Works by Mallal, Simon

Results: 78
    1

    Identification of immunogenic and cross-reactive chikungunya virus epitopes for CD4<sup>+</sup> T cells in chronic chikungunya disease.

    Published in:
    Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-60862-7
    By:
    • Agarwal, Rimjhim;
    • Ha, Calvin;
    • Côrtes, Fernanda H.;
    • Lee, Yeji;
    • Martínez-Pérez, Amparo;
    • Gálvez, Rosa Isela;
    • Castillo, Izabella N.;
    • Phillips, Elizabeth J.;
    • Mallal, Simon A.;
    • Balmaseda, Angel;
    • Harris, Eva;
    • Romero-Vivas, Claudia M.;
    • Premkumar, Lakshmanane;
    • Falconar, Andrew K.;
    • Grifoni, Alba;
    • Sette, Alessandro;
    • Weiskopf, Daniela
    Publication type:
    Article
    2

    Control of human immunodeficiency virus replication by cytotoxic T lymphocytes targeting subdominant epitopes.

    Published in:
    Nature Immunology, 2006, v. 7, n. 2, p. 173, doi. 10.1038/ni1281
    By:
    • Frahm, Nicole;
    • Kiepiela, Photini;
    • Adams, Sharon;
    • Linde, Caitlyn H;
    • Hewitt, Hannah S;
    • Sango, Kaori;
    • Feeney, Margaret E;
    • Addo, Marylyn M;
    • Lichterfeld, Mathias;
    • Lahaie, Matthew P;
    • Pae, Eunice;
    • Wurcel, Alysse G;
    • Roach, Timothy;
    • St John, M Anne;
    • Altfeld, Marcus;
    • Marincola, Francesco M;
    • Moore, Corey;
    • Mallal, Simon;
    • Carrington, Mary;
    • Heckerman, David
    Publication type:
    Article
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    CD4<sup>+</sup> T cells expressing CX3CR1, GPR56, with variable CD57 are associated with cardiometabolic diseases in persons with HIV.

    Published in:
    Frontiers in Immunology, 2023, v. 14, p. 1, doi. 10.3389/fimmu.2023.1099356
    By:
    • Wanjalla, Celestine N.;
    • Gabriel, Curtis L.;
    • Fuseini, Hubaida;
    • Bailin, Samuel S.;
    • Mashayekhi, Mona;
    • Simmons, Joshua;
    • Warren, Christopher M.;
    • Glass, David R.;
    • Oakes, Jared;
    • Gangula, Rama;
    • Wilfong, Erin;
    • Priest, Stephen;
    • Temu, Tecla;
    • Newell, Evan W.;
    • Pakala, Suman;
    • Kalams, Spyros A.;
    • Gianella, Sara;
    • Smith, David;
    • Harrison, David G.;
    • Mallal, Simon A.
    Publication type:
    Article
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    High Sensitivity of Human Leukocyte Antigen-B*5701 as a Marker for Immunologically Confirmed Abacavir Hypersensitivity in White and Black Patients.

    Published in:
    Clinical Infectious Diseases, 2008, v. 46, n. 7, p. 1111, doi. 10.1086/529382
    By:
    • Saag, Michael;
    • Balu, Rukmini;
    • Phillips, Elizabeth;
    • Brachman, Philip;
    • Martorell, Claudia;
    • Burman, William;
    • Stancil, Britt;
    • Mosteller, Michael;
    • Brothers, Cindy;
    • Wannamaker, Paul;
    • Hughes, Arlene;
    • Sutherland-Phillips, Denise;
    • Mallal, Simon;
    • Shaefer, Mark
    Publication type:
    Article
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    Dominant influence of HLA-B in mediating the potential co-evolution of HIV and HLA.

