OpenURL Connection Search

Select item for more details and to access through your institution.

Next Generation Sequencing and Bioinformatics Methodologies for Infectious Disease Research and Public Health: Approaches, Applications, and Considerations for Development of Laboratory Capacity.
Published in:
2020
By:
- Berry, Irina Maljkovic;
- Melendrez, Melanie C;
- Bishop-Lilly, Kimberly A;
- Rutvisuttinunt, Wiriya;
- Pollett, Simon;
- Talundzic, Eldin;
- Morton, Lindsay;
- Jarman, Richard G;
- Maljkovic Berry, Irina
Publication type:
journal article
Genomic Epidemiology as a Public Health Tool to Combat Mosquito-Borne Virus Outbreaks.
Published in:
2020
By:
- Pollett, S;
- Fauver, J R;
- Berry, Irina Maljkovic;
- Melendrez, M;
- Morrison, A;
- Gillis, L D;
- Johansson, M A;
- Jarman, R G;
- Grubaugh, N D;
- Maljkovic Berry, Irina
Publication type:
journal article
A comparative recombination analysis of human coronaviruses and implications for the SARS-CoV-2 pandemic.
Published in:
Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-96626-8
By:
- Pollett, Simon;
- Conte, Matthew A.;
- Sanborn, Mark;
- Jarman, Richard G.;
- Lidl, Grace M.;
- Modjarrad, Kayvon;
- Maljkovic Berry, Irina
Publication type:
Article
A Department of Defense Laboratory Consortium Approach to Next Generation Sequencing and Bioinformatics Training for Infectious Disease Surveillance in Kenya.
Published in:
Frontiers in Genetics, 2020, v. 11, p. N.PAG, doi. 10.3389/fgene.2020.577563
By:
- Maljkovic Berry, Irina;
- Rutvisuttinunt, Wiriya;
- Voegtly, Logan J.;
- Prieto, Karla;
- Pollett, Simon;
- Cer, Regina Z.;
- Kugelman, Jeffrey R.;
- Bishop-Lilly, Kimberly A.;
- Morton, Lindsay;
- Waitumbi, John;
- Jarman, Richard G.
Publication type:
Article
Precision Tracing of Household Dengue Spread Using Inter- and Intra-Host Viral Variation Data, Kamphaeng Phet, Thailand.
Published in:
2021
By:
- Berry, Irina Maljkovic;
- Melendrez, Melanie C.;
- Pollett, Simon;
- Figueroa, Katherine;
- Buddhari, Darunee;
- Klungthong, Chonticha;
- Nisalak, Ananda;
- Panciera, Michael;
- Thaisomboonsuk, Butsaya;
- Tao Li;
- Vallard, Tyghe G.;
- Macareo, Louis;
- In-Kyu Yoon;
- Thomas, Stephen J.;
- Endy, Timothy;
- Jarman, Richard G.;
- Li, Tao;
- Yoon, In-Kyu
Publication type:
journal article
Human Adenovirus Type 55 Distribution, Regional Persistence, and Genetic Variability.
Published in:
2020
By:
- Jun Hang;
- Kajon, Adriana E.;
- Graf, Paul C. F.;
- Berry, Irina Maljkovic;
- Yu Yang;
- Sanborn, Mark A.;
- Fung, Christian K.;
- Adhikari, Anima;
- Balansay-Ames, Melinda S.;
- Myers, Christopher A.;
- Binn, Leonard N.;
- Jarman, Richard G.;
- Kuschner, Robert A.;
- Collins, Natalie D.;
- Hang, Jun;
- Yang, Yu
Publication type:
journal article
Origin and evolution of dengue virus type 2 causing outbreaks in Kenya: Evidence of circulation of two cosmopolitan genotype lineages.
