Works matching AU Manyuan Long

Results: 77

Adaptive Evolution and the Birth of CTCF Binding Sites in the <i>Drosophila</i> Genome

Published in:

PLoS Biology, 2012, v. 10, n. 11, p. 1, doi. 10.1371/journal.pbio.1001420

By:

Ni, Xiaochun;
Zhang, Yong E.;
Nègre, Nicolas;
Chen, Sidi;
Long, Manyuan;
White, Kevin P.

Publication type:

Article

Accelerated Recruitment of New Brain Development Genes into the Human Genome.

Published in:

PLoS Biology, 2011, v. 9, n. 10, p. 1, doi. 10.1371/journal.pbio.1001179

By:

Zhang, Yong E.;
Landback, Patrick;
Vibranovski, Maria D.;
Long, Manyuan

Publication type:

Article

Chromosomal Redistribution of Male-Biased Genes in Mammalian Evolution with Two Bursts of Gene Gain on the X Chromosome.

Published in:

PLoS Biology, 2010, v. 8, n. 10, p. 1, doi. 10.1371/journal.pbio.1000494

By:

Zhang, Yong E.;
Vibranovski, Maria D.;
Landback, Patrick;
Marais, Gabriel A. B.;
Long, Manyuan

Publication type:

Article

Excess of Amino Acid Substitutions Relative to Polymorphism Between X-Linked Duplications in Drosophila melanogaster.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 2, p. 273

By:

Thornton, Kevin;
Long, Manyuan

Publication type:

Article

Rapid Divergence of Gene Duplicates on the Drosophila melanogaster X Chromosome.

Published in:

Molecular Biology & Evolution, 2002, v. 19, n. 6, p. 918, doi. 10.1093/oxfordjournals.molbev.a004149

By:

Thornton, Kevin;
Long, Manyuan

Publication type:

Article

Evolution of the Phosphoglycerate mutase Processed Gene in Human and Chimpanzee Revealing the Origin of a New Primate Gene.

Published in:

Molecular Biology & Evolution, 2002, v. 19, n. 5, p. 654, doi. 10.1093/oxfordjournals.molbev.a004124

By:

Betrán, Esther;
Wang, Wen;
Jin, Li;
Long, Manyuan

Publication type:

Article

Testing the “Proto-splice Sites” Model of Intron Origin: Evidence from Analysis of Intron Phase Correlations.

Published in:

Molecular Biology & Evolution, 2000, v. 17, n. 12, p. 1789, doi. 10.1093/oxfordjournals.molbev.a026279

By:

Long, Manyuan;
Rosenberg, Carl

Publication type:

Article

The Origin of the Jingwei Gene and the Complex Modular Structure of Its Parental Gene, Yellow Emperor, in Drosophila melanogaster.

Published in:

Molecular Biology & Evolution, 2000, v. 17, n. 9, p. 1294, doi. 10.1093/oxfordjournals.molbev.a026413

By:

Wang, Wen;
Zhang, Jianming;
Alvarez, Carlos;
Llopart, Ana;
Long, Manyuan

Publication type:

Article

The concept of the sexual reproduction cycle and its evolutionary significance.

Published in:

Frontiers in Plant Science, 2015, v. 5, p. 1, doi. 10.3389/fpls.2015.00011

By:

Shu-Nong Bai;
Chong, Kang;
Dornelas, Marcelo Carnier;
Manyuan Long

Publication type:

Article

Whole genome-wide chromosome fusion and new gene birth in the Monopterus albus genome.

Published in:

Cell & Bioscience, 2020, v. 10, n. 1, p. 1, doi. 10.1186/s13578-020-00432-0

By:

Cheng, Yibin;
Shang, Dantong;
Luo, Majing;
Huang, Chunhua;
Lai, Fengling;
Wang, Xin;
Xu, Xu;
Ying, Ruhong;
Wang, Lingling;
Zhao, Yu;
Zhang, Li;
Long, Manyuan;
Cheng, Hanhua;
Zhou, Rongjia

Publication type:

Article

Retrogenes Moved Out of the Z Chromosome in the Silkworm.

