Works by Marabotti, Anna

Results: 51

Assessment of the conformational features of vasoactive intestinal peptide in solution by limited proteolysis experiments.

Published in:

Biopolymers, 2006, v. 81, n. 2, p. 110, doi. 10.1002/bip.20385

By:

Stiuso, Paola;
Marabotti, Anna;
Facchiano, Angelo;
Lepretti, Marilena;
Dicitore, Alessandra;
Ferranti, Pasquale;
Cartenì, Maria

Publication type:

Article

Environment, dysbiosis, immunity and sex-specific susceptibility: A translational hypothesis for regressive autism pathogenesis.

Published in:

Nutritional Neuroscience, 2015, v. 18, n. 4, p. 145, doi. 10.1179/1476830513Y.0000000108

By:

Mezzelani, Alessandra;
Landini, Martina;
Facchiano, Francesco;
Raggi, Maria Elisabetta;
Villa, Laura;
Molteni, Massimo;
De Santis, Barbara;
Brera, Carlo;
Caroli, Anna Maria;
Milanesi, Luciano;
Marabotti, Anna

Publication type:

Article

Site-directed mutagenesis gives insights into substrate specificity of Sulfolobus solfataricus purine-specific nucleoside hydrolase.

Published in:

Annals of Microbiology, 2012, v. 62, n. 2, p. 881, doi. 10.1007/s13213-011-0379-2

By:

Porcelli, Marina;
Leo, Ester;
Marabotti, Anna;
Cacciapuoti, Giovanna

Publication type:

Article

A novel point mutation in the ligand-binding domain of the human glucocorticoid receptor (hGR) in a patient with glucocorticoid resistance.

Published in:

International Journal on Disability & Human Development (De Gruyter), 2007, v. 6, n. 1, p. 105, doi. 10.1515/ijdhd.2007.6.1.105

By:

Cannavò, Salvatore;
Karl, Michael;
Santarpia, Libero;
Facchiano, Angelo;
Marabotti, Anna;
Trimarchi, Francesco;
Benvenga, Salvatore

Publication type:

Article

Emerging role of carbonyl–carbonyl interactions in the classification of beta turns.

Published in:

Protein Science: A Publication of the Protein Society, 2024, v. 33, n. 2, p. 1, doi. 10.1002/pro.4868

By:

D'Arminio, Nancy;
Ruggiero, Valentina;
Pierri, Giovanni;
Marabotti, Anna;
Tedesco, Consiglia

Publication type:

Article

Computational analysis of the interactions of a novel cephalosporin derivative with β-lactamases.

Published in:

BMC Structural Biology, 2018, v. 18, n. 1, p. N.PAG, doi. 10.1186/s12900-018-0092-5

By:

Verdino, Anna;
Zollo, Felicia;
De Rosa, Margherita;
Soriente, Annunziata;
Hernández-Martínez, Miguel Ángel;
Marabotti, Anna

Publication type:

Article

Energetics of the protein-DNA-water interaction.

Published in:

BMC Structural Biology, 2007, v. 7, p. 4, doi. 10.1186/1472-6807-7-4

By:

Spyrakis, Francesca;
Cozzini, Pietro;
Bertoli, Chiara;
Marabotti, Anna;
Kellogg, Glen E.;
Mozzarelli, Andrea

Publication type:

Article

In Silico Analysis of the Effects of Omicron Spike Amino Acid Changes on the Interactions with Human Proteins.

Published in:

Molecules, 2022, v. 27, n. 15, p. 4827, doi. 10.3390/molecules27154827

By:

D'Arminio, Nancy;
Giordano, Deborah;
Scafuri, Bernardina;
Biancaniello, Carmen;
Petrillo, Mauro;
Facchiano, Angelo;
Marabotti, Anna

Publication type:

Article

Investigating the Effects of Amino Acid Variations in Human Menin.

Published in:

Molecules, 2022, v. 27, n. 5, p. 1, doi. 10.3390/molecules27051747

By:

Biancaniello, Carmen;
D’Argenio, Antonia;
Giordano, Deborah;
Dotolo, Serena;
Scafuri, Bernardina;
Marabotti, Anna;
d’Acierno, Antonio;
Tagliaferri, Roberto;
Facchiano, Angelo

Publication type:

Article

Simulation of the Interactions of Arginine with Wild-Type GALT Enzyme and the Classic Galactosemia-Related Mutant p.Q188R by a Computational Approach.

