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Estimating error rates for single molecule protein sequencing experiments.
- Published in:
- PLoS Computational Biology, 2024, v. 20, n. 7, p. 1, doi. 10.1371/journal.pcbi.1012258
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- Article
A Humanized CB1R Yeast Biosensor Enables Facile Screening of Cannabinoid Compounds.
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- International Journal of Molecular Sciences, 2024, v. 25, n. 11, p. 6060, doi. 10.3390/ijms25116060
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- Article
Systematic profiling of ale yeast protein dynamics across fermentation and repitching.
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- G3: Genes | Genomes | Genetics, 2024, v. 14, n. 3, p. 1, doi. 10.1093/g3journal/jkad293
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- Article
Protein nonadditive expression and solubility contribute to heterosis in Arabidopsis hybrids and allotetraploids.
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- Frontiers in Plant Science, 2023, p. 1, doi. 10.3389/fpls.2023.1252564
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- Article
Integrated modeling of the Nexin-dynein regulatory complex reveals its regulatory mechanism.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-41480-7
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- Article
Molecular complex detection in protein interaction networks through reinforcement learning.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05425-7
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- Article
Amino acid sequence assignment from single molecule peptide sequencing data using a two-stage classifier.
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- PLoS Computational Biology, 2023, v. 19, n. 5, p. 1, doi. 10.1371/journal.pcbi.1011157
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- Article
Does AlphaFold2 model proteins' intracellular conformations? An experimental test using cross-linking mass spectrometry of endogenous ciliary proteins.
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- Communications Biology, 2023, v. 6, n. 1, p. 1, doi. 10.1038/s42003-023-04773-7
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- Article
Native doublet microtubules from Tetrahymena thermophila reveal the importance of outer junction proteins.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-37868-0
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- Article
Integrative modeling reveals the molecular architecture of the intraflagellar transport A (IFT-A) complex.
- Published in:
- eLife, 2022, p. 1, doi. 10.7554/eLife.81977
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- Article
An open invitation to the Understudied Proteins Initiative.
- Published in:
- 2022
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- Publication type:
- Letter
Functional expression of opioid receptors and other human GPCRs in yeast engineered to produce human sterols.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30570-7
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- Article
HumanNet v3: an improved database of human gene networks for disease research.
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- Nucleic Acids Research, 2022, v. 50, n. D1, p. D632, doi. 10.1093/nar/gkab1048
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- Publication type:
- Article
Super.Complex: A supervised machine learning pipeline for molecular complex detection in protein-interaction networks.
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- PLoS ONE, 2021, v. 16, n. 12, p. 1, doi. 10.1371/journal.pone.0262056
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- Article
Discovery of new vascular disrupting agents based on evolutionarily conserved drug action, pesticide resistance mutations, and humanized yeast.
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- Genetics, 2021, v. 219, n. 1, p. 1, doi. 10.1093/genetics/iyab101
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- Article
hu.MAP 2.0: integration of over 15,000 proteomic experiments builds a global compendium of human multiprotein assemblies.
- Published in:
- Molecular Systems Biology, 2021, v. 17, n. 5, p. 1, doi. 10.15252/msb.202010016
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- Article
Improving integrative 3D modeling into low‐ to medium‐resolution electron microscopy structures with evolutionary couplings.
- Published in:
- Protein Science: A Publication of the Protein Society, 2021, v. 30, n. 5, p. 1006, doi. 10.1002/pro.4067
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- Article
Simplified geometric representations of protein structures identify complementary interaction interfaces.
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- Proteins, 2021, v. 89, n. 3, p. 348, doi. 10.1002/prot.26020
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- Article
Functional partitioning of a liquid-like organelle during assembly of axonemal dyneins.
- Published in:
- eLife, 2021, p. 1, doi. 10.7554/eLife.58662
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- Publication type:
- Article
Humanization of yeast genes with multiple human orthologs reveals functional divergence between paralogs.
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- PLoS Biology, 2020, v. 18, n. 5, p. 1, doi. 10.1371/journal.pbio.3000627
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- Article
Ancestral reconstruction of protein interaction networks.
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- PLoS Computational Biology, 2019, v. 15, n. 10, p. 1, doi. 10.1371/journal.pcbi.1007396
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- Article
Many Nuanced Evolutionary Consequences of Duplicated Genes.
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- Molecular Biology & Evolution, 2019, v. 36, n. 2, p. 304, doi. 10.1093/molbev/msy210
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- Article
HumanNet v2: human gene networks for disease research.
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- Nucleic Acids Research, 2019, v. 47, n. D1, p. D573, doi. 10.1093/nar/gky1126
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- Publication type:
- Article
Withdrawn as Duplicate: The many nuanced evolutionary consequences of duplicated genes.
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- Molecular Biology & Evolution, 2018, v. 35, n. 12, p. e1, doi. 10.1093/molbev/msy216
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- Publication type:
- Article
Highly parallel single-molecule identification of proteins in zeptomole-scale mixtures.
- Published in:
- Nature Biotechnology, 2018, v. 36, n. 11, p. 1076, doi. 10.1038/nbt.4278
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- Article
A highly parallel strategy for storage of digital information in living cells.
