OpenURL Connection Search

Select item for more details and to access through your institution.

NeMO–AD, a new neuroscience multi‐omic visualization and analysis platform for Alzheimer's disease research.
Published in:
Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2021, v. 17, n. 3, p. 1, doi. 10.1002/alz.055686
By:
- Chrysostomou, Elena;
- McDaniel, Kennedy E;
- Prater, Katherine E;
- Casas, Brandon A;
- Song, Yang;
- Orvis, Joshua;
- Kancherla, Jayaram;
- Herb, Brian;
- Bravo, Hector C;
- Mahurkar, Anup A;
- White, Owen;
- Ament, Seth;
- Garden, Gwenn A;
- Hertzano, Ronna
Publication type:
Article
NeMO analytics‐AD: The neuroscience multi‐omic visualization and analysis platform, now extended to support Alzheimer's disease: Development of new models and analysis methods/novel assays and technologies.
Published in:
Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2020, v. 16, n. 11, p. 1, doi. 10.1002/alz.046097
By:
- Chrysostomou, Elena;
- Prater, Katherine E.;
- Song, Yang;
- Orvis, Joshua;
- Kancherla, Jayaram;
- Herb, Brian;
- Ament, Seth;
- Bravo, Hector C.;
- Mahurkar, Anup A.;
- White, Owen;
- Garden, Gwenn A.;
- Hertzano, Ronna
Publication type:
Article
The miRNA Expression Profile of Experimental Autoimmune Encephalomyelitis Reveals Novel Potential Disease Biomarkers.
Published in:
International Journal of Molecular Sciences, 2018, v. 19, n. 12, p. 3990, doi. 10.3390/ijms19123990
By:
- Venkatesha, Shivaprasad H.;
- Dudics, Steven;
- Song, Yang;
- Mahurkar, Anup;
- Moudgil, Kamal D.
Publication type:
Article
CD34 defines melanocyte stem cell subpopulations with distinct regenerative properties.
Published in:
PLoS Genetics, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pgen.1008034
By:
- Joshi, Sandeep S.;
- Tandukar, Bishal;
- Pan, Li;
- Huang, Jennifer M.;
- Livak, Ferenc;
- Smith, Barbara J.;
- Hodges, Theresa;
- Mahurkar, Anup A.;
- Hornyak, Thomas J.
Publication type:
Article
Contextual in situ help for visual data interfaces.
Published in:
Information Visualization, 2023, v. 22, n. 1, p. 69, doi. 10.1177/14738716221120064
By:
- Chundury, Pramod;
- Yalçin, Mehmet Adil;
- Crabtree, Jonathan;
- Mahurkar, Anup;
- Shulman, Lisa M;
- Elmqvist, Niklas
Publication type:
Article
Advancing discovery in hearing research via biologist-friendly access to multi-omic data.
Published in:
Human Genetics, 2022, v. 141, n. 3/4, p. 319, doi. 10.1007/s00439-022-02445-w
By:
- Hertzano, Ronna;
- Mahurkar, Anup
Publication type:
Article
Metaviz: interactive statistical and visual analysis of metagenomic data.
Published in:
Nucleic Acids Research, 2018, v. 46, n. 6, p. 2777, doi. 10.1093/nar/gky136
By:
- Wagner, Justin;
- Chelaru, Florin;
- Kancherla, Jayaram;
- Paulson, Joseph N;
- Zhang, Alexander;
- Felix, Victor;
- Mahurkar, Anup;
- Elmqvist, Niklas;
- Corrada Bravo, Héctor
Publication type:
Article
MetaRef: a pan-genomic database for comparative and community microbial genomics.
Published in:
Nucleic Acids Research, 2014, v. 42, n. D1, p. D617, doi. 10.1093/nar/gkt1078
By:
- Huang, Katherine;
- Brady, Arthur;
- Mahurkar, Anup;
- White, Owen;
- Gevers, Dirk;
- Huttenhower, Curtis;
- Segata, Nicola
Publication type:
Article
GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database.
Published in:
Nucleic Acids Research, 2010, v. 38, p. D754, doi. 10.1093/nar/gkp832
By:
- Schriml, Lynn M.;
- Arze, Cesar;
- Nadendla, Suvarna;
- Ganapathy, Anu;
- Felix, Victor;
- Mahurkar, Anup;
- Phillippy, Katherine;
- Gussman, Aaron;
- Angiuoli, Sam;
- Ghedin, Elodie;
- White, Owen;
- Hall, Neil
Publication type:
Article
Best practices on the differential expression analysis of multi-species RNA-seq.
Published in:
Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02337-8
By:
- Chung, Matthew;
- Bruno, Vincent M.;
- Rasko, David A.;
- Cuomo, Christina A.;
- Muñoz, José F.;
- Livny, Jonathan;
- Shetty, Amol C.;
- Mahurkar, Anup;
- Dunning Hotopp, Julie C.
Publication type:
Article
Simultaneous Transcriptional Profiling of Bacteria and Their Host Cells.