    Published in:
    Nature, 2004, v. 432, n. 7018, p. 769, doi. 10.1038/nature03113
    By:
    • Kiepiela, Photini;
    • Leslie, Alasdair J.;
    • Honeyborne, Isobella;
    • Ramduth, Danni;
    • Thobakgale, Christina;
    • Chetty, Senica;
    • Rathnavalu, Prinisha;
    • Moore, Corey;
    • Pfafferott, Katja J.;
    • Hilton, Louise;
    • Zimbwa, Peter;
    • Moore, Sarah;
    • Allen, Todd;
    • Brander, Christian;
    • Addo, Marylyn M.;
    • Altfeld, Marcus;
    • James, Ian;
    • Mallal, Simon;
    • Bunce, Michael;
    • Barber, Linda D.
    Publication type:
    Article
    15

    Severe COVID-19 Is Associated With an Altered Upper Respiratory Tract Microbiome.

    Published in:
    Frontiers in Cellular & Infection Microbiology, 2022, p. 1, doi. 10.3389/fcimb.2021.781968
    By:
    • Shilts, Meghan H.;
    • Rosas-Salazar, Christian;
    • Strickland, Britton A.;
    • Kimura, Kyle S.;
    • Asad, Mohammad;
    • Sehanobish, Esha;
    • Freeman, Michael H.;
    • Wessinger, Bronson C.;
    • Gupta, Veerain;
    • Brown, Hunter M.;
    • Boone, Helen H.;
    • Patel, Viraj;
    • Barbi, Mali;
    • Bottalico, Danielle;
    • O'Neill, Meaghan;
    • Akbar, Nadeem;
    • Rajagopala, Seesandra V.;
    • Mallal, Simon;
    • Phillips, Elizabeth;
    • Turner, Justin H.
    Publication type:
    Article
    16

    Prostaglandin I2 Signaling and Inhibition of Group 2 Innate Lymphoid Cell Responses.

    Published in:
    2016
    By:
    • Weisong Zhou;
    • Shinji Toki;
    • Jian Zhang;
    • Goleniewksa, Kasia;
    • Newcomb, Dawn C.;
    • Cephus, Jacqueline Y.;
    • Dulek, Daniel E.;
    • Bloodworth, Melissa H.;
    • Stier, Matthew T.;
    • Polosuhkin, Vasiliy;
    • Gangula, Rama D.;
    • Mallal, Simon A.;
    • Broide, David H.;
    • Stokes Peebles Jr, R.;
    • Zhou, Weisong;
    • Toki, Shinji;
    • Zhang, Jian;
    • Peebles, R Stokes Jr
    Publication type:
    journal article
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    Common Genetic Variation and the Control of HIV-1 in Humans.

    Published in:
    PLoS Genetics, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pgen.1000791
    By:
    • Fellay, Jacques;
    • Ge, Dongliang;
    • Shianna, Kevin V.;
    • Colombo, Sara;
    • Ledergerber, Bruno;
    • Cirulli, Elizabeth T.;
    • Urban, Thomas J.;
    • Kunlin Zhang;
    • Gumbs, Curtis E.;
    • Smith, Jason P.;
    • Castagna, Antonella;
    • Cozzi-Lepri, Alessandro;
    • De Luca, Andrea;
    • Easterbrook, Philippa;
    • Günthard, Huldrych F.;
    • Mallal, Simon;
    • Mussini, Cristina;
    • Dalmau, Judith;
    • Martinez-Picado, Javier;
    • Miro, José M.
    Publication type:
    Article
    20

    Dengue-specific CD8+ T cell subsets display specialized transcriptomic and TCR profiles.

    Published in:
    2019
    By:
    • Yuan Tian;
    • Babor, Mariana;
    • Lane, Jerome;
    • Seumois, Grégory;
    • Shu Liang;
    • Suraj Goonawardhana, N. D.;
    • De Silva, Aruna D.;
    • Phillips, Elizabeth J.;
    • Mallal, Simon A.;
    • da Silva Antunes, Ricardo;
    • Grifoni, Alba;
    • Vijayanand, Pandurangan;
    • Weiskopf, Daniela;
    • Peters, Bjoern;
    • Sette, Alessandro;
    • Tian, Yuan;
    • Liang, Shu;
    • Goonawardhana, N D Suraj
    Publication type:
    journal article
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    Urinary Peptides as a novel source of T cell allergen epitopes.

