Works by Mahé, Frédéric

Results: 35

Identifying Potential Hosts of Short-Branch Microsporidia.

Published in:

Microbial Ecology, 2021, v. 82, n. 2, p. 549, doi. 10.1007/s00248-020-01657-9

By:

Doliwa, Annemie;
Dunthorn, Micah;
Rassoshanska, Erika;
Mahé, Frédéric;
Bass, David;
Duarte Ritter, Camila

Publication type:

Article

Heterogeneity of the rice microbial community of the Chinese centuries‐old Honghe Hani rice terraces system.

Published in:

Environmental Microbiology, 2020, v. 22, n. 8, p. 3429, doi. 10.1111/1462-2920.15114

By:

Alonso, Pascal;
Blondin, Laurence;
Gladieux, Pierre;
Mahé, Frédéric;
Sanguin, Hervé;
Ferdinand, Romain;
Filloux, Denis;
Desmarais, Eric;
Cerqueira, Frédérique;
Jin, Baihui;
Huang, Huichuan;
He, Xiahong;
Morel, Jean‐Benoit;
Martin, Darren P.;
Roumagnac, Philippe;
Vernière, Christian

Publication type:

Article

Deep sequencing uncovers protistan plankton diversity in the Portuguese Ria Formosa solar saltern ponds.

Published in:

Extremophiles, 2015, v. 19, n. 2, p. 283, doi. 10.1007/s00792-014-0713-2

By:

Filker, Sabine;
Gimmler, Anna;
Dunthorn, Micah;
Mahé, Frédéric;
Stoeck, Thorsten

Publication type:

Article

Intracellular Diversity of the V4 and V9 Regions of the 18S rRNA in Marine Protists (Radiolarians) Assessed by High-Throughput Sequencing.

Published in:

PLoS ONE, 2014, v. 9, n. 8, p. 1, doi. 10.1371/journal.pone.0104297

By:

Decelle, Johan;
Romac, Sarah;
Sasaki, Eriko;
Not, Fabrice;
Mahé, Frédéric

Publication type:

Article

Diversity, Ecology and Biogeochemistry of Cyst-Forming Acantharia (Radiolaria) in the Oceans.

Published in:

PLoS ONE, 2013, v. 8, n. 1, p. 1, doi. 10.1371/journal.pone.0053598

By:

Decelle, Johan;
Martin, Patrick;
Paborstava, Katsiaryna;
Pond, David W.;
Tarling, Geraint;
Mahé, Frédéric;
de Vargas, Colomban;
Lampitt, Richard;
Not, Fabrice

Publication type:

Article

Fruit fly phylogeny imprints bacterial gut microbiota.

Published in:

Evolutionary Applications, 2022, v. 15, n. 10, p. 1621, doi. 10.1111/eva.13352

By:

Ravigné, Virginie;
Becker, Nathalie;
Massol, François;
Guichoux, Erwan;
Boury, Christophe;
Mahé, Frédéric;
Facon, Benoit

Publication type:

Article

Global patterns of pelagic dinoflagellate diversity across protist size classes unveiled by metabarcoding.

Published in:

Environmental Microbiology, 2016, v. 18, n. 2, p. 609, doi. 10.1111/1462-2920.13039

By:

Le Bescot, Noan;
Mahé, Frédéric;
Audic, Stéphane;
Dimier, Céline;
Garet, Marie ‐ José;
Poulain, Julie;
Wincker, Patrick;
Vargas, Colomban;
Siano, Raffaele

Publication type:

Article

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing.

Published in:

Environmental Microbiology, 2015, v. 17, n. 10, p. 4035, doi. 10.1111/1462-2920.12955

By:

Massana, Ramon;
Gobet, Angélique;
Audic, Stéphane;
Bass, David;
Bittner, Lucie;
Boutte, Christophe;
Chambouvet, Aurélie;
Christen, Richard;
Claverie, Jean ‐ Michel;
Decelle, Johan;
Dolan, John R.;
Dunthorn, Micah;
Edvardsen, Bente;
Forn, Irene;
Forster, Dominik;
Guillou, Laure;
Jaillon, Olivier;
Kooistra, Wiebe H. C. F.;
Logares, Ramiro;
Mahé, Frédéric

Publication type:

Article

Seasonal dynamics of marine protist communities in tidally mixed coastal waters.

Published in:

Molecular Ecology, 2022, v. 31, n. 14, p. 3761, doi. 10.1111/mec.16539

By:

Caracciolo, Mariarita;
Rigaut‐Jalabert, Fabienne;
Romac, Sarah;
Mahé, Frédéric;
Forsans, Samuel;
Gac, Jean‐Philippe;
Arsenieff, Laure;
Manno, Maxime;
Chaffron, Samuel;
Cariou, Thierry;
Hoebeke, Mark;
Bozec, Yann;
Goberville, Eric;
Le Gall, Florence;
Guilloux, Loïc;
Baudoux, Anne‐Claire;
de Vargas, Colomban;
Not, Fabrice;
Thiébaut, Eric;
Henry, Nicolas

Publication type:

Article

Consistent patterns of high alpha and low beta diversity in tropical parasitic and free‐living protists.