Published in:

Molecules, 2021, v. 26, n. 19, p. 6061, doi. 10.3390/molecules26196061

By:

Verdino, Anna;
D'Urso, Gaetano;
Tammone, Carmen;
Scafuri, Bernardina;
Catapano, Lucrezia;
Marabotti, Anna

Publication type:

Article

Analysis of the Structure-Function-Dynamics Relationships of GALT Enzyme and of Its Pathogenic Mutant p.Q188R: A Molecular Dynamics Simulation Study in Different Experimental Conditions.

Published in:

Molecules, 2021, v. 26, n. 19, p. 5941, doi. 10.3390/molecules26195941

By:

Verdino, Anna;
D'Urso, Gaetano;
Tammone, Carmen;
Scafuri, Bernardina;
Marabotti, Anna

Publication type:

Article

D936Y and Other Mutations in the Fusion Core of the SARS-CoV-2 Spike Protein Heptad Repeat 1: Frequency, Geographical Distribution, and Structural Effect.

Published in:

Molecules, 2021, v. 26, n. 9, p. 2622, doi. 10.3390/molecules26092622

By:

Oliva, Romina;
Shaikh, Abdul Rajjak;
Petta, Andrea;
Vangone, Anna;
Cavallo, Luigi;
Facchiano, Angelo;
Marabotti, Anna

Publication type:

Article

Assessment of haptoglobin alleles in autism spectrum disorders.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-64679-w

By:

Cupaioli, Francesca Anna;
Mosca, Ettore;
Magri, Chiara;
Gennarelli, Massimo;
Moscatelli, Marco;
Raggi, Maria Elisabetta;
Landini, Martina;
Galluccio, Nadia;
Villa, Laura;
Bonfanti, Arianna;
Renieri, Alessandra;
Fallerini, Chiara;
Minelli, Alessandra;
Marabotti, Anna;
Milanesi, Luciano;
Fasano, Alessio;
Mezzelani, Alessandra

Publication type:

Article

Study on the Association among Mycotoxins and other Variables in Children with Autism.

Published in:

Toxins, 2017, v. 9, n. 7, p. 203, doi. 10.3390/toxins9070203

By:

De Santis, Barbara;
Raggi, Maria Elisabetta;
Moretti, Giorgio;
Facchiano, Francesco;
Mezzelani, Alessandra;
Villa, Laura;
Bonfanti, Arianna;
Campioni, Alessandra;
Rossi, Stefania;
Camposeo, Serena;
Soricelli, Sabina;
Moracci, Gabriele;
Debegnach, Francesca;
Gregori, Emanuela;
Ciceri, Francesca;
Milanesi, Luciano;
Marabotti, Anna;
Brera, Carlo

Publication type:

Article

Performance of Web tools for predicting changes in protein stability caused by mutations.

Published in:

BMC Bioinformatics, 2021, v. 22, p. 1, doi. 10.1186/s12859-021-04238-w

By:

Marabotti, Anna;
Del Prete, Eugenio;
Scafuri, Bernardina;
Facchiano, Angelo

Publication type:

Article

The evolution of a Web resource: The Galactosemia Proteins Database 2.0.

Published in:

Human Mutation, 2018, v. 39, n. 1, p. 52, doi. 10.1002/humu.23346

By:

d'Acierno, Antonio;
Scafuri, Bernardina;
Facchiano, Angelo;
Marabotti, Anna

Publication type:

Article

GALT Protein Database: Querying Structural and Functional Features of GALT Enzyme.

Published in:

Human Mutation, 2014, v. 35, n. 9, p. 1060, doi. 10.1002/humu.22613

By:

d’Acierno, Antonio;
Facchiano, Angelo;
Marabotti, Anna

Publication type:

Article

Correlation assessment among clinical phenotypes, expression analysis and molecular modeling of 14 novel variations in the human galactose-1-phosphate uridylyltransferase gene.

Published in:

Human Mutation, 2012, v. 33, n. 7, p. 1107, doi. 10.1002/humu.22093

By:

Tang, Manshu;
Facchiano, Angelo;
Rachamadugu, Rakesh;
Calderon, Fernanda;
Mao, Rong;
Milanesi, Luciano;
Marabotti, Anna;
Lai, Kent

Publication type:

Article

Synthesis and biological evaluation of the progenitor of a new class of cephalosporin analogues, with a particular focus on structure-based computational analysis.

Published in:

PLoS ONE, 2017, v. 12, n. 7, p. 1, doi. 10.1371/journal.pone.0181563

By:

Verdino, Anna;
Vigliotta, Giovanni;
Giordano, Deborah;
Caputo, Ivana;
Soriente, Annunziata;
De Rosa, Margherita;
Marabotti, Anna

Publication type:

Article

Binding of Glucose to the d-Galactose/d-Glucose–Binding Protein from Escherichia coli Restores the Native Protein Secondary Structure and Thermostability That Are Lost upon Calcium Depletion.

