Works by Mabee, Paula M.

Results: 30

Gill-arch musculature of the quillback carpiodes cyprinus (cypriniformes: catostomidae) with a comparison to cyprinids.

Published in:

Journal of Morphology, 2012, v. 273, n. 8, p. 909, doi. 10.1002/jmor.20030

By:

Grey, Ericka A.;
Mabee, Paula M.

Publication type:

Article

Segmentation and fusion on the midline: Basibranchial homologies in cypriniform fishes.

Published in:

Journal of Morphology, 2012, v. 273, n. 7, p. 725, doi. 10.1002/jmor.20017

By:

Engeman, Jeffrey M.;
Mabee, Paula M.

Publication type:

Article

Development of the paired fins in the paddlefish, Polyodon spathula.

Published in:

Journal of Morphology, 2004, v. 261, n. 3, p. 334, doi. 10.1002/jmor.10253

By:

Paula M. Mabee;
Michael Noordsy

Publication type:

Article

Gdf5 is expressed in the developing skeleton of median fins of late-stage zebrafish, Danio rerio.

Published in:

Development Genes & Evolution, 2001, v. 211, n. 11, p. 555, doi. 10.1007/s00427-001-0186-z

By:

Crotwell, Patricia L.;
Clark, Tim G.;
Mabee, Paula M.

Publication type:

Article

rphenoscate: An R package for semantics‐aware evolutionary analyses of anatomical traits.

Published in:

Methods in Ecology & Evolution, 2023, v. 14, n. 10, p. 2531, doi. 10.1111/2041-210X.14210

By:

Porto, Diego S.;
Tarasov, Sergei;
Charpentier, Caleb;
Lapp, Hilmar;
Balhoff, James P.;
Vision, Todd J.;
Dahdul, Wasila M.;
Mabee, Paula M.;
Uyeda, Josef

Publication type:

Article

The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 3, doi. 10.1186/2041-1480-4-34

By:

Midford, Peter E.;
Dececchi, Thomas Alex;
Balhoff, James P.;
Dahdul, Wasila M.;
Ibrahim, Nizar;
Lapp, Hilmar;
Lundberg, John G.;
Mabee, Paula M.;
Sereno, Paul C.;
Westerfield, Monte;
Vision, Todd J.;
Blackburn, David C.

Publication type:

Article

Assumptions Underlying the Use of Ontogenetic Sequences for Determining Character State Order.

Published in:

Transactions of the American Fisheries Society, 1989, v. 118, n. 2, p. 151, doi. 10.1577/1548-8659(1989)118<0151:AUTUOO>2.3.CO;2

By:

MABEE, PAULA M.

Publication type:

Article

Gene expression patterns underlying proximal-distal skeletal segmentation in late-stage zebrafish, Danio rerio.

Published in:

Developmental Dynamics, 2007, v. 236, n. 11, p. 3111, doi. 10.1002/dvdy.21352

By:

Crotwell, Patricia L.;
Mabee, Paula M.

Publication type:

Article

Data Sources for Trait Databases: Comparing the Phenomic Content of Monographs and Evolutionary Matrices.

Published in:

PLoS ONE, 2016, v. 11, n. 5, p. 1, doi. 10.1371/journal.pone.0155680

By:

Dececchi, T. Alex;
Mabee, Paula M.;
Blackburn, David C.

Publication type:

Article

Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals.

Published in:

PLoS ONE, 2016, v. 11, n. 2, p. 1, doi. 10.1371/journal.pone.0149102

By:

Druzinsky, Robert E.;
Balhoff, James P.;
Crompton, Alfred W.;
Done, James;
German, Rebecca Z.;
Haendel, Melissa A.;
Herrel, Anthony;
Herring, Susan W.;
Lapp, Hilmar;
Mabee, Paula M.;
Muller, Hans-Michael;
Mungall, Christopher J.;
Sternberg, Paul W.;
Van Auken, Kimberly;
Vinyard, Christopher J.;
Williams, Susan H.;
Wall, Christine E.

