Works matching AU Marino, Leonardo

Results: 78

Mammalian-wide interspersed repeat (MIR)-derived enhancers and the regulation of human gene expression.

Published in:

Mobile DNA, 2014, v. 5, n. 1, p. 1, doi. 10.1186/1759-8753-5-14

By:

Jjingo, Daudi;
Conley, Andrew B.;
Jianrong Wang;
Mariño-Ramírez, Leonardo;
Lunyak, Victoria V.;
Jordan, I. King

Publication type:

Article

Epigenetic histone modifications of human transposable elements: genome defense versus exaptation.

Published in:

Mobile DNA, 2010, v. 1, n. 1, p. 1, doi. 10.1186/1759-8753-1-2

By:

Huda, Ahsan;
Mariño-Ramírez, Leonardo;
Jordan, I. King

Publication type:

Article

Population Pharmacogenomics for Health Equity.

Published in:

Genes, 2023, v. 14, n. 10, p. 1840, doi. 10.3390/genes14101840

By:

Jordan, I. King;
Sharma, Shivam;
Mariño-Ramírez, Leonardo

Publication type:

Article

Isolation and mapping of self-assembling protein domains encoded by the Saccharomyces cerevisiae genome using λ repressor fusions.

Published in:

Yeast, 2002, v. 19, n. 7, p. 641, doi. 10.1002/yea.867

By:

Mariño-Ramírez, Leonardo;
Hu, James C.

Publication type:

Article

Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA.

Published in:

BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-226

By:

Polavarapu, Nalini;
Mariño-Ramírez, Leonardo;
Landsman, David;
McDonald, John F.;
Jordan, I. King

Publication type:

Article

Alignments anchored on genomic landmarks can aid in the identification of regulatory elements.

Published in:

Bioinformatics, 2005, v. 21, p. i440, doi. 10.1093/bioinformatics/bti1028

By:

Tharakaraman, Kannan;
Mariño-Ramírez, Leonardo;
Sheetlin, Sergey;
Landsman, David;
Spouge, John L.

Publication type:

Article

Alignments anchored on genomic landmarks can aid in the identification of regulatory elements.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i440, doi. 10.1093/bioinformatics/bti1028

By:

Kannan Tharakaraman;
Leonardo Mariño-Ramírez

Publication type:

Article

Sliding Motility, Biofilm Formation, and Glycopeptidolipid Production in Mycobacterium colombiense Strains.

Published in:

BioMed Research International, 2015, v. 2015, p. 1, doi. 10.1155/2015/419549

By:

Maya-Hoyos, Milena;
Leguizamón, John;
Mariño-Ramírez, Leonardo;
Soto, Carlos Y.

Publication type:

Article

Microevolution of Anthrax from a Young Ancestor (M.A.Y.A.) Suggests a Soil-Borne Life Cycle of Bacillus anthracis.

Published in:

PLoS ONE, 2015, v. 10, n. 8, p. 1, doi. 10.1371/journal.pone.0135346

By:

Braun, Peter;
Grass, Gregor;
Aceti, Angela;
Serrecchia, Luigina;
Affuso, Alessia;
Marino, Leonardo;
Grimaldi, Stefania;
Pagano, Stefania;
Hanczaruk, Matthias;
Georgi, Enrico;
Northoff, Bernd;
Schöler, Anne;
Schloter, Michael;
Antwerpen, Markus;
Fasanella, Antonio

Publication type:

Article

Identification of Immunity Related Genes to Study the <i>Physalis peruviana</i> – <i>Fusarium oxysporum</i> Pathosystem.

Published in:

PLoS ONE, 2013, v. 8, n. 7, p. 1, doi. 10.1371/journal.pone.0068500

By:

Enciso-Rodríguez, Felix E.;
González, Carolina;
Rodríguez, Edwin A.;
López, Camilo E.;
Landsman, David;
Barrero, Luz Stella;
Mariño-Ramírez, Leonardo

Publication type:

Article

A Global Genome Segmentation Method for Exploration of Epigenetic Patterns.

Published in:

PLoS ONE, 2012, v. 7, n. 10, p. 1, doi. 10.1371/journal.pone.0046811

By:

Steiner, Lydia;
Hopp, Lydia;
Wirth, Henry;
Galle, Jörg;
Binder, Hans;
Prohaska, Sonja J.;
Mariño-Ramírez, Leonardo;
Rohlf, Thimo

Publication type:

Article

Bovine ncRNAs Are Abundant, Primarily Intergenic, Conserved and Associated with Regulatory Genes.

