Found: 33

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  • Database resources of the National Center for Biotechnology Information.

    Published in:
    Nucleic Acids Research, 2019, v. 47, n. D1, p. D23, doi. 10.1093/nar/gky1069
    By:
    • Sayers, Eric W;
    • Agarwala, Richa;
    • Bolton, Evan E;
    • Brister, J Rodney;
    • Canese, Kathi;
    • Clark, Karen;
    • Connor, Ryan;
    • Fiorini, Nicolas;
    • Funk, Kathryn;
    • Hefferon, Timothy;
    • Holmes, J Bradley;
    • Kim, Sunghwan;
    • Kimchi, Avi;
    • Kitts, Paul A;
    • Lathrop, Stacy;
    • Lu, Zhiyong;
    • Madden, Thomas L;
    • Marchler-Bauer, Aron;
    • Phan, Lon;
    • Schneider, Valerie A
    Publication type:
    Article

  • IgBLAST: an immunoglobulin variable domain sequence analysis tool.

    Published in:
    Nucleic Acids Research, 2013, v. 41, p. W34, doi. 10.1093/nar/gkt382
    By:
    • Jian Ye;
    • Ning Ma;
    • Madden, Thomas L.;
    • Ostell, James M.
    Publication type:
    Article

  • BLAST: a more efficient report with usability improvements.

    Published in:
    Nucleic Acids Research, 2013, v. 41, p. W29, doi. 10.1093/nar/gkt282
    By:
    • Boratyn, Grzegorz M.;
    • Camacho, Christiam;
    • Cooper, Peter S.;
    • Coulouris, George;
    • Fong, Amelia;
    • Ning Ma;
    • Madden, Thomas L.;
    • Matten, Wayne T.;
    • McGinnis, Scott D.;
    • Merezhuk, Yuri;
    • Raytselis, Yan;
    • Sayers, Eric W.;
    • Tao Tao;
    • Jian Ye;
    • Zaretskaya, Irena
    Publication type:
    Article

  • Database resources of the National Center for Biotechnology Information.

    Published in:
    Nucleic Acids Research, 2012, p. D13, doi. 10.1093/nar/gkr1184
    By:
    • Sayers, Eric W.;
    • Barrett, Tanya;
    • Benson, Dennis A.;
    • Bolton, Evan;
    • Bryant, Stephen H.;
    • Canese, Kathi;
    • Chetvernin, Vyacheslav;
    • Church, Deanna M.;
    • DiCuccio, Michael;
    • Federhen, Scott;
    • Feolo, Michael;
    • Fingerman, Ian M.;
    • Geer, Lewis Y.;
    • Helmberg, Wolfgang;
    • Kapustin, Yuri;
    • Krasnov, Sergey;
    • Landsman, David;
    • Lipman, David J.;
    • Lu, Zhiyong;
    • Madden, Thomas L.
    Publication type:
    Article

  • Database resources of the National Center for Biotechnology Information.

    Published in:
    Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D38, doi. 10.1093/nar/gkq1172
    By:
    • Sayers, Eric W.;
    • Barrett, Tanya;
    • Benson, Dennis A.;
    • Bolton, Evan;
    • Bryant, Stephen H.;
    • Canese, Kathi;
    • Chetvernin, Vyacheslav;
    • Church, Deanna M.;
    • DiCuccio, Michael;
    • Federhen, Scott;
    • Feolo, Michael;
    • Fingerman, Ian M.;
    • Geer, Lewis Y.;
    • Helmberg, Wolfgang;
    • Kapustin, Yuri;
    • Landsman, David;
    • Lipman, David J.;
    • Lu, Zhiyong;
    • Madden, Thomas L.;
    • Madej, Tom
    Publication type:
    Article

  • Database resources of the National Center for Biotechnology Information.