Publication type:

Article

Integrating Evolution and Development: The Need for Bioinformatics in Evo-Devo.

Published in:

BioScience, 2006, v. 56, n. 4, p. 301, doi. 10.1641/0006-3568(2006)56[301:IEADTN]2.0.CO;2

By:

Mabee, Paula M.

Publication type:

Article

The New "Just So" Stories.

Published in:

2005

By:

Mabee, Paula M.

Publication type:

Book Review

REMOVING FINALISM FROM DEVELOPMENTAL BIOLOGY.

Published in:

2004

By:

Mabee, Paula M.

Publication type:

Book Review

Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes.

Published in:

Molecular Biology & Evolution, 2016, v. 33, n. 1, p. 13, doi. 10.1093/molbev/msv223

By:

Edmunds, Richard C.;
Baofeng Su;
Balhoff, James P.;
Eames, B. Frank;
Dahdul, Wasila M.;
Lapp, Hilmar;
Lundberg, John G.;
Vision, Todd J.;
Dunham, Rex A.;
Mabee, Paula M.;
Westerfield, Monte

Publication type:

Article

Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-21

By:

Haendel, Melissa A.;
Balhoff, James P.;
Bastian, Frederic B.;
Blackburn, David C.;
Blake, Judith A.;
Bradford, Yvonne;
Comte, Aurelie;
Dahdul, Wasila M.;
Dececchi, Thomas A.;
Druzinsky, Robert E.;
Hayamizu, Terry F.;
Ibrahim, Nizar;
Lewis, Suzanna E.;
Mabee, Paula M.;
Niknejad, Anne;
Robinson-Rechavi, Marc;
Sereno, Paul C.;
Mungall, Christopher J.

Publication type:

Article

REASSESSING THE ONTOGENETIC CRITERION: A RESPONSE TO PATTERSON.

Published in:

Cladistics, 1996, v. 12, n. 2, p. 169, doi. 10.1111/j.1096-0031.1996.tb00200.x

By:

Mabee, Paula M.

Publication type:

Article

AN EMPIRICAL REJECTION OF THE ONTOGENETIC POLARITY CRITERION.

Published in:

Cladistics, 1989, v. 5, n. 4, p. 409, doi. 10.1111/j.1096-0031.1989.tb00572.x

By:

Mabee, Paula M.

Publication type:

Article

AN EXPERIMENTAL STUDY OF INTRASPECIFIC VARIATION, DEVELOPMENTAL TIMING, AND HETEROCHRONY IN FISHES.

Published in:

Evolution, 2000, v. 54, n. 6, p. 2091, doi. 10.1554/0014-3820(2000)054[2091:AESOIV]2.0.CO;2

By:

Mabee, Paula M.;
Olmstead, Karen L.

Publication type:

Article

Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems.

Published in:

Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay110

By:

Dahdul, Wasila;
Manda, Prashanti;
Cui, Hong;
Balhoff, James P;
Dececchi, T Alexander;
Ibrahim, Nizar;
Lapp, Hilmar;
Vision, Todd;
Mabee, Paula M

Publication type:

Article

A Unified Anatomy Ontology of the Vertebrate Skeletal System.

Published in:

PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0051070

By:

Dahdul, Wasila M.;
Balhoff, James P.;
Blackburn, David C.;
Diehl, Alexander D.;
Haendel, Melissa A.;
Hall, Brian K.;
Lapp, Hilmar;
Lundberg, John G.;
Mungall, Christopher J.;
Ringwald, Martin;
Segerdell, Erik;
Van Slyke, Ceri E.;
Vickaryous, Matthew K.;
Westerfield, Monte;
Mabee, Paula M.

Publication type:

Article

Evolutionary Characters, Phenotypes and Ontologies : Curating Data from the Systematic Biology Literature.

