Works matching AU MacLean, Daniel

Results: 27

Application of 'next-generation' sequencing technologies to microbial genetics.

Published in:

Nature Reviews Microbiology, 2009, v. 7, n. 4, p. 287, doi. 10.1038/nrmicro2088

By:

MacLean, Daniel;
Jones, Jonathan D. G.;
Studholme, David J.

Publication type:

Article

The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 140, doi. 10.1093/bioinformatics/btu601

By:

Corpas, Manuel;
Jimenez, Rafael C.;
Bongcam-Rudloff, Erik;
Budd, Aidan;
Brazas, Michelle D.;
Fernandes, Pedro L.;
Gaeta, Bruno;
van Gelder, Celia;
Korpelainen, Eija;
Lewitter, Fran;
McGrath, Annette;
MacLean, Daniel;
Palagi, Patricia M.;
Rother, Kristian;
Taylor, Jan;
Via, Allegra;
Watson, Mick;
Schneider, Maria Victoria;
Attwood, Teresa K.

Publication type:

Article

SVGenes: a library for rendering genomic features in scalable vector graphic format.

Published in:

Bioinformatics, 2013, v. 29, n. 15, p. 1890, doi. 10.1093/bioinformatics/btt294

By:

Etherington, Graham J.;
MacLean, Daniel

Publication type:

Article

Gee Fu: a sequence version and web-services database tool for genomic assembly, genome feature and NGS data.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2754, doi. 10.1093/bioinformatics/btr442

By:

Ramirez-Gonzalez, Ricardo;
Caccamo, Mario;
MacLean, Daniel

Publication type:

Article

Effects of Ankle Position While Performing One- and Two-Leg Floor Bridging Exercises on Core and Lower Extremity Muscle Recruitment.

Published in:

Bioengineering (Basel), 2024, v. 11, n. 4, p. 356, doi. 10.3390/bioengineering11040356

By:

Escamilla, Rafael F.;
Thompson, Irwin S.;
Carinci, Joe;
MacLean, Daniel;
MacLean, Lisa;
Aguinaldo, Arnel L.

Publication type:

Article

Fractal initialization for high-quality mapping with self-organizing maps.

Published in:

Neural Computing & Applications, 2010, v. 19, n. 7, p. 953, doi. 10.1007/s00521-010-0413-5

By:

Valova, Iren;
Beaton, Derek;
Buer, Alexandre;
MacLean, Daniel

Publication type:

Article

Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp. tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-270

By:

Cantu, Dario;
Segovia, Vanesa;
MacLean, Daniel;
Bayles, Rosemary;
Xianming Chen;
Kamoun, Sophien;
Dubcovsky, Jorge;
Saunders, Diane G. O.;
Uauy, Cristobal

Publication type:

Article

A draft genome sequence and functional screen reveals the repertoire of type III secreted proteins of Pseudomonas syringae pathovar tabaci 11528.

Published in:

2009

By:

Studholme, David J.;
Ibanez, Selena Gimenez;
MacLean, Daniel;
Dangl, Jeffery L.;
Chang, Jeff H.;
Rathjen, John P.

Publication type:

Correction Notice

A draft genome sequence and functional screen reveals therepertoire of type III secreted proteins of Pseudomonas syringaepathovar tabaci 11528.

Published in:

BMC Genomics, 2009, v. 10, p. 395, doi. 10.1186/1471-2164-10-395

By:

Studholme, David J.;
Ibanez, Selena Gimenez;
MacLean, Daniel;
Dangl, Jeffery L.;
Chang, Jeff H.;
Rathjen, John P.

Publication type:

Article

Genome Analyses of an Aggressive and Invasive Lineage of the Irish Potato Famine Pathogen.

