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MultiPhATE2: code for functional annotation and comparison of phage genomes.
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- G3: Genes | Genomes | Genetics, 2021, v. 11, n. 5, p. 1, doi. 10.1093/g3journal/jkab074
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- Article
Utilizing Amino Acid Composition and Entropy of Potential Open Reading Frames to Identify Protein-Coding Genes.
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- Microorganisms, 2021, v. 9, n. 1, p. 129, doi. 10.3390/microorganisms9010129
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- Article
multiPhATE: bioinformatics pipeline for functional annotation of phage isolates.
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- Bioinformatics, 2019, v. 35, n. 21, p. 4402, doi. 10.1093/bioinformatics/btz258
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- Article
Prospects for Fungal Bioremediation of Acidic Radioactive Waste Sites: Characterization and Genome Sequence of Rhodotorula taiwanensis MD1149.
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- Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2017.02528
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- Article
Major changes in microbial diversity and community composition across gut sections of a juvenile Panchlora cockroach.
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- PLoS ONE, 2017, v. 12, n. 5, p. 1, doi. 10.1371/journal.pone.0177189
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- Article
A comprehensive multi-omics approach uncovers adaptations for growth and survival of Pseudomonas aeruginosa on n-alkanes.
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- BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3708-4
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- Article
Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California.
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- Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1259, doi. 10.4056/sigs.5029016
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- Article
Temporal dynamics of fibrolytic and methanogenic rumen microorganisms during in situ incubation of switchgrass determined by 16S rRNA gene profiling.
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- Frontiers in Microbiology, 2014, v. 5, p. 1, doi. 10.3389/fmicb.2014.00307
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- Article
Temporal dynamics of fibrolytic and methanogenic rumen microorganisms during in situ incubation of switchgrass determined by 16S rRNA gene profiling.
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- Frontiers in Microbiology, 2014, v. 5, p. 1, doi. 10.3389/fmicb.2014.00307
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- Article
Comparative genomics of two 'Candidatus Accumulibacter' clades performing biological phosphorus removal.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 12, p. 2301, doi. 10.1038/ismej.2013.117
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Insights into the phylogeny and coding potential of microbial dark matter.
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- Nature, 2013, v. 499, n. 7459, p. 431, doi. 10.1038/nature12352
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- Article
Proteogenomic Analysis of a Thermophilic Bacterial Consortium Adapted to Deconstruct Switchgrass.
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- PLoS ONE, 2013, v. 8, n. 7, p. 1, doi. 10.1371/journal.pone.0068465
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- Article
Community-wide plasmid gene mobilization and selection.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 6, p. 1173, doi. 10.1038/ismej.2013.13
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- Article
Metagenomes of tropical soil-derived anaerobic switchgrass-adapted consortia with and without iron.
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- Standards in Genomic Sciences, 2013, v. 7, n. 3, p. 382, doi. 10.4056/sigs.3377516
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- Article
Comparative Genomics Suggests an Independent Origin of Cytoplasmic Incompatibility in Cardinium hertigii.
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- PLoS Genetics, 2012, v. 8, n. 10, p. 1, doi. 10.1371/journal.pgen.1003012
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- Article
Deep-sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill.
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- Environmental Microbiology, 2012, v. 14, n. 9, p. 2405, doi. 10.1111/j.1462-2920.2012.02780.x
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- Article
Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 9, p. 1715, doi. 10.1038/ismej.2012.59
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Defining the core Arabidopsis thaliana root microbiome.
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- Nature, 2012, v. 488, n. 7409, p. 86, doi. 10.1038/nature11237
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Mesophilic and Thermophilic Conditions Select for Unique but Highly Parallel Microbial Communities to Perform Carboxylate Platform Biomass Conversion.
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- PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0039689
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The Metagenome of an Anaerobic Microbial Community Decomposing Poplar Wood Chips.
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- PLoS ONE, 2012, v. 7, n. 5, p. 1, doi. 10.1371/journal.pone.0036740
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The Genome of Akkermansia muciniphila, a Dedicated Intestinal Mucin Degrader, and Its Use in Exploring Intestinal Metagenomes.
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- PLoS ONE, 2011, v. 6, n. 3, p. 1, doi. 10.1371/journal.pone.0016876
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Structure and dynamics of the microbial communities underlying the carboxylate platform for biofuel production.
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- Applied Microbiology & Biotechnology, 2010, v. 88, n. 1, p. 389, doi. 10.1007/s00253-010-2789-7
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The Complete Plastid Genome Sequence of the Secondarily Nonphotosynthetic Alga Cryptomonas paramecium: Reduction, Compaction, and Accelerated Evolutionary Rate.
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- Genome Biology & Evolution, 2009, v. 1, p. 439, doi. 10.1093/gbe/evp047
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The complete genome sequence of Francisella tularensis, the causative agent of tularemia.
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- Nature Genetics, 2005, v. 37, n. 2, p. 153, doi. 10.1038/ng1499
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Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris.
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- Nature Biotechnology, 2004, v. 22, n. 1, p. 55, doi. 10.1038/nbt923
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Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation.
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- Nature, 2003, v. 424, n. 6952, p. 1042, doi. 10.1038/nature01947
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- Article