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- BMC Biotechnology, 2018, v. 18, n. 1, p. N.PAG, doi. 10.1186/s12896-018-0476-4
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- Publication type:
- Article
Identifying direct contacts between protein complex subunits from their conditional dependence in proteomics datasets.
- Published in:
- PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005625
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- Publication type:
- Article
GWAB: a web server for the network-based boosting of human genome-wide association data.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. W1, p. W154, doi. 10.1093/nar/gkx284
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- Publication type:
- Article
Integration of over 9,000 mass spectrometry experiments builds a global map of human protein complexes.
- Published in:
- Molecular Systems Biology, 2017, v. 13, n. 6, p. n/a, doi. 10.15252/msb.20167490
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- Publication type:
- Article
The E. coli molecular phenotype under different growth conditions.
- Published in:
- Scientific Reports, 2017, p. 45303, doi. 10.1038/srep45303
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- Publication type:
- Article
Large-scale analysis of post-translational modifications in E. coli under glucose-limiting conditions.
- Published in:
- BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3676-8
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- Publication type:
- Article
Predictability of Genetic Interactions from Functional Gene Modules.
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- G3: Genes | Genomes | Genetics, 2017, v. 7, n. 2, p. 617, doi. 10.1534/g3.116.035915
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- Article
Temporal stability and molecular persistence of the bone marrow plasma cell antibody repertoire.
- Published in:
- Nature Communications, 2016, v. 7, n. 12, p. 13838, doi. 10.1038/ncomms13838
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- Article
Towards Consensus Gene Ages.
- Published in:
- Genome Biology & Evolution, 2016, v. 8, n. 6, p. 1812, doi. 10.1093/gbe/evw113
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- Publication type:
- Article
Computational discovery of pathway-level genetic vulnerabilities in non-small-cell lung cancer.
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- Bioinformatics, 2016, v. 32, n. 9, p. 1373, doi. 10.1093/bioinformatics/btw010
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- Article
Efforts to make and apply humanized yeast.
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- Briefings in Functional Genomics, 2016, v. 15, n. 2, p. 155, doi. 10.1093/bfgp/elv041
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- Article
MouseNet v2: a database of gene networks for studying the laboratory mouse and eight other model vertebrates.
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- Nucleic Acids Research, 2016, v. 44, n. 1, p. D848, doi. 10.1093/nar/gkv1155
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- Article
Systematic comparison of variant calling pipelines using gold standard personal exome variants.
- Published in:
- Scientific Reports, 2015, p. 17875, doi. 10.1038/srep17875
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- Article
Controlled Measurement and Comparative Analysis of Cellular Components in E. coli Reveals Broad Regulatory Changes in Response to Glucose Starvation.
- Published in:
- PLoS Computational Biology, 2015, v. 11, n. 8, p. 1, doi. 10.1371/journal.pcbi.1004400
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- Article
Modes of Interaction between Individuals Dominate the Topologies of Real World Networks.
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- PLoS ONE, 2015, v. 10, n. 3, p. 1, doi. 10.1371/journal.pone.0121248
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- Article
The DEAH-box Helicase Dhr1 Dissociates U3 from the Pre-rRNA to Promote Formation of the Central Pseudoknot.
- Published in:
- PLoS Biology, 2015, v. 13, n. 2, p. 1, doi. 10.1371/journal.pbio.1002083
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- Publication type:
- Article
A Theoretical Justification for Single Molecule Peptide Sequencing.
- Published in:
- PLoS Computational Biology, 2015, v. 11, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004080
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- Article
MORPHIN: a web tool for human disease research by projecting model organism biology onto a human integrated gene network.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. W1, p. W147, doi. 10.1093/nar/gku434
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- Article
Bacteriophages use an expanded genetic code on evolutionary paths to higher fitness.
- Published in:
- Nature Chemical Biology, 2014, v. 10, n. 3, p. 178, doi. 10.1038/nchembio.1450
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- Publication type:
- Article
<i>Pseudomonas aeruginosa</i> Enhances Production of a Non-Alginate Exopolysaccharide during Long-Term Colonization of the Cystic Fibrosis Lung.
- Published in:
- PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0082621
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- Article
Prediction of gene-phenotype associations in humans, mice, and plants using phenologs.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-203
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- Publication type:
- Article
A Bacteriophage Tailspike Domain Promotes Self-Cleavage of a Human Membrane-Bound Transcription Factor, the Myelin Regulatory Factor MYRF.
- Published in:
- PLoS Biology, 2013, v. 11, n. 8, p. 1, doi. 10.1371/journal.pbio.1001624
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- Publication type:
- Article
Prediction and Validation of Gene-Disease Associations Using Methods Inspired by Social Network Analyses
- Published in:
- PLoS ONE, 2013, v. 8, n. 5, p. 1, doi. 10.1371/journal.pone.0058977
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- Publication type:
- Article
Transiently Transfected Purine Biosynthetic Enzymes Form Stress Bodies.
- Published in:
- PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0056203
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- Publication type:
- Article
RIDDLE: reflective diffusion and local extension reveal functional associations for unannotated gene sets via proximity in a gene network.
- Published in:
- Genome Biology, 2012, v. 13, n. 12, p. 1, doi. 10.1186/gb-2012-13-12-r125
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- Publication type:
- Article