Published in:

Journal of Biochemistry, 2006, v. 139, n. 2, p. 213, doi. 10.1093/jb/mvj027

By:

D'Auria, Sabato;
Ausili, Alessio;
Marabotti, Anna;
Varriale, Antonio;
Scognamiglio, Viviana;
Staiano, Maria;
Bertoli, Enrico;
Rossi, Mosè;
Tanfani, Fabio

Publication type:

Article

Efficient Fludarabine-Activating PNP From Archaea as a Guidance for Redesign the Active Site of E. Coli PNP.

Published in:

Journal of Cellular Biochemistry, 2016, v. 117, n. 5, p. 1126, doi. 10.1002/jcb.25396

By:

Cacciapuoti, Giovanna;
Bagarolo, Maria Libera;
Martino, Elisa;
Scafuri, Bernardina;
Marabotti, Anna;
Porcelli, Marina

Publication type:

Article

The misuse of terms in scientific literature.

Published in:

2010

By:

Marabotti, Anna;
Facchiano, Angelo

Publication type:

Letter

Searching for Chymase Inhibitors among Chamomile Compounds Using a Computational-Based Approach.

Published in:

Biomolecules (2218-273X), 2019, v. 9, n. 1, p. 5, doi. 10.3390/biom9010005

By:

Dubey, Amit;
Dotolo, Serena;
Ramteke, Pramod W.;
Facchiano, Angelo;
Marabotti, Anna

Publication type:

Article

Improvement of Mutant Galactose-1-Phosphate Uridylyltransferase (GALT) Activity by FDA-Approved Pharmacochaperones: A Preliminary Study.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 3, p. 888, doi. 10.3390/ijms26030888

By:

Scafuri, Bernardina;
Piscosquito, Stefania;
Giliberti, Giulia;
Facchiano, Angelo;
Miner, Jaden;
Balakrishnan, Bijina;
Lai, Kent;
Marabotti, Anna

Publication type:

Article

The Odd Couple(s): An Overview of Beta-Lactam Antibiotics Bearing More Than One Pharmacophoric Group.

Published in:

International Journal of Molecular Sciences, 2021, v. 22, n. 2, p. 617, doi. 10.3390/ijms22020617

By:

De Rosa, Margherita;
Verdino, Anna;
Soriente, Annunziata;
Marabotti, Anna

Publication type:

Article

Association Analysis of Noncoding Variants in Neuroligins 3 and 4X Genes with Autism Spectrum Disorder in an Italian Cohort.

Published in:

International Journal of Molecular Sciences, 2016, v. 17, n. 10, p. 1765, doi. 10.3390/ijms17101765

By:

Landini, Martina;
Merelli, Ivan;
Raggi, M. Elisabetta;
Galluccio, Nadia;
Ciceri, Francesca;
Bonfanti, Arianna;
Camposeo, Serena;
Massagli, Angelo;
Villa, Laura;
Salvi, Erika;
Cusi, Daniele;
Molteni, Massimo;
Milanesi, Luciano;
Marabotti, Anna;
Mezzelani, Alessandra

Publication type:

Article

Preface: BITS2014, the annual meeting of the Italian Society of Bioinformatics.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S9-S1

By:

Facchiano, Angelo;
Angelini, Claudia;
Bosotti, Roberta;
Guffanti, Alessandro;
Marabotti, Anna;
Marangoni, Roberto;
Pascarella, Stefano;
Romano, Paolo;
Zanzoni, Andreas;
Helmer-Citterich, Manuela

Publication type:

Article

A theoretical study on predicted protein targets of apple polyphenols and possible mechanisms of chemoprevention in colorectal cancer.

Published in:

Scientific Reports, 2016, p. 32516, doi. 10.1038/srep32516

By:

Scafuri, Bernardina;
Marabotti, Anna;
Carbone, Virginia;
Minasi, Paola;
Dotolo, Serena;
Facchiano, Angelo

Publication type:

Article

Celiac Anti-Type 2 Transglutaminase Antibodies Induce Phosphoproteome Modification in Intestinal Epithelial Caco-2 Cells.

Published in:

PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0084403

By:

Paolella, Gaetana;
Caputo, Ivana;
Marabotti, Anna;
Lepretti, Marilena;
Salzano, Anna Maria;
Scaloni, Andrea;
Vitale, Monica;
Zambrano, Nicola;
Sblattero, Daniele;
Esposito, Carla

Publication type:

Article

Correlation Spectroscopy and Molecular Dynamics Simulations to Study the Structural Features of Proteins.

