Works by Makowski, Lee

Results: 41

Multiscale deconstruction of molecular architecture in corn stover.

Published in:

Scientific Reports, 2014, p. 1, doi. 10.1038/srep03756

By:

Inouye, Hideyo;
Yan Zhang;
Lin Yang;
Venugopalan, Nagarajan;
Fischetti, Robert F.;
Charlotte Gleber, S.;
Vogt, Stefan;
Fowle, W.;
Makowski, Bryan;
Tucker, Melvin;
Ciesielski, Peter;
Donohoe, Bryon;
Matthews, James;
Himmel, Michael E.;
Makowski, Lee

Publication type:

Article

Three-dimensional Imaging of Crystalline Inclusions Embedded in Intact Maize Stalks.

Published in:

Scientific Reports, 2013, p. 1, doi. 10.1038/srep02843

By:

Badger, John;
Lal, Jyotsana;
Harder, Ross;
Inouye, Hideyo;
Charlotte Gleber, S.;
Vogt, Stefan;
Robinson, Ian;
Makowski, Lee

Publication type:

Article

Book Reviews.

Published in:

2000

By:

Makowski, Lee

Publication type:

Book Review

Biological and Clinical Consequences of Integrin Binding via a Rogue RGD Motif in the SARS CoV-2 Spike Protein.

Published in:

Viruses (1999-4915), 2021, v. 13, n. 2, p. 146, doi. 10.3390/v13020146

By:

Makowski, Lee;
Olson-Sidford, William;
W. Weisel, John;
Martinez-Sobrido, Luis

Publication type:

Article

Data‐driven model of the KRas4B/Calmodulin complex.

Published in:

FASEB Journal, 2021, v. 35, p. N.PAG, doi. 10.1096/fasebj.2021.35.S1.04058

By:

Ojeda, Monica;
Marcus, Kendra;
Jang, Hyunbum;
Banerjee, Avik;
Makowski, Lee;
Nussinov, Ruth;
Gaponenko, Vadim;
Mattos, Carla

Publication type:

Article

Raf promotes dimerization of the Ras G‐domain with increased allosteric connections.

Published in:

FASEB Journal, 2021, v. 35, p. N.PAG, doi. 10.1096/fasebj.2021.35.S1.03183

By:

Packer, Morgan;
Parker, Jillian;
Chung, Jean;
Li, Zhenlu;
Lee, Young;
Cookis, Trinity;
Guterres, Hugo;
Alvarez, Steven;
Hossain, MD;
Donnelly, Daniel;
Agar, Jeffrey;
Makowski, Lee;
Buck, Matthias;
Groves, Jay;
Mattos, Carla

Publication type:

Article

T7 lytic phage-displayed peptide libraries exhibit less sequence bias than M13 filamentous phage-displayed peptide libraries.

Published in:

Proteomics, 2006, v. 6, n. 15, p. 4210, doi. 10.1002/pmic.200500606

By:

Lauren R. H. Krumpe;
Andrew J. Atkinson;
Gary W. Smythers;
Andrea Kandel;
Kathryn M. Schumacher;
James B. McMahon;
Lee Makowski;
Toshiyuki Mori

Publication type:

Article

FiXR: a framework to reconstruct fiber cross‐sections from X‐ray fiber diffraction experiments.

Published in:

Acta Crystallographica: Section D, Structural Biology, 2020, v. 76, n. 2, p. 102, doi. 10.1107/S2059798319015961

By:

Roig-Solvas, Biel;
Brooks, Dana H.;
Makowski, Lee

Publication type:

Article

Probing remote residues important for catalysis in Escherichia coli ornithine transcarbamoylase.

Published in:

PLoS ONE, 2020, v. 15, n. 2, p. 1, doi. 10.1371/journal.pone.0228487

By:

Ngu, Lisa;
Winters, Jenifer N.;
Nguyen, Kien;
Ramos, Kevin E.;
DeLateur, Nicholas A.;
Makowski, Lee;
Whitford, Paul C.;
Ondrechen, Mary Jo;
Beuning, Penny J.

Publication type:

Article

Don Caspar, TMV, and protein-protein interactions.

Published in:

Proteins, 1998, v. 30, n. 2, p. 109, doi. 10.1002/(SICI)1097-0134(19980201)30:2<109::AID-PROT1>3.0.CO;2-I

By:

Makowski, Lee

Publication type:

Article

Shuffling of structural elements in filamentous bacteriophages.