Published in:

Molecular Ecology, 2018, v. 27, n. 13, p. 2846, doi. 10.1111/mec.14731

By:

Lentendu, Guillaume;
Mahé, Frédéric;
Bass, David;
Rueckert, Sonja;
Stoeck, Thorsten;
Dunthorn, Micah

Publication type:

Article

Diversity and dynamics of relevant nanoplanktonic diatoms in the Western English Channel.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2020, v. 14, n. 8, p. 1966, doi. 10.1038/s41396-020-0659-6

By:

Arsenieff, Laure;
Le Gall, Florence;
Rigaut-Jalabert, Fabienne;
Mahé, Frédéric;
Sarno, Diana;
Gouhier, Léna;
Baudoux, Anne-Claire;
Simon, Nathalie

Publication type:

Article

Controlled sampling of ribosomally active protistan diversity in sediment-surface layers identifies putative players in the marine carbon sink.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2020, v. 14, n. 4, p. 984, doi. 10.1038/s41396-019-0581-y

By:

Rodríguez-Martínez, Raquel;
Leonard, Guy;
Milner, David S.;
Sudek, Sebastian;
Conway, Mike;
Moore, Karen;
Hudson, Theresa;
Mahé, Frédéric;
Keeling, Patrick J.;
Santoro, Alyson E.;
Worden, Alexandra Z.;
Richards, Thomas A.

Publication type:

Article

Vampires in the oceans: predatory cercozoan amoebae in marine habitats.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 12, p. 2387, doi. 10.1038/ismej.2013.116

By:

Berney, Cédric;
Romac, Sarah;
Mahé, Frédéric;
Santini, Sébastien;
Siano, Raffaele;
Bass, David

Publication type:

Article

Interpreting phylogenetic placements for taxonomic assignment of environmental DNA.

Published in:

Journal of Eukaryotic Microbiology, 2023, v. 70, n. 5, p. 1, doi. 10.1111/jeu.12990

By:

Ewers, Isabelle;
Rajter, Lubomír;
Czech, Lucas;
Mahé, Frédéric;
Stamatakis, Alexandros;
Dunthorn, Micah

Publication type:

Article

The Windblown: Possible Explanations for Dinophyte DNA in Forest Soils.

Published in:

Journal of Eukaryotic Microbiology, 2021, v. 68, n. 1, p. 1, doi. 10.1111/jeu.12833

By:

Gottschling, Marc;
Czech, Lucas;
Mahé, Frédéric;
Adl, Sina;
Dunthorn, Micah

Publication type:

Article

UniEuk: Time to Speak a Common Language in Protistology!

Published in:

Journal of Eukaryotic Microbiology, 2017, v. 64, n. 3, p. 407, doi. 10.1111/jeu.12414

By:

Berney, Cédric;
Ciuprina, Andreea;
Bender, Sara;
Brodie, Juliet;
Edgcomb, Virginia;
Kim, Eunsoo;
Rajan, Jeena;
Parfrey, Laura Wegener;
Adl, Sina;
Audic, Stéphane;
Bass, David;
Caron, David A.;
Cochrane, Guy;
Czech, Lucas;
Dunthorn, Micah;
Geisen, Stefan;
Glöckner, Frank Oliver;
Mahé, Frédéric;
Quast, Christian;
Kaye, Jonathan Z.

Publication type:

Article

Comparing High-throughput Platforms for Sequencing the V4 Region of SSU-r DNA in Environmental Microbial Eukaryotic Diversity Surveys.

Published in:

Journal of Eukaryotic Microbiology, 2015, v. 62, n. 3, p. 338, doi. 10.1111/jeu.12187

By:

Mahé, Frédéric;
Mayor, Jordan;
Bunge, John;
Chi, Jingyun;
Siemensmeyer, Tobias;
Stoeck, Thorsten;
Wahl, Benjamin;
Paprotka, Tobias;
Filker, Sabine;
Dunthorn, Micah

Publication type:

Article

Ciliates and the Rare Biosphere: A Review.

Published in:

Journal of Eukaryotic Microbiology, 2014, v. 61, n. 4, p. 404, doi. 10.1111/jeu.12121

By:

Dunthorn, Micah;
Stoeck, Thorsten;
Clamp, John;
Warren, Alan;
Mahé, Frédéric

Publication type:

Article

Temporal recovery of soil biological activity and diversity after 915-MHz microwave treatments.