Published in:

PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0064840

By:

Varriale, Antonio;
Marabotti, Anna;
Mei, Giampiero;
Staiano, Maria;
D’Auria, Sabato

Publication type:

Article

Under Pressure That Splits a Family in Two. The Case of Lipocalin Family.

Published in:

PLoS ONE, 2012, v. 7, n. 11, p. 1, doi. 10.1371/journal.pone.0050489

By:

Marchal, Stephane;
Marabotti, Anna;
Staiano, Maria;
Varriale, Antonio;
Domaschke, Thomas;
Lange, Reinhard;
D'Auria, Sabato

Publication type:

Article

Energy-based prediction of amino acid-nucleotide base recognition.

Published in:

Journal of Computational Chemistry, 2008, v. 29, n. 12, p. 1955, doi. 10.1002/jcc.20954

By:

Marabotti, Anna;
Spyrakis, Francesca;
Facchiano, Angelo;
Cozzini, Pietro;
Alberti, Saverio;
Kellogg, Glen E.;
Mozzarelli, Andrea

Publication type:

Article

New computational strategy to analyze the interactions of ERα and ERβ with different ERE sequences.

Published in:

Journal of Computational Chemistry, 2007, v. 28, n. 6, p. 1031, doi. 10.1002/jcc.20582

By:

Marabotti, Anna;
Colonna, Giovanni;
Facchiano, Angelo

Publication type:

Article

Molecular strategies for protein stabilization: The case of a trehalose/maltose-binding protein from Thermus thermophilus.

Published in:

Proteins, 2008, v. 73, n. 4, p. 839, doi. 10.1002/prot.22114

By:

Scirè, Andrea;
Marabotti, Anna;
Aurilia, Vincenzo;
Staiano, Maria;
Ringhieri, Paola;
Iozzino, Luisa;
Crescenzo, Roberta;
Tanfani, Fabio;
D'Auria, Sabato

Publication type:

Article

Mutant bovine odorant-binding protein: Temperature affects the protein stability and dynamics as revealed by infrared spectroscopy and molecular dynamics simulations.

Published in:

Proteins, 2008, v. 72, n. 2, p. 769, doi. 10.1002/prot.21966

By:

Marabotti, Anna;
Lefèvre, Thierry;
Staiano, Maria;
Crescenzo, Roberta;
Varriale, Antonio;
Rossi, Mosè;
Pézolet, Michel;
D'Auria, Sabato

Publication type:

Article

The differences in the microenvironment of the two tryptophan residues of the glutamine-binding protein from Escherichia coli shed light on the binding properties and the structural dynamics of the protein.

Published in:

Proteins, 2008, v. 71, n. 2, p. 743, doi. 10.1002/prot.21748

By:

D'Auria, Sabato;
Staiano, Maria;
Varriale, Antonio;
Gonnelli, Margherita;
Marabotti, Anna;
Rossi, Mose';
Strambini, Giovanni B.

Publication type:

Article

Hydrophobic interactions and ionic networks play an important role in thermal stability and denaturation mechanism of the porcine odorant-binding protein.

Published in:

Proteins, 2008, v. 71, n. 1, p. 35, doi. 10.1002/prot.21658

By:

Stepanenko, Olesya V.;
Marabotti, Anna;
Kuznetsova, Irina M.;
Turoverov, Konstantin K.;
Fini, Carlo;
Varriale, Antonio;
Staiano, Maria;
Rossi, Mose';
D'Auria, Sabato

Publication type:

Article

Molecular adaptation strategies to high temperature and thermal denaturation mechanism of the D-trehalose/ D-maltose-binding protein from the hyperthermophilic archaeon Thermococcus litoralis.

Published in:

Proteins, 2007, v. 67, n. 4, p. 1002, doi. 10.1002/prot.21383

By:

Fessas, Dimitrios;
Staiano, Maria;
Barbiroli, Alberto;
Marabotti, Anna;
Schiraldi, Alberto;
Varriale, Antonio;
Rossi, Mose';
D'Auria, Sabato

Publication type:

Article

D-Trehalose/ D-maltose-binding protein from the hyperthermophilic archaeon Thermococcus litoralis: The binding of trehalose and maltose results in different protein conformational states.