Published in:

Proteins, 1997, v. 27, n. 3, p. 405, doi. 10.1002/(SICI)1097-0134(199703)27:3<405::AID-PROT8>3.0.CO;2-B

By:

Kishchenko, Gregory;
Makowski, Lee

Publication type:

Article

DIVAA: analysis of amino acid diversity in multiple aligned protein sequences.

Published in:

Bioinformatics, 2004, v. 20, n. 18, p. 3481, doi. 10.1093/bioinformatics/bth432

By:

Rodi, Diane J.;
Mandava, Suneeta;
Makowski, Lee

Publication type:

Article

Estimating the diversity of peptide populations from limited sequence data.

Published in:

Bioinformatics, 2003, v. 19, n. 4, p. 483, doi. 10.1093/bioinformatics/btg013

By:

Makowski, Lee;
Soares, Alexei

Publication type:

Article

Breakdown of hierarchical architecture in cellulose during dilute acid pretreatments.

Published in:

Cellulose, 2015, v. 22, n. 3, p. 1495, doi. 10.1007/s10570-015-0592-4

By:

Zhang, Yan;
Inouye, Hideyo;
Yang, Lin;
Himmel, Michael;
Tucker, Melvin;
Makowski, Lee

Publication type:

Article

Structure of the Catalytic Domain of a Plant Cellulose Synthase and Its Assembly into Dimers.

Published in:

Plant Cell, 2014, v. 26, n. 7, p. 2996, doi. 10.1105/tpc.114.126862

By:

Olek, Anna T.;
Rayon, Catherine;
Makowski, Lee;
Kim, Hyung Rae;
Ciesielski, Peter;
Badger, John;
Paul, Lake N.;
Ghosh, Subhangi;
Kihara, Daisuke;
Crowley, Michael;
Himmel, Michael E.;
Bolin, Jeffrey T.;
Carpita, Nicholas C.

Publication type:

Article

Predicting X‐ray solution scattering from flexible macromolecules.

Published in:

Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 12, p. 2023, doi. 10.1002/pro.3508

By:

Zhou, Hao;
Guterres, Hugo;
Mattos, Carla;
Makowski, Lee

Publication type:

Article

Modulation of hemoglobin dynamics by an allosteric effector.

Published in:

Protein Science: A Publication of the Protein Society, 2017, v. 26, n. 3, p. 505, doi. 10.1002/pro.3099

By:

Lal, Jyotsana;
Maccarini, Marco;
Fouquet, Peter;
Ho, Nancy T.;
Ho, Chien;
Makowski, Lee

Publication type:

Article

SoftWAXS: a computational tool for modeling wide-angle X-ray solution scattering from biomolecules.

Published in:

Journal of Applied Crystallography, 2009, v. 42, n. 5, p. 932, doi. 10.1107/S0021889809032919

By:

Bardhan, Jaydeep;
Sanghyun Park;
Makowski, Lee

Publication type:

Article

Cover Image, Volume 86, Issue 3.

Published in:

Proteins, 2018, v. 86, n. 3, p. C1, doi. 10.1002/prot.25462

By:

Wang, Yujing;
Makowski, Lee

Publication type:

Article

Fine structure of conformational ensembles in adenylate kinase.

Published in:

Proteins, 2018, v. 86, n. 3, p. 332, doi. 10.1002/prot.25443

By:

Wang, Yujing;
Makowski, Lee

Publication type:

Article

Visualizing global properties of a molecular dynamics trajectory.

Published in:

Proteins, 2016, v. 84, n. 1, p. 82, doi. 10.1002/prot.24957

By:

Zhou, Hao;
Li, Shangyang;
Makowski, Lee

Publication type:

Article

Modulation of HIV protease flexibility by the T80N mutation.

Published in:

Proteins, 2015, v. 83, n. 11, p. 1929, doi. 10.1002/prot.24737

By:

Zhou, Hao;
Li, Shangyang;
Badger, John;
Nalivaika, Ellen;
Cai, Yufeng;
Foulkes‐Murzycki, Jennifer;
Schiffer, Celia;
Makowski, Lee

Publication type:

Article

Taxol found on tubulin.