    Published in:
    Nucleic Acids Research, 2009, v. 37, n. 9, p. 3124, doi. 10.1093/nar/gkp382
    By:
    • Sayers, Eric W.;
    • Barrett, Tanya;
    • Benson, Dennis A.;
    • Bryant, Stephen H.;
    • Canese, Kathi;
    • Chetvernin, Vyacheslav;
    • Church, Deanna M.;
    • DiCuccio, Michael;
    • Edgar, Ron;
    • Federhen, Scott;
    • Feolo, Michael;
    • Geer, Lewis Y.;
    • Helmberg, Wolfgang;
    • Kapustin, Yuri;
    • Landsman, David;
    • Lipman, David J.;
    • Madden, Thomas L.;
    • Maglott, Donna R.;
    • Miller, Vadim;
    • Mizrachi, Ilene
    Publication type:
    Article

  • Database resources of the National Center for Biotechnology Information.

    Published in:
    Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D5, doi. 10.1093/nar/gkn741
    By:
    • Sayers, Eric W.;
    • Barrett, Tanya;
    • Benson, Dennis A.;
    • Bryant, Stephen H.;
    • Canese, Kathi;
    • Chetvernin, Vyacheslav;
    • Church, Deanna M.;
    • DiCuccio, Michael;
    • Edgar, Ron;
    • Federhen, Scott;
    • Feolo, Michael;
    • Geer, Lewis Y.;
    • Helmberg, Wolfgang;
    • Kapustin, Yuri;
    • Landsman, David;
    • Lipman, David J.;
    • Madden, Thomas L.;
    • Maglott, Donna R.;
    • Miller, Vadim;
    • Mizrachi, Ilene
    Publication type:
    Article

  • NCBI BLAST: a better web interface.

    Published in:
    Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W5, doi. 10.1093/nar/gkn201
    By:
    • Johnson, Mark;
    • Zaretskaya, Irena;
    • Raytselis, Yan;
    • Merezhuk, Yuri;
    • McGinnis, Scott;
    • Madden, Thomas L.
    Publication type:
    Article

  • Database resources of the National Center for Biotechnology Information.

    Published in:
    Nucleic Acids Research, 2008, v. 36, p. D13
    By:
    • Wheeler, David L.;
    • Barrett, Tanya;
    • Benson, Dennis A.;
    • Bryant, Stephen H.;
    • Canese, Kathi;
    • Chetvernin, Vyacheslav;
    • Church, Deanna M.;
    • DiCuccio, Michael;
    • Edgar, Ron;
    • Federhen, Scott;
    • Feolo, Michael;
    • Geer, Lewis Y.;
    • Helmberg, Wolfgang;
    • Kapustin, Yuri;
    • Khovayko, Oleg;
    • Landsman, David;
    • Lipman, David J.;
    • Madden, Thomas L.;
    • Maglott, Donna R.;
    • Miller, Vadim
    Publication type:
    Article

  • Database resources of the National Center for Biotechnology Information.

    Published in:
    Nucleic Acids Research, 2007, v. 35, p. d5, doi. 10.1093/nar/gkl1031
    By:
    • Wheeler, David L.;
    • Barrett, Tanya;
    • Benson, Dennis A.;
    • Bryant, Stephen H.;
    • Canese, Kathi;
    • Chetvernin, Vyacheslav;
    • Church, Deanna M.;
    • DiCuccio, Michael;
    • Edgar, Ron;
    • Federhen, Scott;
    • Geer, Lewis Y.;
    • Kapustin, Yuri;
    • Khovayko, Oleg;
    • Landsman, David;
    • Lipman, David J.;
    • Madden, Thomas L.;
    • Maglott, Donna R.;
    • Ostell, James;
    • Miller, Vadim;
    • Pruitt, Kim D.
    Publication type:
    Article

  • Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction.

    Published in:
    BMC Bioinformatics, 2012, v. 13, n. 1, p. 134, doi. 10.1186/1471-2105-13-134
    By:
    • Jian Ye;
    • Coulouris, George;
    • Zaretskaya, Irena;
    • Cutcutache, Ioana;
    • Rozen, Steve;
    • Madden, Thomas L.
    Publication type:
    Article

  • BLAST: improvements for better sequence analysis.