Published in:

Journal of Molecular Evolution, 2012, v. 74, n. 3/4, p. 113, doi. 10.1007/s00239-012-9499-y

By:

Wang, Jun;
Long, Manyuan;
Vibranovski, Maria

Publication type:

Article

Evolution of Enzymatic Activities of Testis-Specific Short-Chain Dehydrogenase/Reductase in Drosophila.

Published in:

Journal of Molecular Evolution, 2010, v. 71, n. 4, p. 241, doi. 10.1007/s00239-010-9384-5

By:

Zhang, Jianming;
Yang, Huyuan;
Long, Manyuan;
Li, Liming;
Dean, Antony

Publication type:

Article

A New Retroposed Gene in Drosophila Heterochromatin Detected by Microarray-Based Comparative Genomic Hybridization.

Published in:

Journal of Molecular Evolution, 2007, v. 64, n. 2, p. 272, doi. 10.1007/s00239-006-0169-9

By:

Chuanzhu Fan;
Long, Manyuan

Publication type:

Article

Relationships Among Stop Codon Usage Bias, Its Context, Isochores, and Gene Expression Level in Various Eukaryotes.

Published in:

Journal of Molecular Evolution, 2005, v. 61, n. 4, p. 437, doi. 10.1007/s00239-004-0277-3

By:

Jingchun Sun;
Ming Chen;
Jinlin Xu;
Jianhua Luo;
Manyuan Long

Publication type:

Article

Journal club.

Published in:

Nature, 2007, v. 449, n. 7162, p. 511, doi. 10.1038/449511a

By:

Long, Manyuan

Publication type:

Article

Detection of intergenic non-coding RNAs expressed in the main developmental stages in Drosophila melanogaster.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 13, p. 4308, doi. 10.1093/nar/gkp334

By:

Li, Zheng;
Liu, Min;
Zhang, Li;
Zhang, Wenxia;
Gao, Ge;
Zhu, Zuoyan;
Wei, Liping;
Fan, Qichang;
Long, Manyuan

Publication type:

Article

Duplication-degeneration as a mechanism of gene fission and the origin of new genes in Drosophila species.

Published in:

Nature Genetics, 2004, v. 36, n. 5, p. 523, doi. 10.1038/ng1338

By:

Wang, Wen;
Yu, Haijing;
Long, Manyuan

Publication type:

Article

Drosophila Duplication Hotspots Are Associated with Late-Replicating Regions of the Genome.

Published in:

PLoS Genetics, 2011, v. 7, n. 11, p. 1, doi. 10.1371/journal.pgen.1002340

By:

Cardoso-Moreira, Margarida;
Emerson, J. J.;
Clark, Andrew G.;
Manyuan Long

Publication type:

Article

Stage-Specific Expression Profiling of Drosophila Spermatogenesis Suggests that Meiotic Sex Chromosome Inactivation Drives Genomic Relocation of Testis-Expressed Genes.

Published in:

PLoS Genetics, 2009, v. 5, n. 11, p. 1, doi. 10.1371/journal.pgen.1000731

By:

Vibranovski, Maria D.;
Lopes, Hedibert F.;
Karr, Timothy L.;
Manyuan Long

Publication type:

Article

Repetitive Element-Mediated Recombination as a Mechanism for New Gene Origination in Drosophila.

Published in:

PLoS Genetics, 2008, v. 4, n. 1, p. e3, doi. 10.1371/journal.pgen.0040003

By:

Shuang Yang;
Arguello, J. Roman;
Xin Li;
Yun Ding;
Qi Zhou;
Ying Chen;
Yue Zhang;
Ruoping Zhao;
Brunet, Frédéric;
Lixin Peng;
Manyuan Long;
Wen Wang

Publication type:

Article

Origination of an X-Linked Testes Chimeric Gene by Illegitimate Recombination in Drosophila.