Published in:

Nature, 1995, v. 375, n. 6530, p. 361, doi. 10.1038/375361a0

By:

Makowski, Lee

Publication type:

Article

Structural polymorphism of bacterial adhesion pili.

Published in:

Nature, 1995, v. 373, n. 6510, p. 164, doi. 10.1038/373164a0

By:

Bullitt, Esther;
Makowski, Lee

Publication type:

Article

The impact of alterations in lignin deposition on cellulose organization of the plant cell wall.

Published in:

Biotechnology for Biofuels, 2016, v. 9, p. 1, doi. 10.1186/s13068-016-0540-z

By:

Jiliang Liu;
Jeong Im Kim;
Cusumano, Joanne C.;
Chapple, Clint;
Venugopalan, Nagarajan;
Fischetti, Robert F.;
Makowski, Lee

Publication type:

Article

Multi-scale processes of beech wood disintegration and pretreatment with 1-ethyl-3-methylimidazolium acetate/water mixtures.

Published in:

Biotechnology for Biofuels, 2016, v. 9, p. 1, doi. 10.1186/s13068-015-0422-9

By:

Viell, Jörn;
Inouye, Hideyo;
Noemi K. Szekely;
Frielinghaus, Henrich;
Marks, Caroline;
Yumei Wang;
Anders, Nico;
Spiess, Antje C.;
Makowski, Lee

Publication type:

Article

Rice Cellulose SynthaseA8 Plant-Conserved Region Is a Coiled-Coil at the Catalytic Core Entrance.

Published in:

Plant Physiology, 2017, v. 173, n. 1, p. 482, doi. 10.1104/pp.16.00739

By:

Rushton, Phillip S.;
Olek, Anna T.;
Makowski, Lee;
Badger, John;
Steussy, C. Nicklaus;
Carpita, Nicholas C.;
Stauffacher, Cynthia V.

Publication type:

Article

X-ray solution scattering studies of the structural diversity intrinsic to protein ensembles.

Published in:

Biopolymers, 2011, v. 95, n. 8, p. 531, doi. 10.1002/bip.21631

By:

Makowski, Lee;
Gore, David;
Mandava, Suneeta;
Minh, David;
Park, Sanghyun;
Rodi, Diane J.;
Fischetti, Robert F.

Publication type:

Article

High-resolution wide-angle X-ray scattering of protein solutions: effect of beam dose on protein integrity.

Published in:

Journal of Synchrotron Radiation, 2003, v. 10, n. 5, p. 398, doi. 10.1107/S0909049503016583

By:

Fischetti, Robert F.;
Rodi, Diane J.;
Mirza, Ahmed;
Irving, Thomas C.;
Kondrashkina, Elena;
Lee Makowski

Publication type:

Article

Characterization of sub‐micrometre‐sized voids in fixed human brain tissue using scanning X‐ray microdiffraction.

Published in:

Journal of Applied Crystallography, 2024, v. 57, n. 5, p. 1528, doi. 10.1107/S1600576724008987

By:

Nepal, Prakash;
Bashit, Abdullah A.;
Makowski, Lee

Publication type:

Article

Small‐angle X‐ray microdiffraction from fibrils embedded in tissue thin sections.

Published in:

Journal of Applied Crystallography, 2022, v. 55, n. 6, p. 1562, doi. 10.1107/S1600576722009955

By:

Nepal, Prakash;
Al Bashit, Abdullah;
Yang, Lin;
Makowski, Lee

Publication type:

Article

A direct approach to estimate the anisotropy of protein structures from small‐angle X‐ray scattering.

Published in:

Journal of Applied Crystallography, 2019, v. 52, n. 2, p. 274, doi. 10.1107/S1600576719000918

By:

Roig-Solvas, Biel;
Brooks, Dana;
Makowski, Lee

Publication type:

Article

Diffraction pattern simulation of cellulose fibrils using distributed and quantized pair distances.

Published in:

Journal of Applied Crystallography, 2016, v. 49, n. 6, p. 2244, doi. 10.1107/S1600576716013297

By:

Zhang, Yan;
Inouye, Hideyo;
Crowley, Michael;
Yu, Leiming;
Kaeli, David;
Makowski, Lee

Publication type:

Article

Cell wall targeted in planta iron accumulation enhances biomass conversion and seed iron concentration in Arabidopsis and rice.