    Published in:
    Nucleic Acids Research, 2006, v. 34, n. 11, p. w6
    By:
    • Ye, Jian;
    • McGinnis, Scott;
    • Madden, Thomas L.
    Publication type:
    Article

  • Database resources of the National Center for Biotechnology Information.

    Published in:
    Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d173, doi. 10.1093/nar/gkj158
    By:
    • Wheeler, David L.;
    • Barrett, Tanya;
    • Benson, Dennis A.;
    • Bryant, Stephen H.;
    • Canese, Kathi;
    • Chetvernin, Vyacheslav;
    • Church, Deanna M.;
    • DiCuccio, Michael;
    • Edgar, Ron;
    • Federhen, Scott;
    • Geer, Lewis Y.;
    • Helmberg, Wolfgang;
    • Kapustin, Yuri;
    • Kenton, David L.;
    • Khovayko, Oleg;
    • Lipman, David J.;
    • Madden, Thomas L.;
    • Maglott, Donna R.;
    • Ostell, James;
    • Pruitt, Kim D.
    Publication type:
    Article

  • Database resources of the National Center for Biotechnology Information.

    Published in:
    Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d39
    By:
    • Wheeler, David L.;
    • Barrett, Tanya;
    • Benson, Dennis A.;
    • Bryant, Stephen H.;
    • Canese, Kathi;
    • Church, Deanna M.;
    • DiCuccio, Michael;
    • Edgar, Ron;
    • Federhen, Scott;
    • Helmberg, Wolfgang;
    • Kenton, David L.;
    • Khovayko, Oleg;
    • Lipman, David J.;
    • Madden, Thomas L.;
    • Maglott, Donna R.;
    • Ostell, James;
    • Pontius, Joan U.;
    • Pruitt, Kim D.;
    • Schuler, Gregory D.;
    • Schriml, Lynn M.
    Publication type:
    Article

  • BLAST: at the core of a powerful and diverse set of sequence analysis tools.

    Published in:
    Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w20, doi. 10.1093/nar/gkh435
    By:
    • McGinnis, Scott;
    • Madden, Thomas L.
    Publication type:
    Article

  • Database resources of the National Center for Biotechnology Information: update.

    Published in:
    Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d35
    By:
    • Wheeler, David L.;
    • Church, Deanna M.;
    • Edgar, Ron;
    • Federhen, Scott;
    • Helmberg, Wolfgang;
    • Madden, Thomas L.;
    • Pontius, Joan U.;
    • Schuler, Gregory D.;
    • Schriml, Lynn M.;
    • Sequeira, Edwin;
    • Suzek, Tugba O.;
    • Tatusova, Tatiana A.;
    • Wagner, Lukas
    Publication type:
    Article

  • Database resources of the National Center for Biotechnology.

    Published in:
    Nucleic Acids Research, 2003, v. 31, n. 1, p. 28, doi. 10.1093/nar/gkg033
    By:
    • Wheeler, David L.;
    • Church, Deanna M.;
    • Federhen, Scott;
    • Lash, Alex E.;
    • Madden, Thomas L.;
    • Pontius, Joan U.;
    • Schuler, Gregory D.;
    • Schriml, Lynn M.;
    • Sequeira, Edwin;
    • Tatusova, Tatiana A.;
    • Wagner, Lukas
    Publication type:
    Article

  • Database resources of the National Center for Biotechnology Information: 2002 update.

    Published in:
    Nucleic Acids Research, 2002, v. 30, n. 1, p. 13, doi. 10.1093/nar/30.1.13
    By:
    • Wheeler, David L.;
    • Church, Deanna M.;
    • Lash, Alex E.;
    • Leipe, Detlef D.;
    • Madden, Thomas L.;
    • Pontius, Joan U.;
    • Schuler, Gregory D.;
    • Schriml, Lynn M.;
    • Tatusova, Tatiana A.;
    • Wagner, Lukas;
    • Rapp, Barbara A.
    Publication type:
    Article

  • Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements.