Published in:
Virus Evolution, 2020, v. 6, n. 1, p. 1, doi. 10.1093/ve/veaa026
By:
- Langat, Solomon K;
- Eyase, Fredrick Lunyagi;
- Berry, Irina Maljkovic;
- Nyunja, Albert;
- Bulimo, Wallace;
- Owaka, Samuel;
- Ofula, Victor;
- Limbaso, Samson;
- Lutomiah, Joel;
- Jarman, Richard;
- Distelhorst, John;
- Sang, Rosemary C
Publication type:
Article
A Phase 1 Two-Arm, Randomized, Double-Blind, Active-Controlled Study of Live, Oral Plasmid-Derived Adenovirus Type 4 and Type 7 Vaccines in Seronegative Adults.
Published in:
Vaccines, 2023, v. 11, n. 6, p. 1091, doi. 10.3390/vaccines11061091
By:
- Beaty, Shannon;
- Collins, Natalie;
- Karasavvas, Nicos;
- Kuschner, Robert;
- Hang, Jun;
- Adhikari, Anima;
- Maljkovic Berry, Irina;
- Fung, Christian;
- Walls, Shannon;
- Betancourt, Elena;
- Mendy, Jason;
- Lock, Michael;
- Gierman, Emma;
- Bennett, Sean;
- Shabram, Paul;
- Warfield, Kelly
Publication type:
Article
Reconstructing unseen transmission events to infer dengue dynamics from viral sequences.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-21888-9
By:
- Salje, Henrik;
- Wesolowski, Amy;
- Brown, Tyler S.;
- Kiang, Mathew V.;
- Berry, Irina Maljkovic;
- Lefrancq, Noemie;
- Fernandez, Stefan;
- Jarman, Richard G.;
- Ruchusatsawat, Kriangsak;
- Iamsirithaworn, Sopon;
- Vandepitte, Warunee P.;
- Suntarattiwong, Piyarat;
- Read, Jonathan M.;
- Klungthong, Chonticha;
- Thaisomboonsuk, Butsaya;
- Engø-Monsen, Kenth;
- Buckee, Caroline;
- Cauchemez, Simon;
- Cummings, Derek A. T.
Publication type:
Article
Correction: Recommended reporting items for epidemic forecasting and prediction research: The EPIFORGE 2020 guidelines.
Published in:
2023
By:
- Pollett, Simon;
- Johansson, Michael A.;
- Reich, Nicholas G.;
- Brett-Major, David;
- Del Valle, Sara Y.;
- Venkatramanan, Srinivasan;
- Lowe, Rachel;
- Porco, Travis;
- Berry, Irina Maljkovic;
- Deshpande, Alina;
- Kraemer, Moritz U. G.;
- Blazes, David L.;
- Pan-ngum, Wirichada;
- Vespigiani, Alessandro;
- Mate, Suzanne E.;
- Silal, Sheetal P.;
- Kandula, Sasikiran;
- Sippy, Rachel;
- Quandelacy, Talia M.;
- Morgan, Jeffrey J.
Publication type:
Correction Notice
The origins of dengue and chikungunya viruses in Ecuador following increased migration from Venezuela and Colombia.
Published in:
BMC Evolutionary Biology, 2020, v. 20, n. 1, p. 1, doi. 10.1186/s12862-020-1596-8
By:
- Maljkovic Berry, Irina;
- Rutvisuttinunt, Wiriya;
- Sippy, Rachel;
- Beltran-Ayala, Efrain;
- Figueroa, Katherine;
- Ryan, Sadie;
- Srikanth, Abhinaya;
- Stewart-Ibarra, Anna M.;
- Endy, Timothy;
- Jarman, Richard G.
Publication type:
Article
Transmission of SARS-CoV-2 among recruits in a US Army training environment: a brief report.
Published in:
Journal of Public Health, 2023, v. 45, n. 3, p. 748, doi. 10.1093/pubmed/fdad026
By:
- Hakre, Shilpa;
- Maljkovic-Berry, Irina;
- Hang, Jun;
- Conte, Matthew A;
- Pollio, Adam R;
- Fung, Christian K;
- Gandhi, Jaykumar;
- Peel, Sheila A;
- Lidl, Grace M;
- Huhtanen, Mark E;
- Hall, Tara L;
- Modjarrad, Kayvon;
- Friberg, Heather L;
- O'Connell, Robert J;
- Scott, Paul T
Publication type:
Article
Beneath the surface: Amino acid variation underlying two decades of dengue virus antigenic dynamics in Bangkok, Thailand.
