Works matching AU Markowitz, Victor

Results: 74
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    Annotation of metagenome short reads using proxygenes.

    Published in:
    Bioinformatics, 2008, v. 24, n. 16, p. i7, doi. 10.1093/bioinformatics/btn276
    By:
    • Daniel Dalevi;
    • Natalia N. Ivanova;
    • Konstantinos Mavromatis;
    • Sean D. Hooper;
    • Ernest Szeto;
    • Philip Hugenholtz;
    • Nikos C. Kyrpides;
    • Victor M. Markowitz
    Publication type:
    Article
    3

    Minimum information about a microarray experiment (MIAME)?toward standards for microarray data.

    Published in:
    Nature Genetics, 2001, v. 29, n. 4, p. 365, doi. 10.1038/ng1201-365
    By:
    • Brazma, Alvis;
    • Hingamp, Pascal;
    • Quackenbush, John;
    • Sherlock, Gavin;
    • Spellman, Paul;
    • Stoeckert, Chris;
    • Aach, John;
    • Ansorge, Wilhelm;
    • Ball, Catherine A.;
    • Causton, Helen C.;
    • Gaasterland, Terry;
    • Glenisson, Patrick;
    • Holstege, Frank C.P.;
    • Kim, Irene F.;
    • Markowitz, Victor;
    • Matese, John C.;
    • Parkinson, Helen;
    • Robinson, Alan;
    • Sarkans, Ugis
    Publication type:
    Article
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    High-quality draft genome sequence of Ensifer meliloti Mlalz-1, a microsymbiont of Medicago laciniata (L.) miller collected in Lanzarote, Canary Islands, Spain.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0270-2
    By:
    • Meor Osman, Wan Adnawani;
    • van Berkum, Peter;
    • León-Barrios, Milagros;
    • Velázquez, Encarna;
    • Elia, Patrick;
    • Rui Tian;
    • Ardley, Julie;
    • Gollagher, Margaret;
    • Seshadri, Rekha;
    • Reddy, T. B. K.;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Pati, Amrita;
    • Markowitz, Victor;
    • Baeshen, Mohamed N.;
    • Nabeeh Baeshen, Naseebh;
    • Kyrpides, Nikos;
    • Reeve, Wayne
    Publication type:
    Article
    7

    High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482<sup>T</sup>, isolated from raw cow milk.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0242-6
    By:
    • Laviad-Shitrit, Sivan;
    • Göker, Markus;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Stamatis, Dimitrios;
    • Reddy, T. B. K.;
    • Daum, Chris;
    • Shapiro, Nicole;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Halpern, Malka
    Publication type:
    Article
    8

    High-quality draft genome sequence of Rhizobium mesoamericanum strain STM6155, a Mimosa pudica microsymbiont from New Caledonia.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-016-0212-4
    By:
    • Klonowska, Agnieszka;
    • López-López, Aline;
    • Moulin, Lionel;
    • Ardley, Julie;
    • Gollagher, Margaret;
    • Marinova, Dora;
    • Tian, Rui;
    • Huntemann, Marcel;
    • Reddy, T. B. K.;
    • Varghese, Neha;
    • Woyke, Tanja;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Seshadri, Rekha;
    • Baeshen, Mohamed N.;
    • Baeshen, Nabih A.;
    • Kyrpides, Nikos;
    • Reeve, Wayne
    Publication type:
    Article
    9

    Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050<sup>T</sup> (DSM 19838<sup>T</sup>) and Gramella portivictoriae UST040801-001<sup>T</sup> (DSM 23547<sup>T</sup>), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0163-9
    By:
    • Panschin, Irina;
    • Sixing Huang;
    • Meier-Kolthoff, Jan P.;
    • Tindall, Brian J.;
    • Rohde, Manfred;
    • Verbarg, Susanne;
    • Lapidus, Alla;
    • Han, James;
    • Trong, Stephan;
    • Haynes, Matthew;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Mavromatis, Konstantinos;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Göker, Markus;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.
    Publication type:
    Article
    10

    Permanent draft genome of Thermithiobacillus tepidarius DSM 3134T, a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia.