    Published in:
    Nucleic Acids Research, 2001, v. 29, n. 14, p. 2994, doi. 10.1093/nar/29.14.2994
    By:
    • Schäffer, Alejandro A.;
    • Aravind, L.;
    • Madden, Thomas L.;
    • Shavirin, Sergei;
    • Spouge, John L.;
    • Wolf, Yuri I.;
    • Koonin, Eugene V.;
    • Altschul, Stephen F.
    Publication type:
    Article

  • Database resources of the National Center for Biotechnology Information.

    Published in:
    Nucleic Acids Research, 2001, v. 29, n. 1, p. 11, doi. 10.1093/nar/29.1.11
    By:
    • Wheeler, David L.;
    • Church, Deanna M.;
    • Lash, Alex E.;
    • Leipe, Detlef D.;
    • Madden, Thomas L.;
    • Pontius, Joan U.;
    • Schuler, Gregory D.;
    • Schriml, Lynn M.;
    • Tatusova, Tatiana A.;
    • Wagner, Lukas;
    • Rapp, Barbara A.
    Publication type:
    Article

  • Database resources of the National Center for Biotechnology Information.

    Published in:
    Nucleic Acids Research, 2000, v. 28, n. 1, p. 10, doi. 10.1093/nar/28.1.10
    By:
    • Wheeler, David L.;
    • Chappey, Colombe;
    • Lash, Alex E.;
    • Leipe, Detlef D.;
    • Madden, Thomas L.;
    • Schuler, Gregory D.;
    • Tatusova, Tatiana A.;
    • Rapp, Barbara A.
    Publication type:
    Article

  • Protein sequence similarity searches using patterns as seeds.

    Published in:
    Nucleic Acids Research, 1998, v. 26, n. 17, p. 3986, doi. 10.1093/nar/26.17.3986
    By:
    • Zhang, Zheng;
    • Schäffer, Alejandro A.;
    • Miller, Webb;
    • Madden, Thomas L.;
    • Lipman, David J.;
    • Koonin, Eugene V.;
    • Altschul, Stephen F.
    Publication type:
    Article

  • New finite-size correction for local alignment score distributions.

    Published in:
    BMC Research Notes, 2012, v. 5, n. 1, p. 286, doi. 10.1186/1756-0500-5-286
    By:
    • Park, Yonil;
    • Sheetlin, Sergey;
    • Ma, Ning;
    • Madden, Thomas L.;
    • Spouge, John L.
    Publication type:
    Article

  • Magic-BLAST, an accurate RNA-seq aligner for long and short reads.

    Published in:
    BMC Bioinformatics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12859-019-2996-x
    By:
    • Boratyn, Grzegorz M.;
    • Thierry-Mieg, Jean;
    • Thierry-Mieg, Danielle;
    • Busby, Ben;
    • Madden, Thomas L.
    Publication type:
    Article

  • Database resources of the National Center for Biotechnology Information in 2023.

    Published in:
    Nucleic Acids Research, 2023, v. 51, n. D1, p. D29, doi. 10.1093/nar/gkac1032
    By:
    • Sayers, Eric W;
    • Bolton, Evan E;
    • Brister, J Rodney;
    • Canese, Kathi;
    • Chan, Jessica;
    • Comeau, Donald C;
    • Farrell, Catherine M;
    • Feldgarden, Michael;
    • Fine, Anna M;
    • Funk, Kathryn;
    • Hatcher, Eneida;
    • Kannan, Sivakumar;
    • Kelly, Christopher;
    • Kim, Sunghwan;
    • Klimke, William;
    • Landrum, Melissa J;
    • Lathrop, Stacy;
    • Lu, Zhiyong;
    • Madden, Thomas L;
    • Malheiro, Adriana
    Publication type:
    Article

  • Database resources of the National Center for Biotechnology Information.