Published in:

PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0042638

By:

Zhipeng Qu;
Adelson, David L.;
Mariño-Ramírez, Leonardo

Publication type:

Article

ChIPnorm: A Statistical Method for Normalizing and Identifying Differential Regions in Histone Modification ChIP-seq Libraries.

Published in:

PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0039573

By:

Nair, Nishanth Ulhas;
Das Sahu, Avinash;
Bucher, Philipp;
Moret, Bernard M. E.;
Mariño.-Ramírez, Leonardo

Publication type:

Article

Transcriptional Regulation of N-Acetylglutamate Synthase.

Published in:

PLoS ONE, 2012, v. 7, n. 2, p. 1, doi. 10.1371/journal.pone.0029527

By:

Heibel, Sandra Kirsch;
Lopez, Giselle Yvette;
Panglao, Maria;
Sodha, Sonal;
Mariño-Ramírez, Leonardo;
Tuchman, Mendel;
Caldovic, Ljubica

Publication type:

Article

Analysis of Biological Features Associated with Meiotic Recombination Hot and Cold Spots in Saccharomyces cerevisiae.

Published in:

PLoS ONE, 2011, v. 6, n. 12, p. 1, doi. 10.1371/journal.pone.0029711

By:

Hansen, Loren;
Nak-Kyeong Kim;
Mariño-Ramírez, Leonardo;
Landsman, David

Publication type:

Article

Prediction of Transposable Element Derived Enhancers Using Chromatin Modification Profiles.

Published in:

PLoS ONE, 2011, v. 6, n. 11, p. 1, doi. 10.1371/journal.pone.0027513

By:

Huda, Ahsan;
Tyagi, Eishita;
Mariño-Ramírez, Leonardo;
Bowen, Nathan J.;
Jjingo, Daudi;
Jordan, I. King

Publication type:

Article

Development and Characterization of Microsatellite Markers for the Cape Gooseberry Physalis peruviana.

Published in:

PLoS ONE, 2011, v. 6, n. 10, p. 1, doi. 10.1371/journal.pone.0026719

By:

Simbaqueba, Jaime;
Sánchez, Pilar;
Sanchez, Erika;
Zarantes, Victor Manuel Núñez;
Chacon, Maria Isabel;
Barrero, Luz Stella;
Mariño-Ramírez, Leonardo

Publication type:

Article

Expression Patterns of Protein Kinases Correlate with Gene Architecture and Evolutionary Rates.

Published in:

PLoS ONE, 2008, v. 3, n. 10, p. 1, doi. 10.1371/journal.pone.0003599

By:

Ogurtsov, Aleksey Y.;
Mariño-Ramírez, Leonardo;
Johnson, Gibbes R.;
Landsman, David;
Shabalina, Svetlana A.;
Spiridonov, Nikolay A.

Publication type:

Article

Multiple Evolutionary Solutions to Core Histone Gene Regulation.

Published in:

FASEB Journal, 2007, v. 21, n. 6, p. A1033, doi. 10.1096/fasebj.21.6.a1033-a

By:

Marino-Ramirez, Leonardo;
Jordan, I. King;
Landsman, David

Publication type:

Article

Ground Anthrax Bacillus Refined Isolation (GABRI) method for analyzing environmental samples with low levels of Bacillus anthracis contamination.

Published in:

BMC Microbiology, 2013, v. 13, n. 1, p. 1, doi. 10.1186/1471-2180-13-167

By:

Fasanella, Antonio;
Taranto, Pietro Di;
Garofolo, Giuliano;
Colao, Valeriana;
Marino, Leonardo;
Buonavoglia, Domenico;
Pedarra, Carmine;
Adone, Rosanna;
Hugh-Jones, Martin

Publication type:

Article

Banana (Musa acuminata) transcriptome profiling in response to rhizobacteria: Bacillus amyloliquefaciens Bs006 and Pseudomonas fluorescens Ps006.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-5763-5

By:

Gamez, Rocío M.;
Rodríguez, Fernando;
Vidal, Newton Medeiros;
Ramirez, Sandra;
Vera Alvarez, Roberto;
Landsman, David;
Mariño-Ramírez, Leonardo

Publication type:

Article

Ancestry-attenuated effects of socioeconomic deprivation on type 2 diabetes disparities in the All of Us cohort.