Published in:

Biology & Fertility of Soils, 2021, v. 57, n. 5, p. 603, doi. 10.1007/s00374-021-01553-5

By:

Maynaud, Géraldine;
Baudoin, Ezékiel;
Mahé, Frédéric;
Villenave, Cécile;
Cleyet-Marel, Jean-Claude;
Brunel, Brigitte

Publication type:

Article

Periodontitis associates with species-specific gene expression of the oral microbiota.

Published in:

NPJ Biofilms & Microbiomes, 2021, v. 7, n. 1, p. 1, doi. 10.1038/s41522-021-00247-y

By:

Belstrøm, Daniel;
Constancias, Florentin;
Drautz-Moses, Daniela I.;
Schuster, Stephan C.;
Veleba, Mark;
Mahé, Frédéric;
Givskov, Michael

Publication type:

Article

Habitat- and soil-related drivers of the root-associated fungal community of Quercus suber in the Northern Moroccan forest.

Published in:

PLoS ONE, 2017, v. 12, n. 11, p. 1, doi. 10.1371/journal.pone.0187758

By:

Maghnia, Fatima Zahra;
Abbas, Younes;
Mahé, Frédéric;
Kerdouh, Benaissa;
Tournier, Estelle;
Ouadji, Mohamed;
Tisseyre, Pierre;
Prin, Yves;
El Ghachtouli, Naïma;
Bakkali Yakhlef, Salah Eddine;
Duponnois, Robin;
Sanguin, Hervé

Publication type:

Article

Predicting global distributions of eukaryotic plankton communities from satellite data.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00308-7

By:

Kaneko, Hiroto;
Endo, Hisashi;
Henry, Nicolas;
Berney, Cédric;
Mahé, Frédéric;
Poulain, Julie;
Labadie, Karine;
Beluche, Odette;
El Hourany, Roy;
Tara Oceans Coordinators;
Acinas, Silvia G.;
Babin, Marcel;
Bork, Peer;
Bowler, Chris;
Cochrane, Guy;
de Vargas, Colomban;
Gorsky, Gabriel;
Guidi, Lionel;
Grimsley, Nigel;
Hingamp, Pascal

Publication type:

Article

Meiotic Genes in Colpodean Ciliates Support Secretive Sexuality.

Published in:

Genome Biology & Evolution, 2017, v. 9, n. 6, p. 1781, doi. 10.1093/gbe/evx125

By:

Dunthorn, Micah;
Zufall, Rebecca A.;
Jingyun Chi;
Paszkiewicz, Konrad;
Moore, Karen;
Mahé, Frédéric

Publication type:

Article

How deep can ectomycorrhizas go? A case study on Pisolithus down to 4 meters in a Brazilian eucalypt plantation.

Published in:

Mycorrhiza, 2019, v. 29, n. 6, p. 637, doi. 10.1007/s00572-019-00917-y

By:

Robin, Agnès;
Pradier, Céline;
Sanguin, Hervé;
Mahé, Frédéric;
Lambais, George Rodrigues;
de Araujo Pereira, Arthur Prudêncio;
Germon, Amandine;
Santana, Maiele Cintra;
Tisseyre, Pierre;
Pablo, Anne-Laure;
Heuillard, Pauline;
Sauvadet, Marie;
Bouillet, Jean-Pierre;
Andreote, Fernando Dini;
Plassard, Claude;
de Moraes Gonçalves, José Léonardo;
Cardoso, Elke Jurandy Bran Nogueira;
Laclau, Jean-Paul;
Hinsinger, Philippe;
Jourdan, Christophe

Publication type:

Article

NanoASV: a snakemake workflow for reproducible field-based Nanopore full-length 16S metabarcoding amplicon data analysis.

Published in:

Bioinformatics, 2025, v. 41, n. 3, p. 1, doi. 10.1093/bioinformatics/btaf089

By:

Cousson, Arthur;
Mahé, Frédéric;
Guyet, Ulysse;
Razafimahafaly, Damase;
Bernard, Laetitia

Publication type:

Article

Swarm v3: towards tera-scale amplicon clustering.

Published in:

Bioinformatics, 2022, v. 38, n. 1, p. 267, doi. 10.1093/bioinformatics/btab493

By:

Mahé, Frédéric;
Czech, Lucas;
Stamatakis, Alexandros;
Quince, Christopher;
Vargas, Colomban de;
Dunthorn, Micah;
Rognes, Torbjørn

Publication type:

Article

metaXplor: an interactive viral and microbial metagenomic data manager.