    Published in:
    Nucleic Acids Research, 2021, v. 49, n. D1, p. D10, doi. 10.1093/nar/gkaa892
    By:
    • Sayers, Eric W;
    • Beck, Jeffrey;
    • Bolton, Evan E;
    • Bourexis, Devon;
    • Brister, James R;
    • Canese, Kathi;
    • Comeau, Donald C;
    • Funk, Kathryn;
    • Kim, Sunghwan;
    • Klimke, William;
    • Marchler-Bauer, Aron;
    • Landrum, Melissa;
    • Lathrop, Stacy;
    • Lu, Zhiyong;
    • Madden, Thomas L;
    • O'Leary, Nuala;
    • Phan, Lon;
    • Rangwala, Sanjida H;
    • Schneider, Valerie A;
    • Skripchenko, Yuri
    Publication type:
    Article

  • Database resources of the National Center for Biotechnology Information.

    Published in:
    Nucleic Acids Research, 2020, v. 48, n. D1, p. D9, doi. 10.1093/nar/gkz899
    By:
    • Sayers, Eric W;
    • Beck, Jeff;
    • Brister, J Rodney;
    • Bolton, Evan E;
    • Canese, Kathi;
    • Comeau, Donald C;
    • Funk, Kathryn;
    • Ketter, Anne;
    • Kim, Sunghwan;
    • Kimchi, Avi;
    • Kitts, Paul A;
    • Kuznetsov, Anatoliy;
    • Lathrop, Stacy;
    • Lu, Zhiyong;
    • McGarvey, Kelly;
    • Madden, Thomas L;
    • Murphy, Terence D;
    • O'Leary, Nuala;
    • Phan, Lon;
    • Schneider, Valerie A
    Publication type:
    Article

  • Domain enhanced lookup time accelerated BLAST.

    Published in:
    Biology Direct, 2012, v. 7, n. 1, p. 12, doi. 10.1186/1745-6150-7-12
    By:
    • Boratyn, Grzegorz M.;
    • Sch„ffer, Alejandro A.;
    • Agarwala, Richa;
    • Altschul, Stephen F.;
    • Lipman, David J.;
    • Madden, Thomas L.
    Publication type:
    Article

  • Accelerated learning: A `multisensory' textbook.

    Published in:
    Management Review, 1995, v. 84, n. 6, p. 3
    By:
    • Madden, Thomas L.
    Publication type:
    Article

  • ElasticBLAST: accelerating sequence search via cloud computing.

    Published in:
    BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05245-9
    By:
    • Camacho, Christiam;
    • Boratyn, Grzegorz M.;
    • Joukov, Victor;
    • Vera Alvarez, Roberto;
    • Madden, Thomas L.
    Publication type:
    Article

  • Reply to the paper: Misunderstood parameters of NCBI BLAST impacts the correctness of bioinformatics workflows.

    Published in:
    Bioinformatics, 2019, v. 35, n. 15, p. 2699, doi. 10.1093/bioinformatics/bty1026
    By:
    • Madden, Thomas L;
    • Busby, Ben;
    • Ye, Jian
    Publication type:
    Article

  • Database indexing for production MegaBLAST searches.

    Published in:
    Bioinformatics, 2008, v. 24, n. 24, p. 2942, doi. 10.1093/bioinformatics/btn554
    By:
    • Aleksandr Morgulis;
    • George Coulouris;
    • Yan Raytselis;
    • Thomas L. Madden;
    • Richa Agarwala;
    • Alejandro A. Schäffer
    Publication type:
    Article

  • Database indexing for production MegaBLAST searches.

    Published in:
    Bioinformatics, 2008, v. 24, n. 16, p. 1757, doi. 10.1093/bioinformatics/btn322
    By:
    • Aleksandr Morgulis;
    • George Coulouris;
    • Yan Raytselis;
    • Thomas L. Madden;
    • Richa Agarwala;
    • Alejandro A. Schäffer
    Publication type:
    Article