Published in:

PLoS Genetics, 2006, v. 2, n. 5, p. e77, doi. 10.1371/journal.pgen.0020077

By:

Arguello, J. Roman;
Ying Chen;
Shuang Yang;
Wen Wang;
Manyuan Long

Publication type:

Article

IE-Kb: intron exon knowledge base.

Published in:

Bioinformatics, 2000, v. 16, n. 12, p. 1151, doi. 10.1093/bioinformatics/16.12.1151

By:

Sakharkar, Meena K.;
Kangueane, Pandjassarame;
Woon, Tong W.;
Tan, Tin W.;
Kolatkar, Prasanna R.;
Long, Manyuan;
de Souza, Sandro J

Publication type:

Article

Dissection of patulin biosynthesis, spatial control and regulation mechanism in Penicillium expansum.

Published in:

Environmental Microbiology, 2019, v. 21, n. 3, p. 1124, doi. 10.1111/1462-2920.14542

By:

Li, Boqiang;
Chen, Yong;
Zong, Yuanyuan;
Shang, Yanjiao;
Zhang, Zhanquan;
Xu, Xiaodi;
Wang, Xiao;
Long, Manyuan;
Tian, Shiping

Publication type:

Article

Evolutionary New Genes in a Growing Paradigm.

Published in:

Genes, 2022, v. 13, n. 9, p. 1605, doi. 10.3390/genes13091605

By:

Betrán, Esther;
Long, Manyuan

Publication type:

Article

Retrogene Duplication and Expression Patterns Shaped by the Evolution of Sex Chromosomes in Malaria Mosquitoes.

Published in:

Genes, 2022, v. 13, n. 6, p. 968, doi. 10.3390/genes13060968

By:

Miller, Duncan;
Chen, Jianhai;
Liang, Jiangtao;
Betrán, Esther;
Long, Manyuan;
Sharakhov, Igor V.

Publication type:

Article

Rapid Cis–Trans Coevolution Driven by a Novel Gene Retroposed from a Eukaryotic Conserved CCR4–NOT Component in Drosophila.

Published in:

Genes, 2022, v. 13, n. 1, p. 57, doi. 10.3390/genes13010057

By:

Krinsky, Benjamin H.;
Arthur, Robert K.;
Xia, Shengqian;
Sosa, Dylan;
Arsala, Deanna;
White, Kevin P.;
Long, Manyuan

Publication type:

Article

The Rapid Evolution of De Novo Proteins in Structure and Complex.

Published in:

Genome Biology & Evolution, 2024, v. 16, n. 6, p. 1, doi. 10.1093/gbe/evae107

By:

Chen, Jianhai;
Li, Qingrong;
Xia, Shengqian;
Arsala, Deanna;
Sosa, Dylan;
Wang, Dong;
Long, Manyuan

Publication type:

Article

High-Quality Genome Assemblies Reveal Evolutionary Dynamics of Repetitive DNA and Structural Rearrangements in the Drosophila virilis Subgroup.

Published in:

Genome Biology & Evolution, 2024, v. 16, n. 1, p. 1, doi. 10.1093/gbe/evad238

By:

Flynn, Jullien M;
Ahmed-Braimah, Yasir H;
Long, Manyuan;
Wing, Rod A;
Clark, Andrew G

Publication type:

Article

Human Gene Age Dating Reveals an Early and Rapid Evolutionary Construction of the Adaptive Immune System.

Published in:

Genome Biology & Evolution, 2023, v. 15, n. 5, p. 1, doi. 10.1093/gbe/evad081

By:

Zhang, Li;
Park, Jonathan J;
Dong, Matthew B;
Arsala, Deanna;
Xia, Shengqian;
Chen, Jianhai;
Sosa, Dylan;
Atlas, Jared E;
Long, Manyuan;
Chen, Sidi

Publication type:

Article

Genetic Architecture of Natural Variation Underlying Adult Foraging Behavior That Is Essential for Survival of Drosophila melanogaster.