Published in:

Proteins, 2006, v. 63, n. 4, p. 754, doi. 10.1002/prot.20952

By:

Herman, Petr;
Staiano, Maria;
Marabotti, Anna;
Varriale, Antonio;
Scirè, Andrea;
Tanfani, Fabio;
Vecer, Jaroslav;
Rossi, Mose';
D'Auria, Sabato

Publication type:

Article

Pressure effect on the stability and the conformational dynamics of the D-Galactose/D-Glucose-binding protein from Escherichia coli.

Published in:

Proteins, 2006, v. 62, n. 1, p. 193, doi. 10.1002/prot.20753

By:

Marabotti, Anna;
Herman, Petr;
Staiano, Maria;
Varriale, Antonio;
de Champdoré, Marcella;
Rossi, Mosè;
Gryczynski, Zygmunt;
D'Auria, Sabato

Publication type:

Article

Binding of glutamine to glutamine-binding protein from Escherichia coli induces changes in protein structure and increases protein stability.

Published in:

Proteins, 2005, v. 58, n. 1, p. 80, doi. 10.1002/prot.20289

By:

D'Auria, Sabato;
Scirè, Andrea;
Varriale, Antonio;
Scognamiglio, Viviana;
Staiano, Maria;
Ausili, Alessio;
Marabotti, Anna;
Rossi, Mosè;
Tanfani, Fabio

Publication type:

Article

Pyrimidine-specific ribonucleoside hydrolase from the archaeon Sulfolobus solfataricus– biochemical characterization and homology modeling.

Published in:

FEBS Journal, 2008, v. 275, n. 8, p. 1900, doi. 10.1111/j.1742-4658.2008.06348.x

By:

Porcelli, Marina;
Concilio, Luigi;
Peluso, Iolanda;
Marabotti, Anna;
Facchiano, Angelo;
Cacciapuoti, Giovanna

Publication type:

Article

Author Correction: Assessment of haptoglobin alleles in autism spectrum disorders.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-33293-x

By:

Cupaioli, Francesca Anna;
Mosca, Ettore;
Magri, Chiara;
Gennarelli, Massimo;
Moscatelli, Marco;
Raggi, Maria Elisabetta;
Landini, Martina;
Galluccio, Nadia;
Villa, Laura;
Bonfanti, Arianna;
Renieri, Alessandra;
Fallerini, Chiara;
Minelli, Alessandra;
Marabotti, Anna;
Milanesi, Luciano;
Fasano, Alessio;
Mezzelani, Alessandra

Publication type:

Article

Editorial: Computational Proteomics and Integration of Data Resources for Advanced Studies in Life Sciences.

Published in:

2021

By:

Marabotti, Anna;
Romano, Paolo;
Facchiano, Angelo

Publication type:

Editorial

An overview of bioinformatics courses delivered at the academic level in Italy: Reflections and recommendations from BITS.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010846

By:

Marangoni, Roberto;
Bevilacqua, Vitoantonio;
Cannataro, Mario;
Mele, Bruno Hay;
Mauri, Giancarlo;
Marabotti, Anna

Publication type:

Article

Computational methods to assist in the discovery of pharmacological chaperones for rare diseases.

Published in:

Briefings in Bioinformatics, 2022, v. 23, n. 5, p. 1, doi. 10.1093/bib/bbac198

By:

Scafuri, Bernardina;
Verdino, Anna;
D'Arminio, Nancy;
Marabotti, Anna

Publication type:

Article

multiple network-based bioinformatics pipeline for the study of molecular mechanisms in oncological diseases for personalized medicine.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab180

By:

Dotolo, Serena;
Marabotti, Anna;
Rachiglio, Anna Maria;
Abate, Riziero Esposito;
Benedetto, Marco;
Ciardiello, Fortunato;
Luca, Antonella De;
Normanno, Nicola;
Facchiano, Angelo;
Tagliaferri, Roberto

Publication type:

Article

Predicting the stability of mutant proteins by computational approaches: an overview.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa074

By:

Marabotti, Anna;
Scafuri, Bernardina;
Facchiano, Angelo

Publication type:

Article

A review on drug repurposing applicable to COVID-19.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 726, doi. 10.1093/bib/bbaa288

By:

Dotolo, Serena;
Marabotti, Anna;
Facchiano, Angelo;
Tagliaferri, Roberto

Publication type:

Article

Bioinformatics Study on Site-Specific Variations of Eotaxin-3, a Key Chemokine in Eosinophilic Esophagitis (EoE).

Published in:

Genes, 2024, v. 15, n. 8, p. 1073, doi. 10.3390/genes15081073

By:

Giordano, Deborah;
d'Acierno, Antonio;
Marabotti, Anna;
Iovino, Paola;
Iacomino, Giuseppe;
Facchiano, Angelo

Publication type:

Article