Published in:

BMC Global & Public Health, 2023, v. 1, n. 1, p. 1, doi. 10.1186/s44263-023-00025-2

By:

Lam, Vincent;
Sharma, Shivam;
Gupta, Sonali;
Spouge, John L.;
Jordan, I. King;
Mariño-Ramírez, Leonardo

Publication type:

Article

Detection of high heteroplasmy in complete loggerhead and hawksbill sea turtles mitochondrial genomes using RNAseq.

Published in:

Mitochondrial DNA. Part A, 2021, v. 32, n. 3, p. 106, doi. 10.1080/24701394.2021.1885389

By:

Delgado-Cano, David;
Mariño-Ramírez, Leonardo;
Hernández-Fernández, Javier

Publication type:

Article

"Burrata di Andria" PGI Cheese: Physicochemical and Microbiological Features.

Published in:

Foods, 2020, v. 9, n. 11, p. 1694, doi. 10.3390/foods9111694

By:

Di Cerbo, Alessandro;
Miraglia, Dino;
Marino, Leonardo;
Stocchi, Roberta;
Loschi, Anna Rita;
Fisichella, Stefano;
Cammertoni, Natalina;
Menchetti, Laura;
Farneti, Silvana;
Ranucci, David;
Branciari, Raffaella;
Rea, Stefano

Publication type:

Article

Associations of perceived discrimination with health outcomes and health disparities in the All of Us cohort.

Published in:

Journal of the American Medical Informatics Association, 2025, v. 32, n. 5, p. 823, doi. 10.1093/jamia/ocaf040

By:

Lam, Vincent;
Gupta, Sonali;
Jordan, I King;
Mariño-Ramírez, Leonardo

Publication type:

Article

Most of the tight positional conservation of transcription factor binding sites near the transcription start site reflects their colocalization within regulatory modules.

Published in:

BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-1354-5

By:

Acevedo-Luna, Natalia;
Mariño-Ramírez, Leonardo;
Halbert, Armand;
Hansen, Ulla;
Landsman, David;
Spouge, John L.

Publication type:

Article

Origin and Evolution of Human microRNAs From Transposable Elements.

Published in:

Genetics, 2007, v. 176, n. 2, p. 1323, doi. 10.1534/genetics.107.072553

By:

Piriyapongsa, Jittima;
Mariño-Ramírez, Leonardo;
Jordan, I. King

Publication type:

Article

CÓDIGO-Colombia: una herramienta para la salud pública de precisión en Colombia.

Published in:

Biomédica: Revista del Instituto Nacional de Salud, 2023, v. 43, p. 147

By:

Valderrama-Aguirre, Augusto;
Esteban Gallo, Juan;
Jordan, King;
Mariño-Ramírez, Leonardo

Publication type:

Article

1A - “One health” una aproximación a los determinantes de la salud desde la transectorialidad.

Published in:

Biomédica: Revista del Instituto Nacional de Salud, 2023, v. 43, p. 147

By:

Valderrama-Aguirre, Augusto;
Esteban Gallo, Juan;
Jordan, King;
Mariño-Ramírez, Leonardo

Publication type:

Article

Genómica y salud pública: riesgo genómico Vs. prevalencia de diabetes en dos poblaciones colombianas de Chocó y Antioquia.

Published in:

Biomédica: Revista del Instituto Nacional de Salud, 2017, v. 37, p. 202

By:

Valderrama-Aguirre, Augusto;
Chande, Aroon;
Rishishwar, Lavanya;
Conley, Andrew;
Norris, Emily;
Marino-Ramirez, Leonardo;
Medina-Rivas, Miguel;
Jordan, Irving King

Publication type:

Article

The histone database: A comprehensive resource for histones and histone fold-containing proteins.

Published in:

Proteins, 2006, v. 62, n. 4, p. 838, doi. 10.1002/prot.20814

By:

Mariño-Ramírez, Leonardo;
Hsu, Benjamin;
Baxevanis, Andreas D.;
Landsman, David

Publication type:

Article

HMGN1 Modulates Nucleosome Occupancy and DNase I Hypersensitivity at the CpG Island Promoters of Embryonic Stem Cells.

Published in:

Molecular & Cellular Biology, 2013, v. 33, n. 16, p. 3377, doi. 10.1128/MCB.00435-13

By:

Tao Deng;
Zhu, Z. Iris;
Shaofei Zhang;
Fenfei Leng;
Cherukuri, Srujana;
Hansen, Loren;
Mariño-Ramírez, Leonardo;
Meshorer, Eran;
Landsman, David;
Bustin, Michael

Publication type:

Article

HMGN1 Modulates Nucleosome Occupancy and DNase I Hypersensitivity at the CpG Island Promoters of Embryonic Stem Cells.