Published in:

PLoS Pathogens, 2012, v. 8, n. 10, p. 1, doi. 10.1371/journal.ppat.1002940

By:

Cooke, David E. L.;
Cano, Liliana M.;
Raffaele, Sylvain;
Bain, Ruairidh A.;
Cooke, Louise R.;
Etherington, Graham J.;
Deahl, Kenneth L.;
Farrer, Rhys A.;
Gilroy, Eleanor M.;
Goss, Erica M.;
Grünwald, Niklaus J.;
Hein, Ingo;
MacLean, Daniel;
McNicol, James W.;
Randall, Eva;
Oliva, Ricardo F.;
Pel, Mathieu A.;
Shaw, David S.;
Squires, Julie N.;
Taylor, Moray C.

Publication type:

Article

Portmahomack: Monastery of the Picts. Second Edition by Martin Carver.

Published in:

Scottish Archaeological Journal, 2017, v. 39, n. 1, p. 122, doi. 10.3366/saj.2017.0086

By:

MacLean, Daniel W.

Publication type:

Article

Coval: Improving Alignment Quality and Variant Calling Accuracy for Next-Generation Sequencing Data.

Published in:

PLoS ONE, 2013, v. 8, n. 10, p. 1, doi. 10.1371/journal.pone.0075402

By:

Kosugi, Shunichi;
Natsume, Satoshi;
Yoshida, Kentaro;
MacLean, Daniel;
Cano, Liliana;
Kamoun, Sophien;
Terauchi, Ryohei

Publication type:

Article

Identifying and Classifying Trait Linked Polymorphisms in Non-Reference Species by Walking Coloured de Bruijn Graphs.

Published in:

PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0060058

By:

Leggett, Richard M.;
Ramirez-Gonzalez, Ricardo H.;
Verweij, Walter;
Kawashima, Cintia G.;
Iqbal, Zamin;
Jones, Jonathan D. G.;
Caccamo, Mario;
MacLean, Daniel

Publication type:

Article

Evidence for Large Complex Networks of Plant Short Silencing RNAs.

Published in:

PLoS ONE, 2010, v. 5, n. 3, p. 1, doi. 10.1371/journal.pone.0009901

By:

MacLean, Daniel;
Elina, Nataliya;
Havecker, Ericka R.;
Heimstaedt, Susanne B.;
Studholme, David J.;
Baulcombe, David C.

Publication type:

Article

A Boolean Model of the Pseudomonas syringae hrp Regulon Predicts a Tightly Regulated System.

Published in:

PLoS ONE, 2010, v. 5, n. 2, p. 1, doi. 10.1371/journal.pone.0009101

By:

MacLean, Daniel;
Studholme, David J.

Publication type:

Article

Bio-samtools: Ruby bindings for SAMtools, a library for accessing BAM files containing high-throughput sequence alignments.

Published in:

Source Code for Biology & Medicine, 2012, v. 7, n. 1, p. 6, doi. 10.1186/1751-0473-7-6

By:

Ramirez-Gonzalez, Ricardo H.;
Bonnal, Raoul;
Caccamo, Mario;
MacLean, Daniel

Publication type:

Article

FAST Low-Energy Beamline Studies: Toward High-Peak 5D Brightness Beams for FAST-GREENS.

Published in:

Instruments (2410-390X), 2023, v. 7, n. 4, p. 42, doi. 10.3390/instruments7040042

By:

Cropp, Frederick;
Ruan, Jinhao;
Santucci, James;
MacLean, Daniel;
Lumpkin, Alex H.;
Hall, Christopher C.;
Edelen, Jonathan P.;
Murokh, Alex;
Broemmelsiek, Daniel;
Musumeci, Pietro

Publication type:

Article

Arabidopsis downy mildew effector HaRxL106 suppresses plant immunity by binding to RADICAL‐INDUCED CELL DEATH1.