    Published in:
    Standards in Genomic Sciences, 2016, p. 1, doi. 10.1186/s40793-016-0188-0
    By:
    • Boden, Rich;
    • Hutt, Lee P.;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Stamatis, Dimitrios;
    • Reddy, Tatiparthi;
    • Chew Yee Ngan;
    • Daum, Chris;
    • Shapiro, Nicole;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Kyrpides, Nikos
    Publication type:
    Article
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    High quality draft genome sequences of Pseudomonas fulva DSM 17717<sup>T</sup>, Pseudomonas parafulva DSM 17004<sup>T</sup> and Pseudomonas cremoricolorata DSM 17059<sup>T</sup> type strains.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0178-2
    By:
    • Peña, Arantxa;
    • Busquets, Antonio;
    • Gomila, Margarita;
    • Mulet, Magdalena;
    • Gomila, Rosa M.;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Markowitz, Victor;
    • García-Valdés, Elena;
    • Göker, Markus;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos;
    • Lalucat, Jorge
    Publication type:
    Article
    13

    Complete genome of Nitrosospira briensis C-128, an ammonia-oxidizing bacterium from agricultural soil.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0168-4
    By:
    • Rice, Marlen C.;
    • Norton, Jeanette M.;
    • Valois, Frederica;
    • Bollmann, Annette;
    • Bottomley, Peter J.;
    • Klotz, Martin G.;
    • Laanbroek, Hendrikus J.;
    • Suwa, Yuichi;
    • Stein, Lisa Y.;
    • Sayavedra-Soto, Luis;
    • Woyke, Tanja;
    • Shapiro, Nicole;
    • Goodwin, Lynne A.;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Kyrpides, Nikos;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Markowitz, Victor
    Publication type:
    Article
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    High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0157-7
    By:
    • Gehlot, Hukam Singh;
    • Ardley, Julie;
    • Tak, Nisha;
    • Rui Tian;
    • Poonar, Neetu;
    • Meghwal, Raju R.;
    • Rathi, Sonam;
    • Tiwari, Ravi;
    • Adnawani, Wan;
    • Seshadri, Rekha;
    • Reddy, T. B. K.;
    • Pati, Amrita;
    • Woyke, Tanja;
    • Pillay, Manoj;
    • Markowitz, Victor;
    • Baeshen, Mohammed N.;
    • Al-Hejin, Ahmed M.;
    • Ivanova, Natalia;
    • Kyrpides, Nikos;
    • Reeve, Wayne
    Publication type:
    Article
    16

    High-quality draft genome sequence of Flavobacterium suncheonense GH29-5<sup>T</sup> (DSM 17707<sup>T</sup>) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5<sup>T</sup>.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0159-5
    By:
    • Tashkandy, Nisreen;
    • Sabban, Sari;
    • Fakieh, Mohammad;
    • Meier-Kolthoff, Jan P.;
    • Sixing Huang;
    • Tindall, Brian J.;
    • Rohde, Manfred;
    • Baeshen, Mohammed N.;
    • Baeshen, Nabih A.;
    • Lapidus, Alla;
    • Copeland, Alex;
    • Pillay, Manoj;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Göker, Markus;
    • Klenk, Hans-Peter
    Publication type:
    Article
    17

    The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4).

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0138-x
    By:
    • Huntemann, Marcel;
    • Ivanova, Natalia;
    • Mavromatis, Konstantinos;
    • Tripp, H.;
    • Paez-Espino, David;
    • Tennessen, Kristin;
    • Palaniappan, Krishnaveni;
    • Szeto, Ernest;
    • Pillay, Manoj;
    • Chen, I-Min;
    • Pati, Amrita;
    • Nielsen, Torben;
    • Markowitz, Victor;
    • Kyrpides, Nikos
    Publication type:
    Article
    18