Published in:
PLoS Pathogens, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.ppat.1010500
By:
- Huang, Angkana T.;
- Salje, Henrik;
- Escoto, Ana Coello;
- Chowdhury, Nayeem;
- Chávez, Christian;
- Garcia-Carreras, Bernardo;
- Rutvisuttinunt, Wiriya;
- Maljkovic Berry, Irina;
- Gromowski, Gregory D.;
- Wang, Lin;
- Klungthong, Chonticha;
- Thaisomboonsuk, Butsaya;
- Nisalak, Ananda;
- Trimmer-Smith, Luke M.;
- Rodriguez-Barraquer, Isabel;
- Ellison, Damon W.;
- Jones, Anthony R.;
- Fernandez, Stefan;
- Thomas, Stephen J.;
- Smith, Derek J.
Publication type:
Article
Using "outbreak science" to strengthen the use of models during epidemics.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-11067-2
By:
- Rivers, Caitlin;
- Chretien, Jean-Paul;
- Riley, Steven;
- Pavlin, Julie A.;
- Woodward, Alexandra;
- Brett-Major, David;
- Maljkovic Berry, Irina;
- Morton, Lindsay;
- Jarman, Richard G.;
- Biggerstaff, Matthew;
- Johansson, Michael A.;
- Reich, Nicholas G.;
- Meyer, Diane;
- Snyder, Michael R.;
- Pollett, Simon
Publication type:
Article
Emergence of a novel chikungunya virus strain bearing the E1:V80A substitution, out of the Mombasa, Kenya 2017-2018 outbreak.
Published in:
PLoS ONE, 2020, v. 15, n. 11, p. 1, doi. 10.1371/journal.pone.0241754
By:
- Eyase, Fredrick;
- Langat, Solomon;
- Berry, Irina Maljkovic;
- Mulwa, Francis;
- Nyunja, Albert;
- Mutisya, James;
- Owaka, Samuel;
- Limbaso, Samson;
- Ofula, Victor;
- Koka, Hellen;
- Koskei, Edith;
- Lutomiah, Joel;
- Jarman, Richard G.;
- Sang, Rosemary
Publication type:
Article
Analysis of cell-associated DENV RNA by oligo(dT) primed 5' capture scRNAseq.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-65939-5
By:
- Sanborn, Mark A.;
- Li, Tao;
- Victor, Kaitlin;
- Siegfried, Hayden;
- Fung, Christian;
- Rothman, Alan L.;
- Srikiatkhachorn, Anon;
- Fernandez, Stefan;
- Ellison, Damon;
- Jarman, Richard G.;
- Friberg, Heather;
- Maljkovic Berry, Irina;
- Currier, Jeffrey R.;
- Waickman, Adam T.
Publication type:
Article
Establishment of SARS-CoV-2 Genomic Surveillance Within the Military Health System During 1 March-31 December 2020.
Published in:
MSMR, 2022, v. 29, n. 7, p. 11
By:
- Morton, Lindsay C.;
- Forshey, Brett M.;
- Bishop-Lilly, Kimberly A.;
- Cer, Regina Z.;
- Fries, Anthony;
- Bogue, Amy L.;
- Underwood, Ryan;
- Bazaco, Sara;
- Starr, Clarise;
- Gruner, William;
- Malagon, Francisco;
- Myers, Christopher A.;
- Maljkovic Berry, Irina;
- Kugelman, Jeffrey R.;
- Creppage, Kathleen;
- Scheckelhoff, Mark;
- Taylor, Kevin;
- Pimentel, Guillermo
Publication type:
Article
Recommended reporting items for epidemic forecasting and prediction research: The EPIFORGE 2020 guidelines.