Published in:

Molecular & Cellular Biology, 2013, v. 33, n. 15, p. 3377, doi. 10.1128/MCB.00435-13

By:

Tao Deng;
Zhu, Z. Iris;
Shaofei Zhang;
Fenfei Leng;
Srujana Cherukuri;
Hansen, Loren;
Mariño-Ramírez, Leonardo;
Meshorer, Eran;
Landsman, David;
Bustin, Michael

Publication type:

Article

De novo assembly and functional annotation of blood transcriptome of loggerhead turtle, and in silico characterization of peroxiredoxins and thioredoxins.

Published in:

PeerJ, 2021, p. 1, doi. 10.7717/peerj.12395

By:

Hernández-Fernández, Javier;
Pinzón Velasco, Andrés Mauricio;
López Barrera, Ellie Anne;
Del Pilar Rodríguez Becerra, María;
Luis Villanueva-Cañas, José;
Alba, M. Mar;
Mariño Ramírez, Leonardo

Publication type:

Article

Structural analysis of leucine, lysine and tryptophan mitochondrial tRNA of nesting turtles Caretta caretta (Testudines: Chelonioidea) in the Colombian Caribbean.

Published in:

PeerJ, 2020, p. 1, doi. 10.7717/peerj.9204

By:

Infante-Rojas, Harvey;
Marino-Ramirez, Leonardo;
Hernández-Fernández, Javier

Publication type:

Article

GENÓMICA EN COLOMBIA: ANCESTRALIDAD Y APLICACIONES EN SALUD PÚBLICA.

Published in:

Duazary. Revista de la Facultad de Ciencias de la Salud, 2019, v. 16, p. 73

By:

Valderrama-Aguirre, Augusto;
Rishishwar, Lavanya;
Chande, Aroon T.;
Conley, Andrew C.;
Norris, Emily T.;
Rowell, Jessica;
Nagar, Shashwat D.;
Gallo, Juan Esteban;
Mariño-Ramírez, Leonardo;
Medina-Rivas, Miguel A.;
Jordan, I. King

Publication type:

Article

CHOCOGEN: ANCESTRÍA GENÉTICA Y SALUD EN EL PACÍFICO COLOMBIANO.

Published in:

Duazary. Revista de la Facultad de Ciencias de la Salud, 2019, v. 16, p. 47

By:

Conley, Andrew C.;
Rishishwar, Lavanya;
Nagar, Shashwat D.;
Norris, Emily T.;
Robledo-Moreno, A. Melissa;
Vélez, Sara;
Montes-Rodriguez, Camila;
Torres, Isaura;
Esteban Gallo, Juan;
Mariño-Ramírez, Leonardo;
Valderrama-Aguirre, Augusto;
Medina-Rivas, Miguel A.;
Jordan, I. King

Publication type:

Article

Complete mitochondrial genome of the nesting Colombian Caribbean Hawksbill Turtle.

Published in:

Mitochondrial DNA: Resources, 2017, v. 2, n. 1, p. 128, doi. 10.1080/23802359.2017.1292477

By:

Hernández-Fernández, Javier;
Beltrán-Torres, Gerson;
Mariño-Ramírez, Leonardo

Publication type:

Article

Benchmarking computational tools for polymorphic transposable element detection.

Published in:

Briefings in Bioinformatics, 2017, v. 18, n. 6, p. 908, doi. 10.1093/bib/bbw072

By:

Rishishwar, Lavanya;
Mariño-Ramírez, Leonardo;
Jordan, I. King

Publication type:

Article

Comparing Genetic and Socioenvironmental Contributions to Ethnic Differences in C-Reactive Protein.

Published in:

Frontiers in Genetics, 2021, v. 12, p. 1, doi. 10.3389/fgene.2021.738485

By:

Nagar, Shashwat Deepali;
Conley, Andrew B.;
Sharma, Shivam;
Rishishwar, Lavanya;
Jordan, I. King;
Mariño-Ramírez, Leonardo

Publication type:

Article

The Impact of Ethnicity and Genetic Ancestry on Disease Prevalence and Risk in Colombia.

Published in:

Frontiers in Genetics, 2021, v. 12, p. 1, doi. 10.3389/fgene.2021.690366

By:

Chande, Aroon T.;
Nagar, Shashwat Deepali;
Rishishwar, Lavanya;
Mariño-Ramírez, Leonardo;
Medina-Rivas, Miguel A.;
Valderrama-Aguirre, Augusto E.;
Jordan, I. King;
Gallo, Juan Esteban

Publication type:

Article

Landscape of racial and ethnic health disparities in the All of Us Research Program.