Published in:

Genome Biology & Evolution, 2017, v. 9, n. 5, p. 1357, doi. 10.1093/gbe/evx089

By:

Lee, Yuh Chwen G.;
Qian Yang;
Wanhao Chi;
Turkson, Susie A.;
Du, Wei A.;
Kemkemer, Claus;
Zhao-Bang Zeng;
Manyuan Long;
Xiaoxi Zhuang

Publication type:

Article

Expressed Structurally Stable Inverted Duplicates in Mammalian Genomes as Functional Noncoding Elements.

Published in:

Genome Biology & Evolution, 2017, v. 9, n. 4, p. 981, doi. 10.1093/gbe/evx054

By:

Zhen-Xia Chen;
Oliver, Brian;
Zhang, Yong E.;
Ge Gao;
Manyuan Long

Publication type:

Article

High Occurrence of Functional New Chimeric Genes in Survey of Rice Chromosome 3 Short Arm Genome Sequences.

Published in:

Genome Biology & Evolution, 2013, v. 5, n. 5, p. 1038, doi. 10.1093/gbe/evt071

By:

Zhang, Chengjun;
Wang, Jun;
Marowsky, Nicholas C.;
Long, Manyuan;
Wing, Rod A.;
Fan, Chuanzhu

Publication type:

Article

Adaptive Evolution of Genes and Genomes (Book Review).

Published in:

2001

By:

Manyuan Long

Publication type:

Book Review

New genes as drivers of phenotypic evolution.

Published in:

Nature Reviews Genetics, 2013, v. 14, n. 10, p. 744, doi. 10.1038/nrg3584

By:

Chen, Sidi;
Krinsky, Benjamin H.;
Long, Manyuan

Publication type:

Article

New genes as drivers of phenotypic evolution.

Published in:

Nature Reviews Genetics, 2013, v. 14, n. 9, p. 645, doi. 10.1038/nrg3521

By:

Chen, Sidi;
Krinsky, Benjamin H.;
Long, Manyuan

Publication type:

Article

Species-specific partial gene duplication in Arabidopsis thaliana evolved novel phenotypic effects on morphological traits under strong positive selection.

Published in:

Plant Cell, 2022, v. 34, n. 2, p. 802, doi. 10.1093/plcell/koab291

By:

Huang, Yuan;
Chen, Jiahui;
Dong, Chuan;
Sosa, Dylan;
Xia, Shengqian;
Ouyang, Yidan;
Fan, Chuanzhu;
Li, Dezhu;
Mortola, Emily;
Long, Manyuan;
Bergelson, Joy

Publication type:

Article

Segmental dataset and whole body expression data do not support the hypothesis that non-random movement is an intrinsic property of Drosophila retrogenes.

Published in:

BMC Evolutionary Biology, 2012, v. 12, n. 1, p. 169, doi. 10.1186/1471-2148-12-169

By:

Vibranovski, Maria D;
Zhang, Yong E.;
Kemkemer, Claus;
VanKuren, Nicholas W.;
Lopes, Hedibert F.;
Karr, Timothy L.;
Long, Manyuan

Publication type:

Article

Subcellular Enrichment Patterns of New Genes in Drosophila Evolution.

Published in:

Molecular Biology & Evolution, 2025, v. 42, n. 2, p. 1, doi. 10.1093/molbev/msaf038

By:

Dong, Chuan;
Xia, Shengqian;
Zhang, Li;
Arsala, Deanna;
Fang, Chengchi;
Tan, Shengjun;
Clark, Andrew G;
Long, Manyuan

Publication type:

Article

Rapid Gene Evolution in an Ancient Post-transcriptional and Translational Regulatory System Compensates for Meiotic X Chromosomal Inactivation.

Published in:

Molecular Biology & Evolution, 2022, v. 39, n. 1, p. 1, doi. 10.1093/molbev/msab296

By:

Xia, Shengqian;
Ventura, Iuri M;
Blaha, Andreas;
Sgromo, Annamaria;
Han, Shuaibo;
Izaurralde, Elisa;
Long, Manyuan

Publication type:

Article

New Genes Interacted With Recent Whole-Genome Duplicates in the Fast Stem Growth of Bamboos.