Published in:
PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0080597
By:
- Humphrys, Michael S.;
- Creasy, Todd;
- Sun, Yezhou;
- Shetty, Amol C.;
- Chibucos, Marcus C.;
- Drabek, Elliott F.;
- Fraser, Claire M.;
- Farooq, Umar;
- Sengamalay, Naomi;
- Ott, Sandy;
- Shou, Huizhong;
- Bavoil, Patrik M.;
- Mahurkar, Anup;
- Myers, Garry S. A.
Publication type:
Article
Peripheral blood transcriptomic profiling of molecular mechanisms commonly regulated by binge drinking and placebo effects.
Published in:
Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-56900-x
By:
- Shetty, Amol Carl;
- Sivinski, John;
- Cornell, Jessica;
- McCracken, Carrie;
- Sadzewicz, Lisa;
- Mahurkar, Anup;
- Wang, Xing-Qun;
- Colloca, Luana;
- Lin, Weihong;
- Pilli, Nageswara;
- Kane, Maureen A.;
- Seneviratne, Chamindi
Publication type:
Article
IDEA: Interactive Display for Evolutionary Analyses.
Published in:
BMC Bioinformatics, 2008, v. 9, n. 1, p. 1, doi. 10.1186/1471-2105-9-524
By:
- Simons, Rain;
- Mahurkar, Anup;
- Crabtree, Jonathan;
- Badger, Jonathan H;
- Carlton, Jane M;
- Silva, Joana C
Publication type:
Article
Bioinformatic analysis of bacteria and host cell dual RNA-sequencing experiments.
Published in:
Briefings in Bioinformatics, 2018, v. 19, n. 6, p. 1115, doi. 10.1093/bib/bbx043
By:
- Marsh, James W;
- Hayward, Regan J;
- Shetty, Amol C;
- Mahurkar, Anup;
- Humphrys, Michael S;
- Myers, Garry S A
Publication type:
Article
MNKs act as a regulatory switch for eIF4E1 and eIF4E3 driven mRNA translation in DLBCL.
Published in:
Nature Communications, 2014, v. 5, n. 11, p. 5413, doi. 10.1038/ncomms6413
By:
- Landon, Ari L.;
- Muniandy, Parameswary A.;
- Shetty, Amol C.;
- Lehrmann, Elin;
- Volpon, Laurent;
- Houng, Simone;
- Zhang, Yongqing;
- Dai, Bojie;
- Peroutka, Raymond;
- Mazan-Mamczarz, Krystyna;
- Steinhardt, James;
- Mahurkar, Anup;
- Becker, Kevin G.;
- Borden, Katherine L.;
- Gartenhaus, Ronald B.
Publication type:
Article
CloVR-Comparative: automated, cloud-enabled comparative microbial genome sequence analysis pipeline.
Published in:
BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3717-3
By:
- Agrawal, Sonia;
- Arze, Cesar;
- Adkins, Ricky S.;
- Crabtree, Jonathan;
- Riley, David;
- Vangala, Mahesh;
- Galens, Kevin;
- Fraser, Claire M.;
- Tettelin, Hervé;
- White, Owen;
- Angiuoli, Samuel V.;
- Mahurkar, Anup;
- Fricke, W. Florian
Publication type:
Article
Brain feminization requires active repression of masculinization via DNA methylation.
Published in:
Nature Neuroscience, 2015, v. 18, n. 5, p. 690, doi. 10.1038/nn.3988
By:
- Nugent, Bridget M;
- Wright, Christopher L;
- Shetty, Amol C;
- Hodes, Georgia E;
- Lenz, Kathryn M;
- Mahurkar, Anup;
- Russo, Scott J;
- Devine, Scott E;
- McCarthy, Margaret M
Publication type:
Article
MAMS: matrix and analysis metadata standards to facilitate harmonization and reproducibility of single-cell data.
Published in:
Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03349-w
By:
- Sarfraz, Irzam;
- Wang, Yichen;
- Shastry, Amulya;
- Teh, Wei Kheng;
- Sokolov, Artem;
- Herb, Brian R.;
- Creasy, Heather H.;
- Virshup, Isaac;
- Dries, Ruben;
- Degatano, Kylee;
- Mahurkar, Anup;
- Schnell, Daniel J.;
- Madrigal, Pedro;
- Hilton, Jason;
- Gehlenborg, Nils;
- Tickle, Timothy;
- Campbell, Joshua D.
Publication type:
Article
A comparative analysis of library prep approaches for sequencing low input translatome samples.
Published in:
BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5066-2
By:
- Song, Yang;
- Milon, Beatrice;
- Ott, Sandra;
- Zhao, Xuechu;
- Sadzewicz, Lisa;
- Shetty, Amol;
- Boger, Erich T.;
- Tallon, Luke J.;
- Morell, Robert J.;
- Mahurkar, Anup;
- Hertzano, Ronna
Publication type:
Article
RNA-Seq analysis of isolate- and growth phase-specific differences in the global transcriptomes of enteropathogenic Escherichia coli prototype isolates.
Published in:
Frontiers in Microbiology, 2015, p. 1, doi. 10.3389/fmicb.2015.00569
By:
- Hazen, Tracy H.;
- Daugherty, Sean C.;
- Shetty, Amol;
- Mahurkar, Anup A.;
- White, Owen;
- Kaper, James B.;
- Rasko, David A.
