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Single-cell genomics of co-sorted Nanoarchaeota suggests novel putative host associations and diversification of proteins involved in symbiosis.
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- Microbiome, 2018, v. 6, n. 1, p. N.PAG, doi. 10.1186/s40168-018-0539-8
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Abundant Atribacteria in deep marine sediment from the Adélie Basin, Antarctica.
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- Frontiers in Microbiology, 2015, p. 1, doi. 10.3389/fmicb.2015.00872
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Ecogenomics of virophages and their giant virus hosts assessed through time series metagenomics.
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- Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-01086-2
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- Article
Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs.
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- Nature Communications, 2016, v. 7, n. 1, p. 10476, doi. 10.1038/ncomms10476
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Genome-wide identification of bacterial plant colonization genes.
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- PLoS Biology, 2017, v. 15, n. 9, p. 1, doi. 10.1371/journal.pbio.2002860
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Dimethylsulfoniopropionate (DMSP) assimilation by Synechococcus in the Gulf of Mexico and northwest Atlantic Ocean.
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- Limnology & Oceanography, 2005, v. 50, n. 6, p. 1924, doi. 10.4319/lo.2005.50.6.1924
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Biogeography of major bacterial groups in the Delaware Estuary.
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- Limnology & Oceanography, 2005, v. 50, n. 5, p. 1697, doi. 10.4319/lo.2005.50.5.1697
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- Article
Identification and enumeration of bacteria assimilating dimethylsulfoniopropionate (DMSP) in the North Atlantic and Gulf of Mexico.
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- Limnology & Oceanography, 2004, v. 49, n. 2, p. 597, doi. 10.4319/lo.2004.49.2.0597
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- Article
Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 12, p. 2503, doi. 10.1038/ismej.2014.135
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- Article
Ecology of uncultured Prochlorococcus clades revealed through single-cell genomics and biogeographic analysis.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 1, p. 184, doi. 10.1038/ismej.2012.89
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- Article
Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2010, v. 4, n. 10, p. 1252, doi. 10.1038/ismej.2010.60
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- Article
Hidden diversity of soil giant viruses.
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- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07335-2
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- Article
Obtaining genomes from uncultivated environmental microorganisms using FACS–based single-cell genomics.
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- Nature Protocols, 2014, v. 9, n. 5, p. 1038, doi. 10.1038/nprot.2014.067
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- Article
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.
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- Nature Biotechnology, 2017, v. 35, n. 8, p. 725, doi. 10.1038/nbt.3893
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- Article
Metapangenomics reveals depth-dependent shifts in metabolic potential for the ubiquitous marine bacterial SAR324 lineage.
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- Microbiome, 2021, v. 9, n. 1, p. 1, doi. 10.1186/s40168-021-01119-5
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- Article
A pipeline for targeted metagenomics of environmental bacteria.
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- Microbiome, 2020, v. 8, n. 1, p. 1, doi. 10.1186/s40168-020-0790-7
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- Article
Ecological and genomic analyses of candidate phylum WPS‐2 bacteria in an unvegetated soil.
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- Environmental Microbiology, 2020, v. 22, n. 8, p. 3143, doi. 10.1111/1462-2920.15054
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- Article
Large-scale maps of variable infection efficiencies in aquatic Bacteroidetes phage-host model systems.
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- Environmental Microbiology, 2016, v. 18, n. 11, p. 3949, doi. 10.1111/1462-2920.13392
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- Article
Decontamination of MDA Reagents for Single Cell Whole Genome Amplification.
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- PLoS ONE, 2011, v. 6, n. 10, p. 1, doi. 10.1371/journal.pone.0026161
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Unlocking Short Read Sequencing for Metagenomics.
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- PLoS ONE, 2010, v. 5, n. 7, p. 1
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Whole Genome Amplification and De novo Assembly of Single Bacterial Cells.
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- PLoS ONE, 2009, v. 4, n. 9, p. 1, doi. 10.1371/journal.pone.0006864
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Subsurface hydrocarbon degradation strategies in low- and high-sulfate coal seam communities identified with activity-based metagenomics.
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- NPJ Biofilms & Microbiomes, 2022, v. 8, n. 1, p. 1, doi. 10.1038/s41522-022-00267-2
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Optimizing de novo genome assembly from PCR-amplified metagenomes.
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- PeerJ, 2019, p. 1, doi. 10.7717/peerj.6902
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Freshwater carbon and nutrient cycles revealed through reconstructed population genomes.
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- PeerJ, 2018, p. 1, doi. 10.7717/peerj.6075
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Multicellular magnetotactic bacteria are genetically heterogeneous consortia with metabolically differentiated cells.
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- PLoS Biology, 2024, v. 22, n. 7, p. 1, doi. 10.1371/journal.pbio.3002638
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Physiological potential and evolutionary trajectories of syntrophic sulfate-reducing bacterial partners of anaerobic methanotrophic archaea.
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- PLoS Biology, 2023, v. 21, n. 9, p. 1, doi. 10.1371/journal.pbio.3002292
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A compendium of bacterial and archaeal single-cell amplified genomes from oxygen deficient marine waters.
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- Scientific Data, 2023, v. 10, n. 1, p. 1, doi. 10.1038/s41597-023-02222-y
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Comparative genomics reveals electron transfer and syntrophic mechanisms differentiating methanotrophic and methanogenic archaea.
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- PLoS Biology, 2022, v. 20, n. 1, p. 1, doi. 10.1371/journal.pbio.3001508
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Probing the active fraction of soil microbiomes using BONCAT-FACS.
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- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-10542-0
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- Article
BONCAT-FACS-Seq reveals the active fraction of a biocrust community undergoing a wet-up event.
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- Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1176751
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Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.
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- Nature Biotechnology, 2018, v. 36, n. 7, p. 660, doi. 10.1038/nbt0718-660a
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- Article
Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.
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- Nature Biotechnology, 2018, v. 36, n. 2, p. 196, doi. 10.1038/nbt0218-196a
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- Article
The Epigenomic Landscape of Prokaryotes.
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- PLoS Genetics, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pgen.1005854
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HT-SIP: a semi-automated stable isotope probing pipeline identifies cross-kingdom interactions in the hyphosphere of arbuscular mycorrhizal fungi.
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- Microbiome, 2022, v. 10, n. 1, p. 1, doi. 10.1186/s40168-022-01391-z
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- Article
Genome-wide fitness profiling reveals molecular mechanisms that bacteria use to interact with Trichoderma atroviride exometabolites.
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- PLoS Genetics, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pgen.1010909
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- Article