Works by Marks, Hendrik

Results: 17

Epigenetic Regulation of Learning and Memory by Drosophila EHMT/G9a.

Published in:

PLoS Biology, 2011, v. 9, n. 1, p. 1, doi. 10.1371/journal.pbio.1000569

By:

Kramer, Jamie M.;
Kochinke, Korinna;
Oortveld, Merel A. W.;
Marks, Hendrik;
Kramer, Daniela;
de Jong, Eiko K.;
Asztalos, Zoltan;
Westwood, J. Timothy;
Stunnenberg, Hendrik G.;
Sokolowski, Marla B.;
Keleman, Krystyna;
Huiqing Zhou;
van Bokhoven, Hans;
Schenck, Annette

Publication type:

Article

STARR-seq identifies active, chromatin-masked, and dormant enhancers in pluripotent mouse embryonic stem cells.

Published in:

Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02156-3

By:

Peng, Tianran;
Zhai, Yanan;
Atlasi, Yaser;
ter Huurne, Menno;
Marks, Hendrik;
Stunnenberg, Hendrik G.;
Megchelenbrink, Wout

Publication type:

Article

Allele-specific RNA-seq expression profiling of imprinted genes in mouse isogenic pluripotent states.

Published in:

Epigenetics & Chromatin, 2019, v. 12, n. 1, p. N.PAG, doi. 10.1186/s13072-019-0259-8

By:

Dirks, René A. M.;
van Mierlo, Guido;
Kerstens, Hindrik H. D.;
Bernardo, Andreia S.;
Kobolák, Julianna;
Bock, István;
Maruotti, Julien;
Pedersen, Roger A.;
Dinnyés, András;
Huynen, Martijn A.;
Jouneau, Alice;
Marks, Hendrik

Publication type:

Article

The PinkThing for analysing ChIP profiling data in their genomic context.

Published in:

BMC Research Notes, 2013, v. 6, n. 1, p. 1, doi. 10.1186/1756-0500-6-133

By:

Nielsen, Fiona G;
Kooyman, Maarten;
Kensche, Philip;
Marks, Hendrik;
Stunnenberg, Henk;
Huynen, Martijn

Publication type:

Article

H3K27me3 at pericentromeric heterochromatin is a defining feature of the early mouse blastocyst.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-17730-x

By:

Pailles, Mélanie;
Hirlemann, Mélanie;
Brochard, Vincent;
Chebrout, Martine;
Oudin, Jean-François;
Marks, Hendrik;
Jouneau, Alice;
Bonnet-Garnier, Amélie

Publication type:

Article

A Mass Spectrometry Survey of Chromatin‐Associated Proteins in Pluripotency and Early Lineage Commitment.

Published in:

Proteomics, 2019, v. 19, n. 14, p. N.PAG, doi. 10.1002/pmic.201900047

By:

Mierlo, Guido;
Wester, Roelof Alexander;
Marks, Hendrik

Publication type:

Article

Genome-wide epigenomic profiling for biomarker discovery.

Published in:

Clinical Epigenetics, 2016, v. 8, p. 1, doi. 10.1186/s13148-016-0284-4

By:

Dirks, René A. M.;
Stunnenberg, Hendrik G.;
Marks, Hendrik

Publication type:

Article

Stem cell culture conditions affect in vitro differentiation potential and mouse gastruloid formation.

Published in:

PLoS ONE, 2025, v. 20, n. 3, p. 1, doi. 10.1371/journal.pone.0317309

By:

Blotenburg, Marloes;
Suurenbroek, Lianne;
Bax, Danique;
de Visser, Joëlle;
Bhardwaj, Vivek;
Braccioli, Luca;
de Wit, Elzo;
van Boxtel, Antonius;
Marks, Hendrik;
Zeller, Peter

Publication type:

Article

Terminal keratinocyte differentiation in vitro is associated with a stable DNA methylome.

Published in:

Experimental Dermatology, 2021, v. 30, n. 8, p. 1023, doi. 10.1111/exd.14153

By:

Smits, Jos P. H.;
Dirks, René A. M.;
Qu, Jieqiong;
Oortveld, Merel A. W.;
Brinkman, Arie B.;
Zeeuwen, Patrick L. J. M.;
Schalkwijk, Joost;
Zhou, Huiqing;
Marks, Hendrik;
van den Bogaard, Ellen H.

Publication type:

Article

An efficient method for generation of bi-allelic null mutant mouse embryonic stem cells and its application for investigating epigenetic modifiers.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 21, p. 1, doi. 10.1093/nar/gkx811

By:

Fisher, Cynthia L.;
Marks, Hendrik;
Ting-yin Cho, Lily;
Andrews, Robert;
Wormald, Sam;
Carroll, Thomas;
Iyer, Vivek;
Tate, Peri;
Rosen, Barry;
Stunnenberg, Hendrik G.;
Fisher, Amanda G.;
Skarnes, William C.