    High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409 with an incomplete denitrification pathway.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0140-3
    By:
    • Zhou, En-Min;
    • Murugapiran, Senthil;
    • Mefferd, Chrisabelle;
    • Liu, Lan;
    • Xian, Wen-Dong;
    • Yin, Yi-Rui;
    • Ming, Hong;
    • Yu, Tian-Tian;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Stamatis, Dimitrios;
    • Reddy, T.;
    • Ngan, Chew;
    • Daum, Chris;
    • Shapiro, Nicole;
    • Markowitz, Victor
    Publication type:
    Article
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    High quality draft genome sequence of Meganema perideroedes str. Gr1<sup>T</sup> and a proposal for its reclassification to the family Meganemaceae fam. nov.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0013-1
    By:
    • McIlroy, Simon J.;
    • Lapidus, Alla;
    • Thomsen, Trine R.;
    • Han, James;
    • Haynes, Matthew;
    • Lobos, Elizabeth;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Markowitz, Victor;
    • Verbarg, Susanne;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos;
    • Nielsen, Per H.
    Publication type:
    Article
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    High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7<sup>T</sup>, and emended description of the genus Halotalea.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0052-7
    By:
    • Ntougias, Spyridon;
    • Lapidus, Alla;
    • Copeland, Alex;
    • Reddy, T. B. K.;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Markowitz, Victor M.;
    • Klenk, Hans-Peter;
    • Woyke, Tanja;
    • Fasseas, Constantinos;
    • Kyrpides, Nikos C.;
    • Zervakis, Georgios I.
    Publication type:
    Article
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    Genome sequence of the Medicago-nodulating Ensifer meliloti commercial inoculant strain RRI128.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 602, doi. 10.4056/sigs.4929626
    By:
    • Reeve, Wayne;
    • Ballard, Ross;
    • Drew, Elizabeth;
    • Tian, Rui;
    • Bräu, Lambert;
    • Goodwin, Lynne;
    • Huntemann, Marcel;
    • Han, James;
    • Tatiparthi, Reddy;
    • Chen, Amy;
    • Mavrommatis, Konstantinos;
    • Markowitz, Victor;
    • Palaniappan, Krishna;
    • Ivanova, Natalia;
    • Pati, Amrita;
    • Woyke, Tanja;
    • Kyrpides, Nikos
    Publication type:
    Article
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    High quality draft genome sequence of Brachymonas chironomi AIMA4T (DSM 19884<sup>T</sup>) isolated from a Chironomus sp. egg mass.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0010-4
    By:
    • Laviad, Sivan;
    • Lapidus, Alla;
    • Han, James;
    • Haynes, Matthew;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Mavromatis, Konstantinos;
    • Lang, Elke;
    • Rohde, Manfred;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Halpern, Malka
    Publication type:
    Article
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    Genome sequence of Ensifer arboris strain LMG 14919; a microsymbiont of the legume Prosopis chilensis growing in Kosti, Sudan.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 473, doi. 10.4056/sigs.4828625
    By:
    • Reeve, Wayne;
    • Tian, Rui;
    • Bräu, Lambert;
    • Goodwin, Lynne;
    • Munk, Christine;
    • Detter, Chris;
    • Tapia, Roxanne;
    • Han, Cliff;
    • Liolios, Konstantinos;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Woyke, Tanja;
    • Mavrommatis, Konstantinos;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Kyrpides, Nikos;
    • Willems, Anne
    Publication type:
    Article
    39

    High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1<sup>T</sup> (DSM 17521<sup>T</sup>) isolated from muddy waters of a drainage system in Chandigarh, India.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-8
    By:
    • Mukherjee, Supratim;
    • Lapidus, Alla;
    • Shapiro, Nicole;
    • Jan-Fang Cheng;
    • Han, James;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Amy Chen;
    • Palaniappan, Krishna;
    • Spring, Stefan;
    • Göker, Markus;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Tindall, Brian J.;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Pati, Amrita
    Publication type:
    Article
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    Genome sequence of Ensifer medicae strain WSM1115; an acid-tolerant Medicago-nodulating microsymbiont from Samothraki, Greece.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 514, doi. 10.4056/sigs.4938652
    By:
    • Reeve, Wayne;
    • Ballard, Ross;
    • Howieson, John;
    • Drew, Elizabeth;
    • Tian, Rui;
    • Bräu, Lambert;
    • Munk, Christine;
    • Davenport, Karen;
    • Chain, Patrick;
    • Goodwin, Lynne;
    • Pagani, Ioanna;
    • Huntemann, Marcel;
    • Mavrommatis, Konstantinos;
    • Pati, Amrita;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Kyrpides, Nikos
    Publication type:
    Article
    42