Published in:
2021
By:
- Pollett, Simon;
- Johansson, Michael A.;
- Reich, Nicholas G.;
- Brett-Major, David;
- Del Valle, Sara Y.;
- Venkatramanan, Srinivasan;
- Lowe, Rachel;
- Porco, Travis;
- Berry, Irina Maljkovic;
- Deshpande, Alina;
- Kraemer, Moritz U. G.;
- Blazes, David L.;
- Pan-ngum, Wirichada;
- Vespigiani, Alessandro;
- Mate, Suzanne E.;
- Silal, Sheetal P.;
- Kandula, Sasikiran;
- Sippy, Rachel;
- Quandelacy, Talia M.;
- Morgan, Jeffrey J.
Publication type:
journal article
Intrahost SARS-CoV-2 k-mer Identification Method (iSKIM) for Rapid Detection of Mutations of Concern Reveals Emergence of Global Mutation Patterns.
Published in:
Viruses (1999-4915), 2022, v. 14, n. 10, p. N.PAG, doi. 10.3390/v14102128
By:
- Thommana, Ashley;
- Shakya, Migun;
- Gandhi, Jaykumar;
- Fung, Christian K.;
- Chain, Patrick S. G.;
- Maljkovic Berry, Irina;
- Conte, Matthew A.
Publication type:
Article
Infectious Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) in Exhaled Aerosols and Efficacy of Masks During Early Mild Infection.
Published in:
Clinical Infectious Diseases, 2022, v. 75, n. 1, p. e241, doi. 10.1093/cid/ciab797
By:
- Adenaiye, Oluwasanmi O;
- Lai, Jianyu;
- Mesquita, P Jacob Bueno de;
- Hong, Filbert;
- Youssefi, Somayeh;
- German, Jennifer;
- Tai, S H Sheldon;
- Albert, Barbara;
- Schanz, Maria;
- Weston, Stuart;
- Hang, Jun;
- Fung, Christian;
- Chung, Hye Kyung;
- Coleman, Kristen K;
- Sapoval, Nicolae;
- Treangen, Todd;
- Berry, Irina Maljkovic;
- Mullins, Kristin;
- Frieman, Matthew;
- Ma, Tianzhou
Publication type:
Article
Frequency of influenza H3N2 intra-subtype reassortment: attributes and implications of reassortant spread.
Published in:
BMC Biology, 2016, v. 14, p. 1, doi. 10.1186/s12915-016-0337-3
By:
- Maljkovic Berry, Irina;
- Melendrez, Melanie C.;
- Tao Li;
- Hawksworth, Anthony W.;
- Brice, Gary T.;
- Blair, Patrick J.;
- Halsey, Eric S.;
- Williams, Maya;
- Fernandez, Stefan;
- In-Kyu Yoon;
- Edwards, Leslie D.;
- Kuschner, Robert;
- Xiaoxu Lin;
- Thomas, Stephen J.;
- Jarman, Richard G.
Publication type:
Article
Human APOBEC3 Induced Mutation of Human Immunodeficiency Virus Type-1 Contributes to Adaptation and Evolution in Natural Infection.
Published in:
PLoS Pathogens, 2014, v. 10, n. 7, p. 1, doi. 10.1371/journal.ppat.1004281
By:
- Kim, Eun-Young;
- Lorenzo-Redondo, Ramon;
- Little, Susan J.;
- Chung, Yoon-Seok;
- Phalora, Prabhjeet K.;
- Maljkovic Berry, Irina;
- Archer, John;
- Penugonda, Sudhir;
- Fischer, Will;
- Richman, Douglas D.;
- Bhattacharya, Tanmoy;
- Malim, Michael H.;
- Wolinsky, Steven M.
Publication type:
Article
Global Outbreaks and Origins of a Chikungunya Virus Variant Carrying Mutations Which May Increase Fitness for Aedes aegypti: Revelations from the 2016 Mandera, Kenya Outbreak.
