
By:
- Klinger, Emmanuel;
- Motta, Alessandro;
- Marr, Carsten;
- Theis, Fabian J.;
- Helmstaedter, Moritz
Publication type:
Article
Injury triggers fascia fibroblast collective cell migration to drive scar formation through N-cadherin.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-19425-1
By:
- Jiang, Dongsheng;
- Christ, Simon;
- Correa-Gallegos, Donovan;
- Ramesh, Pushkar;
- Kalgudde Gopal, Shruthi;
- Wannemacher, Juliane;
- Mayr, Christoph H.;
- Lupperger, Valerio;
- Yu, Qing;
- Ye, Haifeng;
- Mück-Häusl, Martin;
- Rajendran, Vijayanand;
- Wan, Li;
- Liu, Juan;
- Mirastschijski, Ursula;
- Volz, Thomas;
- Marr, Carsten;
- Schiller, Herbert B.;
- Rinkevich, Yuval
Publication type:
Article
RedTell: an AI tool for interpretable analysis of red blood cell morphology.
Published in:
Frontiers in Physiology, 2023, p. 1, doi. 10.3389/fphys.2023.1058720
By:
- Sadafi, Ario;
- Bordukova, Maria;
- Makhro, Asya;
- Navab, Nassir;
- Bogdanova, Anna;
- Marr, Carsten
Publication type:
Article
Hierarchical Differentiation of Myeloid Progenitors Is Encoded in the Transcription Factor Network.
Published in:
PLoS ONE, 2011, v. 6, n. 8, p. 1, doi. 10.1371/journal.pone.0022649
By:
- Krumsiek, Jan;
- Marr, Carsten;
- Schroeder, Timm;
- Theis, Fabian J.
Publication type:
Article
Tissue-Specific Target Analysis of Disease-Associated MicroRNAs in Human Signaling Pathways.
Published in:
PLoS ONE, 2010, v. 5, n. 6, p. 1, doi. 10.1371/journal.pone.0011154
By:
- Kowarsch, Andreas;
- Marr, Carsten;
- Schmidl, Daniel;
- Ruepp, Andreas;
- Theis, Fabian J.
Publication type:
Article
Software tools for single-cell tracking and quantification of cellular and molecular properties.
Published in:
Nature Biotechnology, 2016, v. 34, n. 7, p. 703, doi. 10.1038/nbt.3626
By:
- Hilsenbeck, Oliver;
- Schwarzfischer, Michael;
- Skylaki, Stavroula;
- Schauberger, Bernhard;
- Hoppe, Philipp S;
- Loeffler, Dirk;
- Kokkaliaris, Konstantinos D;
- Hastreiter, Simon;
- Skylaki, Eleni;
- Filipczyk, Adam;
- Strasser, Michael;
- Buggenthin, Felix;
- Feigelman, Justin S;
- Krumsiek, Jan;
- van den Berg, Adrianus J J;
- Endele, Max;
- Etzrodt, Martin;
- Marr, Carsten;
- Theis, Fabian J;
- Schroeder, Timm
Publication type:
Article
Altered expression response upon repeated gene repression in single yeast cells.
Published in:
PLoS Computational Biology, 2022, v. 18, n. 10, p. 1, doi. 10.1371/journal.pcbi.1010640
By:
- Schuh, Lea;
- Kukhtevich, Igor;
- Bheda, Poonam;
- Schulz, Melanie;
- Bordukova, Maria;
- Schneider, Robert;
- Marr, Carsten
Publication type:
Article