    Draft genome sequence of Halomonas lutea strain YIM 91125<sup>T</sup> (DSM 23508<sup>T</sup>) isolated from the alkaline Lake Ebinur in Northwest China.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-1
    By:
    • Gao, Xiao-Yang;
    • Zhi, Xiao-Yang;
    • Li, Hong-Wei;
    • Yu Zhou;
    • Alla Lapidus;
    • James Han;
    • Haynes, Matthew;
    • Lobos, Elizabeth;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Mavromatis, Konstantinos;
    • Tindall, Brian J.;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Wen-Jun Li
    Publication type:
    Article
    43

    Genome sequence of Rhizobium leguminosarum bv trifolii strain WSM1689, the microsymbiont of the one flowered clover Trifolium uniflorum.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 527, doi. 10.4056/sigs.4988693
    By:
    • Terpolilli, Jason;
    • Rui, Tian;
    • Yates, Ron;
    • Howieson, John;
    • Poole, Philip;
    • Munk, Christine;
    • Tapia, Roxanne;
    • Han, Cliff;
    • Markowitz, Victor;
    • Tatiparthi, Reddy;
    • Mavrommatis, Konstantinos;
    • Ivanova, Natalia;
    • Pati, Amrita;
    • Goodwin, Lynne;
    • Woyke, Tanja;
    • Kyrpides, Nikos;
    • Reeve, Wayne
    Publication type:
    Article
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    High quality draft genome sequence of the slightly halophilic bacterium Halomonas zhanjiangensis type strain JSM 078169T (DSM 21076T) from a sea urchin in southern China.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1020, doi. 10.4056/sigs.5449586
    By:
    • Zhou, Yu;
    • Li, Rui;
    • Gao, Xiao-Yang;
    • Lapidus, Alla;
    • Han, James;
    • Haynes, Matthew;
    • Lobos, Elizabeth;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Rohde, Manfred;
    • Mavromatis, Konstantinos;
    • Tindall, Brian;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos;
    • Li, Wen-Jun
    Publication type:
    Article
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    The complete genome sequence of Clostridium indolis DSM 755.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1089, doi. 10.4056/sigs.5281010
    By:
    • Biddle, Amy;
    • Leschine, Susan;
    • Huntemann, Marcel;
    • Han, James;
    • Chen, Amy;
    • Kyrpides, Nikos;
    • Markowitz, Victor;
    • Palaniappan, Krishna;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Ovchinnikova, Galina;
    • Schaumberg, Andrew;
    • Pati, Amrita;
    • Stamatis, Dimitrios;
    • Reddy, Tatiparthi;
    • Lobos, Elizabeth;
    • Goodwin, Lynne;
    • Nordberg, Henrik;
    • Cantor, Michael;
    • Hua, Susan
    Publication type:
    Article
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    Genome sequence of Ensifer meliloti strain WSM1022; a highly effective microsymbiont of the model legume Medicago truncatula A17.

    Published in:
    Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 315, doi. 10.4056/sigs.4608286
    By:
    • Terpolilli, Jason;
    • Hill, Yvette;
    • Tian, Rui;
    • Howieson, John;
    • Bräu, Lambert;
    • Goodwin, Lynne;
    • Han, James;
    • Liolios, Konstantinos;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Woyke, Tanja;
    • Mavromatis, Konstantinos;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Kyrpides, Nikos;
    • Reeve, Wayne
    Publication type:
    Article