    Published in:
    Frontiers in Immunology, 2018, p. 1, doi. 10.3389/fimmu.2018.00886
    By:
    • da Silva Antunes, Ricardo;
    • Pham, John;
    • McMurtrey, Curtis;
    • Hildebrand, William H.;
    • Phillips, Elizabeth;
    • Mallal, Simon;
    • Sidney, John;
    • Busse, Paula;
    • Peters, Bjoern;
    • Schulten, Véronique;
    • Sette, Alessandro
    Publication type:
    Article
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    Comparison of HLA allelic imputation programs.

    Published in:
    PLoS ONE, 2017, v. 12, n. 2, p. 1, doi. 10.1371/journal.pone.0172444
    By:
    • Karnes, Jason H.;
    • Shaffer, Christian M.;
    • Bastarache, Lisa;
    • Gaudieri, Silvana;
    • Glazer, Andrew M.;
    • Steiner, Heidi E.;
    • Mosley, Jonathan D.;
    • Mallal, Simon;
    • Denny, Joshua C.;
    • Phillips, Elizabeth J.;
    • Roden, Dan M.
    Publication type:
    Article
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    COVID‐19 severity from Omicron and Delta SARS‐CoV‐2 variants.

    Published in:
    Influenza & Other Respiratory Viruses, 2022, v. 16, n. 5, p. 832, doi. 10.1111/irv.12982
    By:
    • Wrenn, Jesse O.;
    • Pakala, Suman B.;
    • Vestal, Grant;
    • Shilts, Meghan H.;
    • Brown, Hunter M.;
    • Bowen, Sara M.;
    • Strickland, Britton A.;
    • Williams, Timothy;
    • Mallal, Simon A.;
    • Jones, Ian D.;
    • Schmitz, Jonathan E.;
    • Self, Wesley H.;
    • Das, Suman R.
    Publication type:
    Article
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    Visual Genomics Analysis Studio as a Tool to Analyze Multiomic Data.

    Published in:
    Frontiers in Genetics, 2021, v. 11, p. 1, doi. 10.3389/fgene.2021.642012
    By:
    • Hertzman, Rebecca J.;
    • Deshpande, Pooja;
    • Leary, Shay;
    • Li, Yueran;
    • Ram, Ramesh;
    • Chopra, Abha;
    • Cooper, Don;
    • Watson, Mark;
    • Palubinsky, Amy M.;
    • Mallal, Simon;
    • Gibson, Andrew;
    • Phillips, Elizabeth J.
    Publication type:
    Article
    31

    Phenome-wide scanning identifies multiple diseases and disease severity phenotypes associated with HLA variants.

    Published in:
    Science Translational Medicine, 2017, v. 9, n. 389, p. 1, doi. 10.1126/scitranslmed.aai8708
    By:
    • Karnes, Jason H.;
    • Bastarache, Lisa;
    • Shaffer, Christian M.;
    • Gaudieri, Silvana;
    • Yaomin Xu;
    • Glazer, Andrew M.;
    • Mosley, Jonathan D.;
    • Shilin Zhao;
    • Raychaudhuri, Soumya;
    • Mallal, Simon;
    • Zhan Ye;
    • Mayer, John G.;
    • Brilliant, Murray H.;
    • Hebbring, Scott J.;
    • Roden, Dan M.;
    • Phillips, Elizabeth J.;
    • Denny, Joshua C.
    Publication type:
    Article
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    Mean Coronary Cross-Sectional Area as a Measure of Arterial Remodeling Using Noncontrast CT Imaging in Persons With HIV.