Publication type:
Article
Whole blood transcriptomic profiles can differentiate vulnerability to chronic low back pain.
Published in:
PLoS ONE, 2019, v. 14, n. 5, p. 1, doi. 10.1371/journal.pone.0216539
By:
- Dorsey, Susan G.;
- Renn, Cynthia L.;
- Griffioen, Mari;
- Lassiter, Cameron B.;
- Zhu, Shijun;
- Huot-Creasy, Heather;
- McCracken, Carrie;
- Mahurkar, Anup;
- Shetty, Amol C.;
- Jackson-Cook, Colleen K.;
- Kim, Hyungsuk;
- Henderson, Wendy A.;
- Saligan, Leorey;
- Gill, Jessica;
- Colloca, Luana;
- Lyon, Debra E.;
- Starkweather, Angela R.
Publication type:
Article
Reprogramming Chromosome Ends by Functional Histone Acetylation.
Published in:
International Journal of Molecular Sciences, 2024, v. 25, n. 7, p. 3898, doi. 10.3390/ijms25073898
By:
- Meltzer, W. Alex;
- Gupta, Aditi;
- Lin, Phyo Nay;
- Brown, Robert A.;
- Benyamien-Roufaeil, Daniel S.;
- Khatri, Raju;
- Mahurkar, Anup A.;
- Song, Yang;
- Taylor, Rodney J.;
- Zalzman, Michal
Publication type:
Article
Map of open and closed chromatin domains in Drosophila genome.
Published in:
BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-988
By:
- Milon, Beatrice;
- Yezhou Sun;
- Weizhong Chang;
- Creasy, Todd;
- Mahurkar, Anup;
- Shetty, Amol;
- Nurminsky, Dmitry;
- Nurminskaya, Maria
Publication type:
Article
Circleator: flexible circular visualization of genome-associated data with BioPerl and SVG.
Published in:
Bioinformatics, 2014, v. 30, n. 21, p. 3125, doi. 10.1093/bioinformatics/btu505
By:
- Crabtree, Jonathan;
- Agrawal, Sonia;
- Mahurkar, Anup;
- Myers, Garry S.;
- Rasko, David A.;
- White, Owen
Publication type:
Article
Ergatis: a web interface and scalable software system for bioinformatics workflows.
Published in:
Bioinformatics, 2010, v. 26, n. 12, p. 1488, doi. 10.1093/bioinformatics/btq167
By:
- Orvis, Joshua;
- Crabtree, Jonathan;
- Galens, Kevin;
- Gussman, Aaron;
- Inman, Jason M.;
- Lee, Eduardo;
- Nampally, Sreenath;
- Riley, David;
- Sundaram, Jaideep P.;
- Felix, Victor;
- Whitty, Brett;
- Mahurkar, Anup;
- Wortman, Jennifer;
- White, Owen;
- Angiuoli, Samuel V.
Publication type:
Article
Additional Cover.
Published in:
Aging Cell, 2024, v. 23, n. 9, p. 1, doi. 10.1111/acel.14347
By:
- Badal, Kerriann K.;
- Sadhu, Abhishek;
- Raveendra, Bindu L.;
- McCracken, Carrie;
- Lozano‐Villada, Sebastian;
- Shetty, Amol C.;
- Gillette, Phillip;
- Zhao, Yibo;
- Stommes, Dustin;
- Fieber, Lynne A.;
- Schmale, Michael C.;
- Mahurkar, Anup;
- Hawkins, Robert D.;
- Puthanveettil, Sathyanarayanan V.
Publication type:
Article
Single‐neuron analysis of aging‐associated changes in learning reveals impairments in transcriptional plasticity.
Published in:
Aging Cell, 2024, v. 23, n. 9, p. 1, doi. 10.1111/acel.14228
By:
- Badal, Kerriann K.;
- Sadhu, Abhishek;
- Raveendra, Bindu L.;
- McCracken, Carrie;
- Lozano‐Villada, Sebastian;
- Shetty, Amol C.;
- Gillette, Phillip;
- Zhao, Yibo;
- Stommes, Dustin;
- Fieber, Lynne A.;
- Schmale, Michael C.;
- Mahurkar, Anup;
- Hawkins, Robert D.;
- Puthanveettil, Sathyanarayanan V.
Publication type:
Article
Microtubules Underlie Dysfunction in Duchenne Muscular Dystrophy.
Published in:
Science Signaling, 2012, v. 5, n. 236, p. 1, doi. 10.1126/scisignal.2002829
By:
- Khairallah, Ramzi J.;
- Guoli Shi;
- Sbrana, Francesca;
- Prosser, Benjamin L.;
- Borroto, Carlos;
- Mazaitis, Mark J.;
- Hoffman, Eric P.;
- Mahurkar, Anup;
- Sachs, Fredrick;
- Yezhou Sun;
- Yi-Wen Chen;
- Raiteri, Roberto;
- Lederer, W. Jonathan;
- Dorsey, Susan G.;
- Ward, Christopher W.
Publication type:
Article

Found: 28