Publication type:

Article

Dynamics of gene silencing during X inactivation using allele-specific RNA-seq.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0698-x

By:

Marks, Hendrik;
Kerstens, Hindrik H. D.;
Barakat, Tahsin Stefan;
Splinter, Erik;
Dirks, René A. M.;
van Mierlo, Guido;
Joshi, Onkar;
Shuang-Yin Wang;
Babak, Tomas;
Albers, Cornelis A.;
Kalkan, Tüzer;
Smith, Austin;
Jouneau, Alice;
de Laat, Wouter;
Gribnau, Joost;
Stunnenberg, Hendrik G.

Publication type:

Article

Dynamics of gene silencing during X inactivation using allele-specific RNA-seq.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 149, doi. 10.1186/s13059-015-0698-x

By:

Marks, Hendrik;
Kerstens, Hindrik H. D.;
Barakat, Tahsin Stefan;
Splinter, Erik;
Dirks, René A. M.;
van Mierlo, Guido;
Joshi, Onkar;
Shuang-Yin Wang;
Babak, Tomas;
Albers, Cornelis A.;
Kalkan, Tüzer;
Smith, Austin;
Jouneau, Alice;
de Laat, Wouter;
Gribnau, Joost;
Stunnenberg, Hendrik G.

Publication type:

Article

Cholangiocyte organoids from human bile retain a local phenotype and can repopulate bile ducts in vitro.

Published in:

Clinical & Translational Medicine, 2021, v. 11, n. 12, p. 1, doi. 10.1002/ctm2.566

By:

Roos, Floris J. M.;
Haoyu Wu;
Willemse, Jorke;
Lieshout, Ruby;
Albarinos, Laura A. Muñoz;
Yik-Yang Kan;
Poley, Jan-Werner;
Bruno, Marco J.;
de Jonge, Jeroen;
Bártfai, Richard;
Marks, Hendrik;
IJzermans, Jan N. M.;
Verstegen, Monique M. A.;
van der Laan, Luc J. W.

Publication type:

Article

Dynamic CpG methylation delineates subregions within super-enhancers selectively decommissioned at the exit from naive pluripotency.

Published in:

Nature Communications, 2020, v. 11, p. 1, doi. 10.1038/s41467-020-14916-7

By:

Bell, Emma;
Curry, Edward W.;
Megchelenbrink, Wout;
Jouneau, Luc;
Brochard, Vincent;
Tomaz, Rute A.;
Mau, King Hang T.;
Atlasi, Yaser;
de Souza, Roshni A.;
Marks, Hendrik;
Stunnenberg, Hendrik G.;
Jouneau, Alice;
Azuara, Véronique

Publication type:

Article

An RNA-Seq Strategy to Detect the Complete Coding and Non-Coding Transcriptome Including Full-Length Imprinted Macro ncRNAs.

Published in:

PLoS ONE, 2011, v. 6, n. 11, p. 1, doi. 10.1371/journal.pone.0027288

By:

Ru Huang;
Jaritz, Markus;
Guenzl, Philipp;
Vlatkovic, Irena;
Sommer, Andreas;
Tamir, Ido M.;
Marks, Hendrik;
Klampfl, Thorsten;
Kralovics, Robert;
Stunnenberg, Hendrik G.;
Barlow, Denise P.;
Pauler, Florian M.

Publication type:

Article

A role for cohesin in T-cell-receptor rearrangement and thymocyte differentiation.

Published in:

Nature, 2011, v. 476, n. 7361, p. 467, doi. 10.1038/nature10312

By:

Seitan, Vlad C.;
Hao, Bingtao;
Tachibana-Konwalski, Kikuë;
Lavagnolli, Thais;
Mira-Bontenbal, Hegias;
Brown, Karen E.;
Teng, Grace;
Carroll, Tom;
Terry, Anna;
Horan, Katie;
Marks, Hendrik;
Adams, David J.;
Schatz, David G.;
Aragon, Luis;
Fisher, Amanda G.;
Krangel, Michael S.;
Nasmyth, Kim;
Merkenschlager, Matthias

Publication type:

Article

Miniaturised interaction proteomics on a microfluidic platform with ultra-low input requirements.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-09533-y

By:

Furlan, Cristina;
Dirks, René A. M.;
Thomas, Peter C.;
Jones, Robert C.;
Wang, Jing;
Lynch, Mark;
Marks, Hendrik;
Vermeulen, Michiel

Publication type:

Article