Published in:

Plant Biotechnology Journal, 2016, v. 14, n. 10, p. 1998, doi. 10.1111/pbi.12557

By:

Yang, Haibing;
Wei, Hui;
Ma, Guojie;
Antunes, Mauricio S.;
Vogt, Stefan;
Cox, Joseph;
Zhang, Xiao;
Liu, Xiping;
Bu, Lintao;
Gleber, S. Charlotte;
Carpita, Nicholas C.;
Makowski, Lee;
Himmel, Michael E.;
Tucker, Melvin P.;
McCann, Maureen C.;
Murphy, Angus S.;
Peer, Wendy A.

Publication type:

Article

Myelin Organization in the Nodal, Paranodal, and Juxtaparanodal Regions Revealed by Scanning X-Ray Microdiffraction.

Published in:

PLoS ONE, 2014, v. 9, n. 7, p. 1, doi. 10.1371/journal.pone.0100592

By:

Inouye, Hideyo;
Liu, Jiliang;
Makowski, Lee;
Palmisano, Marilena;
Burghammer, Manfred;
Riekel, Christian;
Kirschner, Daniel A.

Publication type:

Article

Mapping the Spatial Distribution of Fibrillar Polymorphs in Human Brain Tissue.

Published in:

Frontiers in Neuroscience, 2022, v. 16, p. 1, doi. 10.3389/fnins.2022.909542

By:

Bashit, Abdullah Al;
Nepal, Prakash;
Connors, Theresa;
Oakley, Derek H.;
Hyman, Bradley T.;
Yang, Lin;
Makowski, Lee

Publication type:

Article

Genome-wide characterisation of the binding repertoire of small molecule drugs.

Published in:

Human Genomics, 2003, v. 1, n. 1, p. 41, doi. 10.1186/1479-7364-1-1-41

By:

Makowski, Lee;
Rodi, Diane J.

Publication type:

Article

Amyloid structure exhibits polymorphism on multiple length scales in human brain tissue.

Published in:

Scientific Reports, 2016, p. 33079, doi. 10.1038/srep33079

By:

Liu, Jiliang;
Costantino, Isabel;
Venugopalan, Nagarajan;
Fischetti, Robert F.;
Hyman, Bradley T.;
Frosch, Matthew P.;
Gomez-Isla, Teresa;
Makowski, Lee

Publication type:

Article

Overcoming cellulose recalcitrance in woody biomass for the lignin-first biorefinery.

Published in:

Biotechnology for Biofuels, 2019, v. 12, n. 1, p. N.PAG, doi. 10.1186/s13068-019-1503-y

By:

Yang, Haibing;
Zhang, Ximing;
Luo, Hao;
Liu, Baoyuan;
Shiga, Tânia M.;
Li, Xu;
Kim, Jeong Im;
Rubinelli, Peter;
Overton, Jonathan C.;
Subramanyam, Varun;
Cooper, Bruce R.;
Mo, Huaping;
Abu-Omar, Mahdi M.;
Chapple, Clint;
Donohoe, Bryon S.;
Makowski, Lee;
Mosier, Nathan S.;
McCann, Maureen C.;
Carpita, Nicholas C.;
Meilan, Richard

Publication type:

Article

Enhanced rates of enzymatic saccharification and catalytic synthesis of biofuel substrates in gelatinized cellulose generated by trifluoroacetic acid.

Published in:

Biotechnology for Biofuels, 2017, v. 10, p. 1, doi. 10.1186/s13068-017-0999-2

By:

Shiga, Tânia M.;
Weihua Xiao;
Haibing Yang;
Ximing Zhang;
Olek, Anna T.;
Donohoe, Bryon S.;
Jiliang Liu;
Lee Makowski;
Tao Hou;
McCann, Maureen C.;
Carpita, Nicholas C.;
Mosier, Nathan S.

Publication type:

Article

Trinucleotide cassettes increase diversity of T7 phage-displayed peptide library.

Published in:

BMC Biotechnology, 2007, v. 7, p. 65, doi. 10.1186/1472-6750-7-65

By:

Krumpe, Lauren RH;
Schumacher, Kathryn M;
McMahon, James B;
Makowski, Lee;
Mori, Toshiyuki

Publication type:

Article