Published in:

GigaScience, 2021, v. 10, n. 2, p. 1, doi. 10.1093/gigascience/giab001

By:

Sempéré, Guilhem;
Pétel, Adrien;
Abbé, Magsen;
Lefeuvre, Pierre;
Roumagnac, Philippe;
Mahé, Frédéric;
Baurens, Gaël;
Filloux, Denis

Publication type:

Article

PFR<sup>2</sup>: a curated database of planktonic foraminifera 18S ribosomal DNA as a resource for studies of plankton ecology, biogeography and evolution.

Published in:

Molecular Ecology Resources, 2015, v. 15, n. 6, p. 1472, doi. 10.1111/1755-0998.12410

By:

Morard, Raphaël;
Darling, Kate F.;
Mahé, Frédéric;
Audic, Stéphane;
Ujiié, Yurika;
Weiner, Agnes K. M.;
André, Aurore;
Seears, Heidi A.;
Wade, Christopher M.;
Quillévéré, Frédéric;
Douady, Christophe J.;
Escarguel, Gilles;
Garidel‐Thoron, Thibault;
Siccha, Michael;
Kucera, Michal;
Vargas, Colomban

Publication type:

Article

Placing Environmental Next-Generation Sequencing Amplicons from Microbial Eukaryotes into a Phylogenetic Context.

Published in:

Molecular Biology & Evolution, 2014, v. 31, n. 4, p. 993, doi. 10.1093/molbev/msu055

By:

Dunthorn, Micah;
Otto, Johannes;
Berger, Simon A.;
Stamatakis, Alexandros;
Mahé, Frédéric;
Romac, Sarah;
de Vargas, Colomban;
Audic, Stéphane;
Consortium, BioMarKs;
Stock, Alexandra;
Kauff, Frank;
Stoeck, Thorsten

Publication type:

Article

Meiosis Gene Inventory of Four Ciliates Reveals the Prevalence of a Synaptonemal Complex-Independent Crossover Pathway.

Published in:

Molecular Biology & Evolution, 2014, v. 31, n. 3, p. 660, doi. 10.1093/molbev/mst258

By:

Chi, Jingyun;
Mahé, Frédéric;
Loidl, Josef;
Logsdon, John;
Dunthorn, Micah

Publication type:

Article

High and specific diversity of protists in the deep-sea basins dominated by diplonemids, kinetoplastids, ciliates and foraminiferans.

Published in:

Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02012-5

By:

Schoenle, Alexandra;
Hohlfeld, Manon;
Hermanns, Karoline;
Mahé, Frédéric;
de Vargas, Colomban;
Nitsche, Frank;
Arndt, Hartmut

Publication type:

Article

Pan-Arctic plankton community structure and its global connectivity.

Published in:

Elementa: Science of the Anthropocene, 2023, v. 11, n. 1, p. 1, doi. 10.1525/elementa.2022.00060

By:

Ibarbalz, Federico M.;
Henry, Nicolas;
Mahé, Frédéric;
Ardyna, Mathieu;
Zingone, Adriana;
Scalco, Eleonora;
Lovejoy, Connie;
Lombard, Fabien;
Jaillon, Olivier;
Iudicone, Daniele;
Malviya, Shruti;
Sullivan, Matthew B.;
Chaffron, Samuel;
Karsenti, Eric;
Babin, Marcel;
Boss, Emmanuel;
Wincker, Patrick;
Zinger, Lucie;
de Vargas, Colomban;
Bowler, Chris

Publication type:

Article

The Protist Ribosomal Reference database (PR<sup>2</sup>): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy.

Published in:

Nucleic Acids Research, 2013, v. 41, p. D597, doi. 10.1093/nar/gks1160

By:

Guillou, Laure;
Bachar, Dipankar;
Audic, Stéphane;
Bass, David;
Berney, Cédric;
Bittner, Lucie;
Boutte, Christophe;
Burgaud, Gaétan;
de Vargas, Colomban;
Decelle, Johan;
del Campo, Javier;
Dolan, John R.;
Dunthorn, Micah;
Edvardsen, Bente;
Holzmann, Maria;
Kooistra, Wiebe H. C. F.;
Lara, Enrique;
Le Bescot, Noan;
Logares, Ramiro;
Mahé, Frédéric

Publication type:

Article

pr2‐primers: An 18S rRNA primer database for protists.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 1, p. 168, doi. 10.1111/1755-0998.13465

By:

Vaulot, Daniel;
Geisen, Stefan;
Mahé, Frédéric;
Bass, David

Publication type:

Article

Yeasts dominate soil fungal communities in three lowland Neotropical rainforests.

Published in:

Environmental Microbiology Reports, 2017, v. 9, n. 5, p. 668, doi. 10.1111/1758-2229.12575

By:

Dunthorn, Micah;
Kauserud, Håvard;
Bass, David;
Mayor, Jordan;
Mahé, Frédéric

Publication type:

Article