Published in:

Molecular Biology & Evolution, 2021, v. 38, n. 12, p. 5752, doi. 10.1093/molbev/msab288

By:

Jin, Guihua;
Ma, Peng-Fei;
Wu, Xiaopei;
Gu, Lianfeng;
Long, Manyuan;
Zhang, Chengjun;
Li, De-Zhu

Publication type:

Article

Rapid Evolution of Gained Essential Developmental Functions of a Young Gene via Interactions with Other Essential Genes.

Published in:

Molecular Biology & Evolution, 2019, v. 36, n. 10, p. 2212, doi. 10.1093/molbev/msz137

By:

Lee, Yuh Chwen G;
Ventura, Iuri M;
Rice, Gavin R;
Chen, Dong-Yuan;
Colmenares, Serafin U;
Long, Manyuan

Publication type:

Article

Society for Molecular Biology and Evolution, Council and Business Meetings, 2012, Dublin, Ireland.

Published in:

Molecular Biology & Evolution, 2013, v. 30, n. 1, p. 234, doi. 10.1093/molbev/mss244

By:

Long, Manyuan

Publication type:

Article

Deficiency of X-Linked Inverted Duplicates with Male-Biased Expression and the Underlying Evolutionary Mechanisms in the Drosophila Genome.

Published in:

Molecular Biology & Evolution, 2011, v. 28, n. 10, p. 2823, doi. 10.1093/molbev/msr101

By:

Chen, Zhen-Xia;
Zhang, Yong E.;
Vibranovski, Maria;
Luo, Jingchu;
Gao, Ge;
Long, Manyuan

Publication type:

Article

Recombination Yet Inefficient Selection along the Drosophila melanogaster Subgroup's Fourth Chromosome.

Published in:

Molecular Biology & Evolution, 2010, v. 27, n. 4, p. 848, doi. 10.1093/molbev/msp291

By:

Arguello, J. Roman;
Zhang, Yue;
Kado, Tomoyuki;
Fan, Chuanzhu;
Zhao, Ruoping;
Innan, Hideki;
Wang, Wen;
Long, Manyuan

Publication type:

Article

Recurrent Tandem Gene Duplication Gave Rise to Functionally Divergent Genes in Drosophila.

Published in:

Molecular Biology & Evolution, 2008, v. 25, n. 7, p. 1451, doi. 10.1093/molbev/msn089

By:

Chuanzhu Fan;
Ying Chen;
Manyuan Long

Publication type:

Article

Origins of New Male Germ-line Functions from X-Derived Autosomal Retrogenes in the Mouse.

Published in:

Molecular Biology & Evolution, 2007, v. 24, n. 10, p. 2242, doi. 10.1093/molbev/msm153

By:

Shiao, Meng-Shin;
Khil, Pavel;
Camerini-Otero, R. Daniel;
Shiroishi, Toshihiko;
Moriwaki, Kazuo;
Yu, Hon-Tsen;
Long, Manyuan

Publication type:

Article

gKaKs: the pipeline for genome-level Ka/Ks calculation.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 645, doi. 10.1093/bioinformatics/btt009

By:

Zhang, Chengjun;
Wang, Jun;
Long, Manyuan;
Fan, Chuanzhu

Publication type:

Article

A cautionary note for retrocopy identification: DNA-based duplication of intron-containing genes significantly contributes to the origination of single exon genes.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. 1749, doi. 10.1093/bioinformatics/btr280

By:

Zhang, Yong E.;
Vibranovski, Maria D.;
Krinsky, Benjamin H.;
Long, Manyuan

Publication type:

Article

RNA-based gene duplication: mechanistic and evolutionary insights.

Published in:

2009

By:

Kaessmann, Henrik;
Vinckenbosch, Nicolas;
Long, Manyuan

Publication type:

journal article

The origin of new genes: glimpses from the young and old.

Published in:

Nature Reviews Genetics, 2003, v. 4, n. 11, p. 865, doi. 10.1038/nrg1204

By:

Long, Manyuan;
Betrán, Esther;
Thornton, Kevin;
Wen Wang

Publication type:

Article