Published in:

New Phytologist, 2018, v. 220, n. 1, p. 232, doi. 10.1111/nph.15277

By:

Asai, Shuta;
Rallapalli, Ghanasyam;
Sklenar, Jan;
Fabro, Georgina;
Kim, Dae Sung;
MacLean, Daniel;
Menke, Frank L. H.;
Jones, Jonathan D. G.;
Wirthmueller, Lennart;
Lintermann, Ruth;
Jaspers, Pinja;
Wrzaczek, Michael;
Kangasjärvi, Jaakko;
Banfield, Mark J.

Publication type:

Article

EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-341

By:

Rallapalli, Ghanasyam;
Kemen, Eric M.;
Robert-Seilaniantz, Alexandre;
Segonzac, Cécile;
Etherington, Graham;
Kee Hoon Sohn;
MacLean, Daniel;
Jones, Jonathan D. G.

Publication type:

Article

Preliminary Evaluation of Modified-Atmosphere Storage for Pumpkins.

Published in:

International Journal of Vegetable Science, 2012, v. 18, n. 1, p. 87, doi. 10.1080/19315260.2011.583978

By:

Boyhan, GeorgeE.;
MacLean, Daniel;
Bateman, AnthonyG.;
Tate, Suzzanne

Publication type:

Article

Microarray analysis of chromatin-immunoprecipitated DNA identifies specific regions of tobacco genes associated with acetylated histones.

Published in:

Plant Journal, 2004, v. 37, n. 6, p. 789, doi. 10.1111/j.1365-313X.2004.02007.x

By:

Chua, Vii Leng;
Mott, Ellie;
Brown, Anthony P. C.;
MacLean, Daniel;
Gray, John C.

Publication type:

Article

Finding sRNA generative locales fromhigh-throughput sequencing data with NiBLS.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 93, doi. 10.1186/1471-2105-11-93

By:

MacLean, Daniel;
Moulton, Vincent;
Studholme, David J.

Publication type:

Article

Rapid fine mapping of causative mutations from sets of unordered, contig-sized fragments of genome sequence.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-018-2515-5

By:

Rallapalli, Ghanasyam;
Corredor-Moreno, Pilar;
Chalstrey, Edward;
Page, Martin;
MacLean, Daniel

Publication type:

Article

Plant immune and growth receptors share common signalling components but localise to distinct plasma membrane nanodomains.

Published in:

eLife, 2017, p. 1, doi. 10.7554/eLife.25114

By:

Bücherl, Christoph A;
Jarsch, Iris K.;
Schudoma, Christian;
Segonzac, Cécile;
Mbengue, Malick;
Robatzek, Silke;
Maclean, Daniel;
Ott, Thomas;
Zipfel, Cyril

Publication type:

Article

PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update.

Published in:

Nucleic Acids Research, 2010, v. 38, p. D828, doi. 10.1093/nar/gkp810

By:

Durek, Pawel;
Schmidt, Robert;
Heazlewood, Joshua L.;
Jones, Alexandra;
MacLean, Daniel;
Nagel, Axel;
Kersten, Birgit;
Schulze, Waltraud X.

Publication type:

Article

A Putative Phosphatase, LSF1, Is Required for Normal Starch Turnover in Arabidopsis Leaves.

Published in:

Plant Physiology, 2010, v. 152, n. 2, p. 685, doi. 10.1104/pp.109.148981

By:

Comparot-Moss, Sylviane;
Kötting, Oliver;
Stettler, Michaela;
Edner, Christoph;
Graf, Alexander;
Weise, Sean E.;
Streb, Sebastian;
Wei-Ling Lue;
MacLean, Daniel;
Mahlow, Sebastian;
Ritte, Gerhard;
Steup, Martin;
Jychian Chen;
Zeeman, Samuel C.;
Smith, Alison M.

Publication type:

Article

Big data in small places.

Published in:

Nature Biotechnology, 2012, v. 30, n. 1, p. 33, doi. 10.1038/nbt.2079

By:

MacLean, Daniel;
Kamoun, Sophien

Publication type:

Article