Published in:
American Journal of Tropical Medicine & Hygiene, 2019, v. 100, n. 5, p. 1249, doi. 10.4269/ajtmh.18-0980
By:
- Berry, Irina Maljkovic;
- Eyase, Fredrick;
- Pollett, Simon;
- Konongoi, Samson Limbaso;
- Joyce, Michael Gordon;
- Figueroa, Katherine;
- Ofula, Victor;
- Koka, Helen;
- Koskei, Edith;
- Nyunja, Albert;
- Mancuso, James D.;
- Jarman, Richard G.;
- Sang, Rosemary
Publication type:
Article
The Burden of Dengue Fever and Chikungunya in Southern Coastal Ecuador: Epidemiology, Clinical Presentation, and Phylogenetics from the First Two Years of a Prospective Study.
Published in:
American Journal of Tropical Medicine & Hygiene, 2018, v. 98, n. 5, p. 1444, doi. 10.4269/ajtmh.17-0762
By:
- Stewart-Ibarra, Anna M.;
- Ryan, Sadie J.;
- Kenneson, Aileen;
- King, Christine A.;
- Abbott, Mark;
- Barbachano-Guerrero, Arturo;
- Beltrán-Ayala, Efraín;
- Borbor-Cordova, Mercy J.;
- Cárdenas, Washington B.;
- Cueva, Cinthya;
- Finkelstein, Julia L.;
- Lupone, Christina D.;
- Jarman, Richard G.;
- Berry, Irina Maljkovic;
- Mehta, Saurabh;
- Polhemus, Mark;
- Silva, Mercy;
- Endy, Timothy P.
Publication type:
Article
Metagenomic analysis reveals Culex mosquito virome diversity and Japanese encephalitis genotype V in the Republic of Korea.
Published in:
Molecular Ecology, 2021, v. 30, n. 21, p. 5470, doi. 10.1111/mec.16133
By:
- Sanborn, Mark A.;
- Wuertz, Kathryn McGuckin;
- Kim, Heung‐Chul;
- Yang, Yu;
- Li, Tao;
- Pollett, Simon D.;
- Jarman, Richard G.;
- Berry, Irina Maljkovic;
- Klein, Terry A.;
- Hang, Jun
Publication type:
Article
Antigenic distance between primary and secondary dengue infections correlates with disease risk.
Published in:
Science Translational Medicine, 2024, v. 16, n. 744, p. 1, doi. 10.1126/scitranslmed.adk3259
By:
- Wang, Lin;
- Huang, Angkana T.;
- Katzelnick, Leah C.;
- Lefrancq, Noémie;
- Escoto, Ana Coello;
- Duret, Loréna;
- Chowdhury, Nayeem;
- Jarman, Richard;
- Conte, Matthew A.;
- Berry, Irina Maljkovic;
- Fernandez, Stefan;
- Klungthong, Chonticha;
- Thaisomboonsuk, Butsaya;
- Suntarattiwong, Piyarat;
- Vandepitte, Warunee;
- Whitehead, Stephen S.;
- Cauchemez, Simon;
- Cummings, Derek A. T.;
- Salje, Henrik
Publication type:
Article
Precision Medicine and Precision Public Health in the Era of Pathogen Next-Generation Sequencing.
Published in:
2020
By:
- Leguia, Mariana;
- Vila-Sanjurjo, Anton;
- Chain, Patrick S G;
- Berry, Irina Maljkovic;
- Jarman, Richard G;
- Pollett, Simon
Publication type:
research
Genomic surveillance of SARS-CoV-2 in US military compounds in Afghanistan reveals multiple introductions and outbreaks of Alpha and Delta variants.
Published in:
BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08757-5
By:
- Maljkovic Berry, Irina;
- Hang, Jun;
- Fung, Christian;
- Yang, Yu;
- Chibucos, Marcus;
- Pollio, Adam;
- Gandhi, Jay;
- Li, Tao;
- Conte, Matthew A.;
- Lidl, Grace M.;
- Johannigman, Jay A.;
- Friberg, Heather
Publication type:
Article

Found: 28