Published in:

Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae082

By:

Lam, Vincent;
Sharma, Shivam;
Spouge, John L;
Jordan, I. King;
Mariño-Ramírez, Leonardo

Publication type:

Article

Workflow and web application for annotating NCBI BioProject transcriptome data.

Published in:

Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax008

By:

Alvarez, Roberto Vera;
Vidal, Newton Medeiros;
Garzón-Martínez, Gina A.;
Barrero, Luz S.;
Landsman, David;
Mariño-Ramírez, Leonardo

Publication type:

Article

HistoneDB 2.0: a histone database with variants-an integrated resource to explore histones and their variants.

Published in:

Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw014

By:

Draizen, Eli J.;
Shaytan, Alexey K.;
Mariño-Ramírez, Leonardo;
Talbert, Paul B.;
Landsman, David;
Panchenko, Anna R.

Publication type:

Article

The Histone Database: an integrated resource for histones and histone fold-containing proteins.

Published in:

Database: The Journal of Biological Databases & Curation, 2011, v. 2011, p. 1, doi. 10.1093/database/bar048

By:

Mariño-Ramírez, Leonardo;
Levine, Kevin M.;
Morales, Mario;
Suiyuan Zhang;
Moreland, R. Travis;
Baxevanis, Andreas D.;
Landsman, David

Publication type:

Article

Global Regulation by the Yeast Spt10 Protein Is Mediated through Chromatin Structure and the Histone Upstream Activating Sequence Elements.

Published in:

Molecular & Cellular Biology, 2005, v. 25, n. 20, p. 9127, doi. 10.1128/MCB.25.20.9127-9137.2005

By:

Eriksson, Peter R.;
Mendiratta, Geetu;
McLaughlin, Neil B.;
Wolfsberg, Tyra G.;
Mariño-Ramírez, Leonardo;
Pompa, Tiffany A.;
Jainerin, Mohendra;
Landsman, David;
Chang-Hui Shen;
Clark, David J.

Publication type:

Article

Pathogen Prevalence in Cetaceans Stranded along the Italian Coastline between 2015 and 2020.

Published in:

Pathogens, 2024, v. 13, n. 9, p. 762, doi. 10.3390/pathogens13090762

By:

Grattarola, Carla;
Pietroluongo, Guido;
Belluscio, Donatella;
Berio, Enrica;
Canonico, Cristina;
Centelleghe, Cinzia;
Cocumelli, Cristiano;
Crotti, Silvia;
Denurra, Daniele;
Di Donato, Alessandra;
Di Francesco, Gabriella;
Di Guardo, Giovanni;
Di Nocera, Fabio;
Di Renzo, Ludovica;
Gavaudan, Stefano;
Giorda, Federica;
Lucifora, Giuseppe;
Marino, Leonardo;
Marcer, Federica;
Marsili, Letizia

Publication type:

Article

Differences in chemical, physical and microbiological characteristics of Italian burrata cheeses made in artisanal and industrial plants of Apulia Region.

Published in:

Italian Journal of Food Safety, 2016, v. 5, n. 3, p. 146, doi. 10.4081/ijfs.2016.5879

By:

Rea, Stefano;
Marino, Leonardo;
Stocchi, Roberta;
Branciari, Raffaella;
Loschi, Anna Rita;
Miraglia, Dino;
Ranucci, David

Publication type:

Article

Oxidative Stress Biomarkers in Erythrocytes of Captive Pre-Juvenile Loggerhead Turtles Following Acute Exposure to Methylmercury.

Published in:

Applied Sciences (2076-3417), 2020, v. 10, n. 10, p. 3602, doi. 10.3390/app10103602

By:

Hernández-Fernández, Javier;
López-Barrera, Ellie Anne;
Mariño-Ramírez, Leonardo;
Rodríguez-Becerra, Pilar;
Pinzón-Velasco, Andrés

Publication type:

Article

Rye: genetic ancestry inference at biobank scale.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 8, p. e44, doi. 10.1093/nar/gkad149

By:

Conley, Andrew B;
Rishishwar, Lavanya;
Ahmad, Maria;
Sharma, Shivam;
Norris, Emily T;
Jordan, I King;
Mariño-Ramírez, Leonardo

Publication type:

Article