Published in:

PLoS ONE, 2010, v. 5, n. 5, p. 1, doi. 10.1371/journal.pone.0010708

By:

Dahdul, Wasila M.;
Balhoff, James P.;
Engeman, Jeffrey;
Grande, Terry;
Hilton, Eric J.;
Kothari, Cartik;
Lapp, Hilmar;
Lundberg, John G.;
Midford, Peter E.;
Vision, Todd J.;
Westerfield, Monte;
Mabee, Paula M.

Publication type:

Article

Assessing Bayesian Phylogenetic Information Content of Morphological Data Using Knowledge From Anatomy Ontologies.

Published in:

Systematic Biology, 2022, v. 71, n. 6, p. 1290, doi. 10.1093/sysbio/syac022

By:

Porto, Diego S;
Dahdul, Wasila M;
Lapp, Hilmar;
Balhoff, James P;
Vision, Todd J;
Mabee, Paula M;
Uyeda, Josef

Publication type:

Article

A Logical Model of Homology for Comparative Biology.

Published in:

Systematic Biology, 2020, v. 69, n. 2, p. 345, doi. 10.1093/sysbio/syz067

By:

Mabee, Paula M;
Balhoff, James P;
Dahdul, Wasila M;
Lapp, Hilmar;
Mungall, Christopher J;
Vision, Todd J

Publication type:

Article

Automated Integration of Trees and Traits: A Case Study Using Paired Fin Loss Across Teleost Fishes.

Published in:

Systematic Biology, 2018, v. 67, n. 4, p. 559, doi. 10.1093/sysbio/syx098

By:

JACKSON, LAURA M.;
FERNANDO, PASAN C.;
HANSCOM, JOSH S.;
BALHOFF, JAMES P.;
MABEE, PAULA M.

Publication type:

Article

Toward Synthesizing Our Knowledge of Morphology: Using Ontologies and Machine Reasoning to Extract Presence/Absence Evolutionary Phenotypes across Studies.

Published in:

Systematic Biology, 2015, v. 64, n. 6, p. 936, doi. 10.1093/sysbio/syv031

By:

DECECCHI, T. ALEXANDER;
MABEE, PAULA M.;
BALHOFF, JAMES P.;
LAPP, HILMAR

Publication type:

Article

The Teleost Anatomy Ontology: Anatomical Representation for the Genomics Age.

Published in:

Systematic Biology, 2010, v. 59, n. 4, p. 369, doi. 10.1093/sysbio/syq013

By:

DAHDUL, WASILA M.;
LUNDBERG, JOHN G.;
MIDFORD, PETER E.;
BALHOFF, JAMES P.;
LAPP, HILMAR;
VISION, TODD J.;
HAENDEL, MELISSA A.;
WESTERFIELD, MONTE;
MABEE, PAULA M.

Publication type:

Article

The US National Ecological Observatory Network and the Global Biodiversity Framework: national research infrastructure with a global reach.

Published in:

Journal of Ecology & Environment, 2023, v. 47, n. 1, p. 1, doi. 10.5141/jee.23.076

By:

Thibault, Katherine M.;
Laney, Christine M.;
Yule, Kelsey M.;
Franz, Nico M.;
Mabee, Paula M.

Publication type:

Article

Developmental morphology of the axial skeleton of the zebrafish, Danio rerio (Ostariophysi: Cyprinidae).

Published in:

Developmental Dynamics, 2003, v. 228, n. 3, p. 337

By:

Nathan C. Bird;
Paula M. Mabee

Publication type:

Article

Phylogenetic interpretation of ontogenetic change: sorting out the actual and artefactual in an empirical case study of centrarchid fishes.

Published in:

Zoological Journal of the Linnean Society, 1993, v. 107, n. 3, p. 175, doi. 10.1111/j.1096-3642.1993.tb00289.x

By:

MABEE, PAULA M.

Publication type:

Article

Integration of anatomy ontology data with protein–protein interaction networks improves the candidate gene prediction accuracy for anatomical entities.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03773-2

By:

Fernando, Pasan C.;
Mabee, Paula M.;
Zeng, Erliang

Publication type:

Article