    Published in:
    2022
    By:
    • Werede, Ayoda T.;
    • Terry, James G.;
    • Nair, Sangeeta;
    • Temu, Tecla M.;
    • Shepherd, Bryan E.;
    • Bailin, Samuel S.;
    • Mashayekhi, Mona;
    • Gabriel, Curtis L.;
    • Lima, Morgan;
    • Woodward, Beverly Owen;
    • Hannah, LaToya;
    • Mallal, Simon A.;
    • Beckman, Joshua A.;
    • Li, Jonathan Z.;
    • Fajnzylber, Jesse;
    • Harrison, David G.;
    • Carr, John Jeffrey;
    • Koethe, John R.;
    • Wanjalla, Celestine N.;
    • Harrison, David
    Publication type:
    journal article
    38

    Association Study of Common Genetic Variants and HIV-1 Acquisition in 6,300 Infected Cases and 7,200 Controls.

    Published in:
    PLoS Pathogens, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.ppat.1003515
    By:
    • McLaren, Paul J.;
    • Coulonges, Cédric;
    • Ripke, Stephan;
    • van den Berg, Leonard;
    • Buchbinder, Susan;
    • Carrington, Mary;
    • Cossarizza, Andrea;
    • Dalmau, Judith;
    • Deeks, Steven G.;
    • Delaneau, Olivier;
    • De Luca, Andrea;
    • Goedert, James J.;
    • Haas, David;
    • Herbeck, Joshua T.;
    • Kathiresan, Sekar;
    • Kirk, Gregory D.;
    • Lambotte, Olivier;
    • Luo, Ma;
    • Mallal, Simon;
    • van Manen, Daniëlle
    Publication type:
    Article
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    Helicobacter pylori genetic diversification in the Mongolian gerbil model.

    Published in:
    PeerJ, 2019, p. 1, doi. 10.7717/peerj.4803
    By:
    • Beckett, Amber C.;
    • Loh, John T.;
    • Chopra, Abha;
    • Leary, Shay;
    • Lin, Aung Soe;
    • McDonnell, Wyatt J.;
    • Dixon, Beverly R. E. A.;
    • Noto, Jennifer M.;
    • Israel, Dawn A.;
    • Peek Jr, Richard M.;
    • Mallal, Simon;
    • Scott Algood, Holly M.;
    • Cover, Timothy L.
    Publication type:
    Article
    45

    Helicobacter pylori genetic diversification in the Mongolian gerbil model.

    Published in:
    PeerJ, 2018, v. 6, p. 1, doi. 10.7717/peerj.4803
    By:
    • Beckett, Amber C.;
    • Loh, John T.;
    • Chopra, Abha;
    • Leary, Shay;
    • Lin, Aung Soe;
    • McDonnell, Wyatt J.;
    • Dixon, Beverly R. E. A.;
    • Noto, Jennifer M.;
    • Israel, Dawn A.;
    • Peek Jr, Richard M.;
    • Mallal, Simon;
    • Scott Algood, Holly M.;
    • Cover, Timothy L.
    Publication type:
    Article
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    Cross-Reactivity to Mutated Viral Immune Targets Can Influence CD8<sup>+</sup> T Cell Functionality: An Alternative Viral Adaptation Strategy.

    Published in:
    Frontiers in Immunology, 2021, v. 12, p. 1, doi. 10.3389/fimmu.2021.746986
    By:
    • Currenti, Jennifer;
    • Law, Becker M.P.;
    • Qin, Kai;
    • John, Mina;
    • Pilkinton, Mark A.;
    • Bansal, Anju;
    • Leary, Shay;
    • Ram, Ramesh;
    • Chopra, Abha;
    • Gangula, Rama;
    • Yue, Ling;
    • Warren, Christian;
    • Barnett, Louise;
    • Alves, Eric;
    • McDonnell, Wyatt J.;
    • Sooda, Anuradha;
    • Heath, Sonya L.;
    • Mallal, Simon;
    • Goepfert, Paul;
    • Kalams, Spyros A.
    Publication type:
    Article
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